Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27523 Brassica carinata HOM05D005947 ORTHO05D007498 5.0e-34 147.1 70 100.0
Aa31LG11G3310 Aethionema arabicum HOM05D005947 ORTHO05D007498 1.7e-21 105.5 50 98.0
Aa31sc89G80 Aethionema arabicum HOM05D000041 ORTHO05D000061 1.7e-21 105.5 50 98.0
AL6G35340 Arabidopsis lyrata HOM05D005947 ORTHO05D007498 1.7e-21 105.5 50 98.0
AT5G24020 Arabidopsis thaliana HOM05D005947 ORTHO05D007498 1.7e-21 105.5 50 98.0
BcaNung01201 Brassica carinata HOM05D005947 ORTHO05D007498 1.7e-21 105.5 50 98.0
BcaNung01829 Brassica carinata HOM05D005947 ORTHO05D007498 1.7e-21 105.5 50 98.0
A06p34800 Brassica napus HOM05D005947 ORTHO05D007498 1.7e-21 105.5 50 98.0
C07p43700 Brassica napus HOM05D005947 ORTHO05D007498 1.7e-21 105.5 50 98.0
BolC7t44900H Brassica oleracea HOM05D005947 ORTHO05D007498 1.7e-21 105.5 50 98.0
BraA06t26407Z Brassica rapa HOM05D005947 ORTHO05D007498 1.7e-21 105.5 50 98.0
CARHR189560 Cardamine hirsuta HOM05D005947 ORTHO05D007498 1.7e-21 105.5 50 98.0
Thhalv10005713m.g Eutrema salsugineum HOM05D005947 ORTHO05D007498 1.7e-21 105.5 50 98.0
Sp2g23290 Schrenkiella parvula HOM05D005947 ORTHO05D007498 1.7e-21 105.5 50 98.0
Carub.0006s2174 Capsella rubella HOM05D005947 ORTHO05D007498 2.2e-21 105.1 50 98.0
THA.LOC104814930 Tarenaya hassleriana HOM05D005947 ORTHO05D007498 2.4e-20 101.7 50 94.0
BcaB04g19841 Brassica carinata HOM05D005947 ORTHO05D007498 4.1e-20 100.9 50 92.0
Nn1g01628 Nelumbo nucifera HOM05D005947 ORTHO05D007498 6.9e-20 100.1 50 92.0
COL.COLO4_10059 Corchorus olitorius HOM05D005947 ORTHO05D007498 1.2e-19 99.4 50 92.0
FAN01G2305 Fragaria x ananassa HOM05D005947 ORTHO05D007498 1.2e-19 99.4 50 90.0
FAN03G2555 Fragaria x ananassa HOM05D005947 ORTHO05D007498 1.2e-19 99.4 50 90.0
FAN03G2880 Fragaria x ananassa HOM05D005947 ORTHO05D007498 1.2e-19 99.4 50 90.0
FAN10G0541 Fragaria x ananassa HOM05D005947 ORTHO05D007498 1.2e-19 99.4 50 90.0
FAN10G2124 Fragaria x ananassa HOM05D005947 ORTHO05D007498 1.2e-19 99.4 50 90.0
FvH4_7g30210 Fragaria vesca HOM05D005947 ORTHO05D007498 1.5e-19 99.0 50 90.0
FAN06G0215 Fragaria x ananassa HOM05D005947 ORTHO05D007498 1.5e-19 99.0 50 90.0
FAN06G1268 Fragaria x ananassa HOM05D005947 ORTHO05D007498 1.5e-19 99.0 50 90.0
Mapoly0042s0122 Marchantia polymorpha HOM05D005947 ORTHO05D007498 1.5e-19 99.0 50 90.0
Lj2g0014936 Lotus japonicus HOM05D005947 ORTHO05D007498 2.0e-19 98.6 50 88.0
Glyma.09G132300 Glycine max HOM05D005947 ORTHO05D007498 2.6e-19 98.2 50 88.0
THA.LOC104798913 Tarenaya hassleriana HOM05D005947 ORTHO05D007498 2.6e-19 98.2 50 90.0
Nitab4.5_0008851g0010 Nicotiana tabacum HOM05D005947 ORTHO05D007498 5.9e-19 97.1 50 90.0
SMO364G0223 Selaginella moellendorffii HOM05D005947 ORTHO05D007498 5.9e-19 97.1 50 88.0
Atru.chr1.362 Acer truncatum HOM05D005947 ORTHO05D007498 7.7e-19 96.7 50 88.0
Eucgr.A02743 Eucalyptus grandis HOM05D005947 ORTHO05D007498 7.7e-19 96.7 50 90.0
Phvul.004G106800 Phaseolus vulgaris HOM05D005947 ORTHO05D007498 7.7e-19 96.7 50 88.0
QL09p012952 Quercus lobata HOM05D005947 ORTHO05D007498 7.7e-19 96.7 50 90.0
VMungo0464G0961 Vigna mungo HOM05D005947 ORTHO05D007498 7.7e-19 96.7 50 88.0
Aqoxy7G00241 Aquilegia oxysepala HOM05D005947 ORTHO05D007498 1.0e-18 96.3 50 90.0
Cpa.g.sc107.105 Carica papaya HOM05D005947 ORTHO05D007498 1.0e-18 96.3 50 90.0
Lalb_Chr03g0034831 Lupinus albus HOM05D005947 ORTHO05D007498 1.0e-18 96.3 50 88.0
Cfa016284 Carpinus fangiana HOM05D005947 ORTHO05D007498 1.7e-18 95.5 50 88.0
CiPaw.05G262900 Carya illinoinensis HOM05D005947 ORTHO05D007498 1.7e-18 95.5 50 88.0
Haze_00040 Corylus avellana HOM05D005947 ORTHO05D007498 1.7e-18 95.5 50 88.0
Duzib084G0036 Durio zibethinus HOM05D005947 ORTHO05D007498 1.7e-18 95.5 50 88.0
Duzib205G0732 Durio zibethinus HOM05D005947 ORTHO05D007498 1.7e-18 95.5 50 88.0
Gohir.A08G098000 Gossypium hirsutum HOM05D005947 ORTHO05D007498 1.7e-18 95.5 50 88.0
Gohir.D08G109600 Gossypium hirsutum HOM05D005947 ORTHO05D007498 1.7e-18 95.5 50 88.0
Gorai.004G117300 Gossypium raimondii HOM05D005947 ORTHO05D007498 1.7e-18 95.5 50 88.0
Thecc.03G183900 Theobroma cacao HOM05D005947 ORTHO05D007498 1.7e-18 95.5 50 88.0
TWI14G0750 Tripterygium wilfordii HOM05D005947 ORTHO05D007498 1.7e-18 95.5 50 86.0
AagrBONN_evm.TU.Sc2ySwM_368.3402 Anthoceros agrestis HOM05D005947 ORTHO05D007498 2.2e-18 95.1 50 84.0
Nitab4.5_0000084g0430 Nicotiana tabacum HOM05D005947 ORTHO05D007498 2.2e-18 95.1 50 88.0
AUR62021126 Chenopodium quinoa HOM05D005947 ORTHO05D007498 2.9e-18 94.7 50 90.0
DCAR_010659 Daucus carota HOM05D005947 ORTHO05D007498 2.9e-18 94.7 50 88.0
Lj1P1004T65 Lonicera japonica HOM05D005947 ORTHO05D007498 2.9e-18 94.7 50 88.0
Rhsim09G0200500 Rhododendron simsii HOM05D005947 ORTHO05D007498 2.9e-18 94.7 50 88.0
Sed0027671 Sechium edule HOM05D005947 ORTHO05D007498 2.9e-18 94.7 50 88.0
Solyc03g007980.1 Solanum lycopersicum HOM05D005947 ORTHO05D007498 2.9e-18 94.7 50 88.0
Sopen03g003920 Solanum pennellii HOM05D005947 ORTHO05D007498 2.9e-18 94.7 50 88.0
PGSC0003DMG400010127 Solanum tuberosum HOM05D005947 ORTHO05D007498 2.9e-18 94.7 50 88.0
Lalb_Chr01g0009481 Lupinus albus HOM05D005947 ORTHO05D007498 3.8e-18 94.4 50 86.0
TWI39G0764 Tripterygium wilfordii HOM05D005947 ORTHO05D007498 3.8e-18 94.4 50 84.0
ClCG01G000930 Citrullus lanatus HOM05D005947 ORTHO05D007498 5.0e-18 94.0 50 88.0
Ciclev10005457m.g Citrus clementina HOM05D005947 ORTHO05D007498 5.0e-18 94.0 50 84.0
MELO3C005838.2 Cucumis melo HOM05D005947 ORTHO05D007498 5.0e-18 94.0 50 88.0
CsaV3_5G001080 Cucumis sativus L. HOM05D005947 ORTHO05D007498 5.0e-18 94.0 50 88.0
MD07G1278700 Malus domestica HOM05D005947 ORTHO05D007498 5.0e-18 94.0 50 86.0
Manes.14G022800 Manihot esculenta HOM05D005947 ORTHO05D007498 5.0e-18 94.0 50 86.0
Peaxi162Scf00444g00012 Petunia axillaris HOM05D005947 ORTHO05D007498 5.0e-18 94.0 50 88.0
Prupe.2G300600 Prunus persica HOM05D005947 ORTHO05D007498 5.0e-18 94.0 50 86.0
RcHm_v2.0_Chr1g0378251 Rosa chinensis HOM05D005947 ORTHO05D007498 5.0e-18 94.0 50 86.0
TAR375G0765 Trochodendron aralioides HOM05D005947 ORTHO05D007498 5.0e-18 94.0 50 86.0
arahy.Tifrunner.gnm1.ann1.4MV0VI Arachis hypogaea HOM05D005947 ORTHO05D007498 6.5e-18 93.6 50 86.0
arahy.Tifrunner.gnm1.ann1.D9DNDH Arachis hypogaea HOM05D005947 ORTHO05D007498 6.5e-18 93.6 50 86.0
CANSAT21G1923 Cannabis sativa HOM05D005947 ORTHO05D007498 6.5e-18 93.6 50 88.0
ECA232G3749 Erigeron canadensis HOM05D005947 ORTHO05D007498 6.5e-18 93.6 50 86.0
Hma1.2p1_0274F.1_g110170 Hydrangea macrophylla HOM05D005947 ORTHO05D007498 6.5e-18 93.6 50 86.0
Lsat_1_v5_gn_9_56500 Lactuca sativa HOM05D005947 ORTHO05D007498 6.5e-18 93.6 50 86.0
SalBow4G2978 Salvia bowleyana HOM05D005947 ORTHO05D007498 6.5e-18 93.6 50 86.0
CSS0033085 Camellia sinensis var. sinensis HOM05D005947 ORTHO05D007498 8.5e-18 93.2 50 86.0
CAN.G236.6 Capsicum annuum HOM05D005947 ORTHO05D007498 8.5e-18 93.2 50 86.0
Dinv35250 Davidia involucrata HOM05D005947 ORTHO05D007498 8.5e-18 93.2 50 86.0
Glyma.16G179200 Glycine max HOM05D005947 ORTHO05D007498 8.5e-18 93.2 50 84.0
PSO478G4027 Papaver somniferum HOM05D005947 ORTHO05D007498 8.5e-18 93.2 50 86.0
PSO782G1988 Papaver somniferum HOM05D005947 ORTHO05D007498 8.5e-18 93.2 50 86.0
vmacro09816 Vaccinium macrocarpon HOM05D005947 ORTHO05D007498 8.5e-18 93.2 50 86.0
CDE02G4387 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 1.1e-17 92.8 48 87.5
CDE11G0334 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 1.1e-17 92.8 48 87.5
AUR62031418 Chenopodium quinoa HOM05D005947 ORTHO05D007498 1.1e-17 92.8 50 88.0
Cc02_g02400 Coffea canephora HOM05D005947 ORTHO05D007498 1.1e-17 92.8 50 86.0
Migut.F00295 Erythranthe guttata HOM05D005947 ORTHO05D007498 1.1e-17 92.8 50 84.0
Nn6g33304 Nelumbo nucifera HOM05D005947 ORTHO05D007498 1.1e-17 92.8 50 84.0
Sed0018068 Sechium edule HOM05D005947 ORTHO05D007498 1.1e-17 92.8 48 89.6
unitig_37.g11971 Utricularia gibba HOM05D005947 ORTHO05D007498 1.1e-17 92.8 50 84.0
Ah.07g206580 Amaranthus hybridus HOM05D005947 ORTHO05D007498 1.4e-17 92.4 50 86.0
MSTRG.27089 Avicennia marina HOM05D005947 ORTHO05D007498 1.4e-17 92.4 50 82.0
Oeu034005.1 Olea europaea HOM05D005947 ORTHO05D007498 1.4e-17 92.4 50 86.0
Sc19g0001250 Simmondsia chinensis HOM05D005947 ORTHO05D007498 1.4e-17 92.4 50 86.0
SGA_v2.0_scaffold60G21105 Striga asiatica HOM05D005947 ORTHO05D007498 1.4e-17 92.4 50 84.0
MSTRG.8712 Avicennia marina HOM05D005947 ORTHO05D007498 1.9e-17 92.0 50 84.0
Pp3c1_24820 Physcomitrium patens HOM05D005947 ORTHO05D007498 1.9e-17 92.0 50 84.0
Pp3c2_15820 Physcomitrium patens HOM05D005947 ORTHO05D007498 1.9e-17 92.0 50 84.0
Actinidia31839 Actinidia chinensis HOM05D005947 ORTHO05D007498 2.5e-17 91.7 50 84.0
Dinv28389 Davidia involucrata HOM05D005947 ORTHO05D007498 2.5e-17 91.7 50 84.0
MBI11_g04748_MAGBIO Magnolia biondii HOM05D005947 ORTHO05D007498 2.5e-17 91.7 50 82.0
PGR042G2417 Punica granatum HOM05D005947 ORTHO05D007498 3.2e-17 91.3 50 82.0
TAR374G0782 Trochodendron aralioides HOM05D005947 ORTHO05D007498 3.2e-17 91.3 50 84.0
SEGI_04763 Sequoiadendron giganteum HOM05D005947 ORTHO05D007498 4.2e-17 90.9 50 84.0
BcaC04g23515 Brassica carinata HOM05D005947 ORTHO05D007498 5.5e-17 90.5 44 93.2
Potri.004G080100 Populus trichocarpa HOM05D005947 ORTHO05D007498 1.6e-16 89.0 50 80.0
Sabra04G0053200 Salix brachista HOM05D005947 ORTHO05D007498 2.1e-16 88.6 50 80.0
Ca_20085_v3 Cicer arietinum L. HOM05D005947 ORTHO05D007498 8.0e-16 86.7 56 75.0
Psat0ss1860g0200 Pisum sativum HOM05D005947 ORTHO05D007498 4.4e-14 80.9 62 66.1
TPR.G33515 Trifolium pratense HOM05D005947 ORTHO05D007498 5.7e-14 80.5 68 60.3
Medtr6g048300 Medicago truncatula HOM05D005947 ORTHO05D007498 2.2e-13 78.6 71 57.7
ATR0661G312 Amborella trichopoda HOM05D005947 ORTHO05D007498 3.1e-12 74.7 50 70.0
Os06g0106000 Oryza sativa ssp. japonica HOM05D005947 ORTHO05D007498 6.5e-10 67.0 50 60.0
Zm00001eb268640 Zea mays HOM05D005947 ORTHO05D007498 6.5e-10 67.0 50 60.0


User provided reference genes

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