Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27595 Brassica carinata HOM05D005985 ORTHO05D007403 2.0e-126 455.7 217 100.0
A05p21210 Brassica napus HOM05D005985 ORTHO05D007403 2.6e-126 455.3 217 99.5
BolC6t37315H Brassica oleracea HOM05D005985 ORTHO05D007403 7.7e-126 453.8 217 99.1
C05p35800 Brassica napus HOM05D005985 ORTHO05D007403 1.7e-125 452.6 217 99.1
BolC5t32296H Brassica oleracea HOM05D005985 ORTHO05D007403 2.9e-125 451.8 217 99.5
BraA05t21027Z Brassica rapa HOM05D005985 ORTHO05D007403 2.7e-123 445.3 232 93.1
BraA05t20750Z Brassica rapa HOM05D005985 ORTHO05D007403 4.7e-123 444.5 232 93.1
BcaB02g10720 Brassica carinata HOM05D005985 ORTHO05D007403 6.1e-123 444.1 217 97.2
Sp1g35100 Schrenkiella parvula HOM05D005985 ORTHO05D007403 1.3e-120 436.4 217 94.9
Thhalv10012121m.g Eutrema salsugineum HOM05D005985 ORTHO05D007403 1.8e-119 432.6 217 94.0
Carub.0001s3723 Capsella rubella HOM05D005985 ORTHO05D007403 4.2e-116 421.4 217 92.2
AL1G54700 Arabidopsis lyrata HOM05D005985 ORTHO05D007403 3.6e-115 418.3 217 91.7
AT1G48130 Arabidopsis thaliana HOM05D005985 ORTHO05D007403 6.1e-115 417.5 217 90.8
CARHR037770 Cardamine hirsuta HOM05D005985 ORTHO05D007403 8.0e-115 417.2 215 92.1
Aa31LG10G5610 Aethionema arabicum HOM05D005985 ORTHO05D007403 5.4e-103 377.9 222 80.6
THA.LOC104821806 Tarenaya hassleriana HOM05D005985 ORTHO05D007403 2.8e-96 355.5 216 78.2
EL10Ac3g06274 Beta vulgaris HOM05D005985 ORTHO05D007403 3.3e-92 342.0 221 72.9
GSVIVG01017666001 Vitis vinifera HOM05D005985 ORTHO05D007403 1.2e-91 340.1 221 73.3
Eucgr.G02036 Eucalyptus grandis HOM05D005985 ORTHO05D007403 4.7e-91 338.2 223 73.1
Sc24g0001290 Simmondsia chinensis HOM05D005985 ORTHO05D007403 1.4e-90 336.7 221 70.6
Dinv29531 Davidia involucrata HOM05D005985 ORTHO05D007403 1.8e-90 336.3 217 71.4
AUR62029991 Chenopodium quinoa HOM05D005985 ORTHO05D007403 8.9e-90 334.0 221 71.9
MBI18_g28902_MAGBIO Magnolia biondii HOM05D005985 ORTHO05D007403 2.6e-89 332.4 221 69.7
PSO210G5602 Papaver somniferum HOM05D005985 ORTHO05D007403 2.6e-89 332.4 221 70.1
PSO761G0261 Papaver somniferum HOM05D005985 ORTHO05D007403 2.6e-89 332.4 221 70.1
AUR62002570 Chenopodium quinoa HOM05D005985 ORTHO05D007403 3.4e-89 332.0 221 71.9
PSO144G0010 Papaver somniferum HOM05D005985 ORTHO05D007403 3.4e-89 332.0 223 70.0
Manes.15G003600 Manihot esculenta HOM05D005985 ORTHO05D007403 4.4e-89 331.6 223 70.4
HanXRQChr07g0194341 Helianthus annuus HOM05D005985 ORTHO05D007403 5.7e-89 331.3 221 70.1
Phvul.002G189300 Phaseolus vulgaris HOM05D005985 ORTHO05D007403 5.7e-89 331.3 220 70.5
ECA233G5395 Erigeron canadensis HOM05D005985 ORTHO05D007403 1.3e-88 330.1 221 70.6
TWI09G1588 Tripterygium wilfordii HOM05D005985 ORTHO05D007403 1.3e-88 330.1 221 69.2
Solyc03g096040.3 Solanum lycopersicum HOM05D005985 ORTHO05D007403 1.7e-88 329.7 221 70.6
Gorai.011G204600 Gossypium raimondii HOM05D005985 ORTHO05D007403 2.2e-88 329.3 221 69.7
PGR031G1426 Punica granatum HOM05D005985 ORTHO05D007403 2.2e-88 329.3 223 70.0
QL06p013713 Quercus lobata HOM05D005985 ORTHO05D007403 2.2e-88 329.3 221 68.3
Lsat_1_v5_gn_6_69481 Lactuca sativa HOM05D005985 ORTHO05D007403 3.7e-88 328.6 221 71.0
CDE02G0842 Ceratophyllum demersum HOM05D005985 ORTHO05D007403 6.4e-88 327.8 221 67.0
Nn3g21870 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.1e-87 327.0 221 68.8
Potri.008G099900 Populus trichocarpa HOM05D005985 ORTHO05D007403 1.1e-87 327.0 221 71.5
Cfa015714 Carpinus fangiana HOM05D005985 ORTHO05D007403 1.4e-87 326.6 222 68.5
Glyma.08G088000 Glycine max HOM05D005985 ORTHO05D007403 1.4e-87 326.6 220 69.1
Medtr4g094720 Medicago truncatula HOM05D005985 ORTHO05D007403 2.4e-87 325.9 220 69.5
CANSAT78G1051 Cannabis sativa HOM05D005985 ORTHO05D007403 3.2e-87 325.5 221 67.4
Haze_00800 Corylus avellana HOM05D005985 ORTHO05D007403 3.2e-87 325.5 221 67.4
Gohir.A10G176000 Gossypium hirsutum HOM05D005985 ORTHO05D007403 3.2e-87 325.5 221 68.3
Atru.chr4.3125 Acer truncatum HOM05D005985 ORTHO05D007403 4.1e-87 325.1 221 67.4
TPR.G31247 Trifolium pratense HOM05D005985 ORTHO05D007403 4.1e-87 325.1 220 69.1
ATR0796G055 Amborella trichopoda HOM05D005985 ORTHO05D007403 5.4e-87 324.7 221 67.9
Ca_18238_v3 Cicer arietinum L. HOM05D005985 ORTHO05D007403 7.0e-87 324.3 220 68.6
Gohir.D10G182600 Gossypium hirsutum HOM05D005985 ORTHO05D007403 7.0e-87 324.3 221 68.8
Nitab4.5_0000781g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 7.0e-87 324.3 218 69.3
Peaxi162Scf00103g01922 Petunia axillaris HOM05D005985 ORTHO05D007403 7.0e-87 324.3 221 69.2
SGA_v2.0_scaffold64G22045 Striga asiatica HOM05D005985 ORTHO05D007403 7.0e-87 324.3 223 68.6
Lalb_Chr07g0188301 Lupinus albus HOM05D005985 ORTHO05D007403 9.2e-87 323.9 220 69.5
Sabra08G0075600 Salix brachista HOM05D005985 ORTHO05D007403 9.2e-87 323.9 221 71.0
DCAR_023383 Daucus carota HOM05D005985 ORTHO05D007403 1.2e-86 323.6 221 68.3
Sopen03g026120 Solanum pennellii HOM05D005985 ORTHO05D007403 1.2e-86 323.6 221 69.2
Lj6A699T60 Lonicera japonica HOM05D005985 ORTHO05D007403 2.0e-86 322.8 221 69.7
Os07g0638300 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 2.0e-86 322.8 223 68.2
Oeu020283.1 Olea europaea HOM05D005985 ORTHO05D007403 2.7e-86 322.4 216 70.8
Actinidia02521 Actinidia chinensis HOM05D005985 ORTHO05D007403 3.5e-86 322.0 223 67.3
Nitab4.5_0000204g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 4.6e-86 321.6 218 68.3
Lj4g0025954 Lotus japonicus HOM05D005985 ORTHO05D007403 7.8e-86 320.9 222 67.6
Prupe.1G109000 Prunus persica HOM05D005985 ORTHO05D007403 2.3e-85 319.3 222 68.5
MD13G1144500 Malus domestica HOM05D005985 ORTHO05D007403 3.0e-85 318.9 221 66.1
VMungo0251G0059 Vigna mungo HOM05D005985 ORTHO05D007403 3.0e-85 318.9 220 67.3
Duzib128G0500 Durio zibethinus HOM05D005985 ORTHO05D007403 3.9e-85 318.5 221 67.9
Duzib128G2054 Durio zibethinus HOM05D005985 ORTHO05D007403 5.0e-85 318.2 221 67.9
Duzib212G0534 Durio zibethinus HOM05D005985 ORTHO05D007403 6.6e-85 317.8 221 67.4
arahy.Tifrunner.gnm1.ann1.7BH383 Arachis hypogaea HOM05D005985 ORTHO05D007403 1.1e-84 317.0 221 66.5
arahy.Tifrunner.gnm1.ann1.BM2Q5K Arachis hypogaea HOM05D005985 ORTHO05D007403 1.1e-84 317.0 221 66.5
PGSC0003DMG400027720 Solanum tuberosum HOM05D005985 ORTHO05D007403 1.1e-84 317.0 221 68.3
HPP92_020535 Vanilla planifolia HOM05D005985 ORTHO05D007403 1.5e-84 316.6 223 66.4
CsaV3_3G015450 Cucumis sativus L. HOM05D005985 ORTHO05D007403 4.3e-84 315.1 221 64.3
Psat7g085840 Pisum sativum HOM05D005985 ORTHO05D007403 5.6e-84 314.7 220 67.3
Cpa.g.sc146.45 Carica papaya HOM05D005985 ORTHO05D007403 7.3e-84 314.3 221 64.3
Zm00001eb328770 Zea mays HOM05D005985 ORTHO05D007403 2.1e-83 312.8 229 62.9
Aqoxy2G02563 Aquilegia oxysepala HOM05D005985 ORTHO05D007403 2.8e-83 312.4 221 67.4
Manes.03G210400 Manihot esculenta HOM05D005985 ORTHO05D007403 2.8e-83 312.4 223 65.9
RcHm_v2.0_Chr4g0426681 Rosa chinensis HOM05D005985 ORTHO05D007403 8.0e-83 310.8 221 65.6
SalBow8G2871 Salvia bowleyana HOM05D005985 ORTHO05D007403 3.1e-82 308.9 223 65.9
TAR362G0466 Trochodendron aralioides HOM05D005985 ORTHO05D007403 3.1e-82 308.9 247 61.1
CSS0012631 Camellia sinensis var. sinensis HOM05D005985 ORTHO05D007403 4.0e-82 308.5 230 63.9
MELO3C006744.2 Cucumis melo HOM05D005985 ORTHO05D007403 8.9e-82 307.4 235 61.7
ClCG05G006800 Citrullus lanatus HOM05D005985 ORTHO05D007403 1.2e-81 307.0 221 63.3
Migut.O00392 Erythranthe guttata HOM05D005985 ORTHO05D007403 5.8e-81 304.7 225 66.2
Migut.G00012 Erythranthe guttata HOM05D005985 ORTHO05D007403 9.8e-81 303.9 214 69.2
FAN17G1815 Fragaria x ananassa HOM05D005985 ORTHO05D007403 2.9e-80 302.4 221 63.3
SEGI_14508 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 2.9e-80 302.4 219 63.0
Os07g0638400 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 3.7e-80 302.0 223 64.1
unitig_88.g27789 Utricularia gibba HOM05D000412 ORTHO05D007403 8.3e-80 300.8 223 63.7
Ciclev10007138m.g Citrus clementina HOM05D005985 ORTHO05D007403 1.1e-79 300.4 213 66.2
FvH4_4g21120 Fragaria vesca HOM05D005985 ORTHO05D007403 1.2e-78 297.0 214 65.0
Duzib212G0439 Durio zibethinus HOM05D005985 ORTHO05D007403 1.6e-78 296.6 215 66.0
Rhsim02G0000600 Rhododendron simsii HOM05D005985 ORTHO05D007403 6.6e-77 291.2 221 61.5
Nn4g25416 Nelumbo nucifera HOM05D005985 ORTHO05D007403 9.5e-76 287.3 301 49.5
SMO367G0796 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 1.6e-75 286.6 223 57.8
Pp3c22_8470 Physcomitrium patens HOM05D005985 ORTHO05D007403 1.1e-74 283.9 221 62.0
Mapoly0057s0102 Marchantia polymorpha HOM05D005985 ORTHO05D007403 5.8e-73 278.1 221 58.8
CAN.G546.41 Capsicum annuum HOM05D005985 ORTHO05D007403 6.0e-70 268.1 221 61.1
AagrBONN_evm.TU.Sc2ySwM_228.1443 Anthoceros agrestis HOM05D005985 ORTHO05D007403 6.6e-69 264.6 222 55.9
CBR_g8949 Chara braunii HOM05D005985 ORTHO05D007403 1.4e-66 256.9 220 57.7
Pp3c10_21340 Physcomitrium patens HOM05D005985 ORTHO05D007403 2.6e-65 252.7 215 53.0
AagrBONN_evm.TU.Sc2ySwM_117.1081 Anthoceros agrestis HOM05D005985 ORTHO05D007403 9.9e-65 250.8 216 53.2
Pp3c20_21100 Physcomitrium patens HOM05D005985 ORTHO05D007403 6.4e-64 248.1 215 51.2
Mapoly0042s0090 Marchantia polymorpha HOM05D005985 ORTHO05D007403 9.2e-63 244.2 215 52.1
SEGI_03003 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 1.1e-60 237.3 215 49.3
COL.COLO4_34540 Corchorus olitorius HOM05D005985 ORTHO05D007403 1.9e-60 236.5 171 66.7
SMO147G0228 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 1.9e-60 236.5 218 45.4
AagrBONN_evm.TU.Sc2ySwM_228.1273 Anthoceros agrestis HOM05D005985 ORTHO05D007403 3.9e-53 212.2 218 47.2
PRCOL_00004927 Prasinoderma coloniale HOM05D005985 ORTHO05D007403 3.9e-53 212.2 219 47.5
C06p21300 Brassica napus HOM05D005985 ORTHO05D007403 1.6e-46 190.3 87 96.6
Cfa026758 Carpinus fangiana HOM05D005985 ORTHO05D007403 7.4e-44 181.4 202 44.6
Glyma.05G133500 Glycine max HOM05D005985 ORTHO05D007403 1.3e-43 180.6 107 72.9
Haze_27189 Corylus avellana HOM05D005985 ORTHO05D007403 2.6e-41 172.9 213 40.4
Thecc.04G309900 Theobroma cacao HOM05D005985 ORTHO05D007403 2.9e-40 169.5 134 62.7
AagrBONN_evm.TU.Sc2ySwM_344.4472 Anthoceros agrestis HOM05D005985 ORTHO05D007403 1.2e-38 164.1 211 38.9
Nn1g05419 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.3e-35 154.1 89 73.0
GSVIVG01034909001 Vitis vinifera HOM05D005985 ORTHO05D007403 3.7e-35 152.5 118 64.4
Glyma.05G133466 Glycine max HOM05D005985 ORTHO05D007403 1.3e-32 144.1 109 65.1
MD16G1139600 Malus domestica HOM05D005985 ORTHO05D007403 1.1e-31 141.0 184 44.0
Nn1g05808 Nelumbo nucifera HOM05D005985 ORTHO05D007403 7.9e-30 134.8 95 64.2
Gorai.001G249700 Gossypium raimondii HOM05D005985 ORTHO05D007403 4.3e-28 129.0 75 72.0
Gohir.D01G126866 Gossypium hirsutum HOM05D005985 ORTHO05D007403 5.3e-26 122.1 74 70.3
GSVIVG01017665001 Vitis vinifera HOM05D005985 ORTHO05D007403 3.8e-24 115.9 104 57.7
Gorai.002G157500 Gossypium raimondii HOM05D005985 ORTHO05D007403 5.0e-24 115.5 74 67.6
MSTRG.5906 Avicennia marina HOM05D003127 ORTHO05D003709 6.3e-19 98.6 176 30.1
BcaC01g01496 Brassica carinata HOM05D005985 ORTHO05D007403 1.4e-18 97.4 217 35.5
Sopen01g003280 Solanum pennellii HOM05D003127 ORTHO05D003709 1.8e-18 97.1 176 30.1
CBR_g34275 Chara braunii HOM05D003127 ORTHO05D003709 2.2e-16 90.1 177 30.5
Cc03_g00310 Coffea canephora HOM05D005985 ORTHO05D007403 3.2e-15 86.3 62 67.7
PRCOL_00005818 Prasinoderma coloniale HOM05D003127 ORTHO05D003709 8.8e-13 78.2 169 29.0
Glyma.19G198200 Glycine max HOM05D003127 ORTHO05D003709 2.2e-11 73.6 154 30.5
Lalb_Chr13g0293491 Lupinus albus HOM05D005985 ORTHO05D007403 2.2e-08 63.5 39 61.5
Nn6g35647 Nelumbo nucifera HOM05D004597 ORTHO05D005629 6.1e-06 55.5 156 23.7
Solyc07g042440.3 Solanum lycopersicum HOM05D004597 ORTHO05D005629 7.9e-06 55.1 125 24.8
Sopen07g022070 Solanum pennellii HOM05D004597 ORTHO05D005629 7.9e-06 55.1 125 24.8
PGSC0003DMG400013551 Solanum tuberosum HOM05D004597 ORTHO05D005629 7.9e-06 55.1 125 24.8


User provided reference genes

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