Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 1.7e-216 755.7 385 100.0
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 1.1e-215 753.1 385 99.7
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 4.1e-215 751.1 385 99.2
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 1.3e-213 746.1 385 99.0
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 8.1e-211 736.9 385 96.9
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 1.5e-204 716.1 385 94.0
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 8.9e-202 706.8 407 91.4
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 9.6e-188 660.2 384 88.0
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 1.3e-179 633.3 323 100.0
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 8.1e-179 630.6 378 85.2
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 5.1e-173 611.3 378 82.5
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 5.6e-172 607.8 378 81.5
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 7.4e-172 607.4 379 82.6
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 9.0e-170 600.5 378 80.4
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 6.9e-162 574.3 376 77.9
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 3.3e-148 528.9 387 69.0
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 1.2e-129 467.2 350 72.6
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 8.0e-110 401.4 380 56.3
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 4.0e-109 399.1 388 54.9
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 5.2e-109 398.7 376 53.7
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 1.5e-108 397.1 396 55.3
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 5.7e-108 395.2 386 55.7
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 1.3e-107 394.0 386 55.4
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 1.7e-107 393.7 389 54.5
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 1.7e-107 393.7 395 54.2
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 1.7e-107 393.7 391 54.5
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 1.7e-107 393.7 395 54.2
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 8.3e-107 391.3 386 54.7
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.4e-106 389.8 391 53.5
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 4.1e-106 389.0 391 53.5
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 5.4e-106 388.7 391 54.2
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 1.2e-105 387.5 386 54.1
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 2.7e-105 386.3 392 52.8
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 3.5e-105 386.0 393 51.1
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 3.0e-104 382.9 379 50.9
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 3.9e-104 382.5 392 52.0
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 5.0e-104 382.1 392 52.6
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 5.0e-104 382.1 385 52.7
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 8.6e-104 381.3 379 53.0
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 8.6e-104 381.3 419 51.3
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 1.1e-103 380.9 381 51.2
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 1.1e-103 380.9 382 51.0
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 1.5e-103 380.6 382 52.9
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.5e-103 379.8 385 52.5
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 2.5e-103 379.8 382 53.4
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 2.5e-103 379.8 385 52.2
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 2.5e-103 379.8 390 51.5
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 7.3e-103 378.3 385 52.2
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 9.5e-103 377.9 385 53.0
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 2.1e-102 376.7 391 53.7
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 2.1e-102 376.7 391 53.5
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 2.8e-102 376.3 385 51.7
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 6.2e-102 375.2 385 52.2
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 8.0e-102 374.8 388 53.6
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 1.1e-101 374.4 386 53.6
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 1.8e-101 373.6 386 51.3
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 2.3e-101 373.2 392 51.0
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 3.1e-101 372.9 386 52.3
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.5e-100 370.5 399 51.1
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 2.0e-100 370.2 399 51.1
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.0e-100 370.2 386 52.3
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 5.8e-100 368.6 390 51.8
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 1.3e-99 367.5 360 54.7
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 4.9e-99 365.5 384 50.3
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 6.4e-99 365.2 364 52.7
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 8.3e-99 364.8 384 49.7
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 1.1e-98 364.4 382 51.3
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 3.2e-98 362.8 389 50.1
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 3.5e-97 359.4 389 49.9
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 2.3e-96 356.7 402 51.0
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 1.1e-95 354.4 386 48.2
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 1.9e-95 353.6 385 48.6
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 3.3e-95 352.8 389 47.8
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 4.3e-95 352.4 398 47.5
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 4.3e-95 352.4 396 48.2
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 5.6e-95 352.1 381 51.7
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 7.3e-95 351.7 385 49.1
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.8e-93 347.1 366 51.9
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.0e-93 345.9 365 51.5
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 6.8e-93 345.1 417 47.2
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 1.2e-92 344.4 179 97.2
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 1.2e-92 344.4 179 97.2
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 1.5e-92 344.0 379 50.1
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.4e-90 336.7 257 70.8
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 7.1e-90 335.1 386 49.0
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 9.2e-90 334.7 393 47.8
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 2.7e-89 333.2 391 48.1
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 8.6e-88 328.2 380 48.4
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 4.3e-87 325.9 370 48.6
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 7.3e-87 325.1 321 52.6
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 1.1e-85 321.2 382 47.9
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 4.0e-85 319.3 403 44.7
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 1.3e-83 314.3 372 48.9
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.4e-82 310.1 317 52.4
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 3.0e-80 303.1 377 46.4
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 4.3e-79 299.3 333 48.9
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 7.3e-79 298.5 377 44.3
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 9.6e-79 298.1 334 49.1
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 2.8e-78 296.6 380 41.6
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 9.0e-77 291.6 295 52.5
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 4.2e-74 282.7 285 53.7
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 5.1e-72 275.8 191 75.4
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 6.4e-67 258.8 380 41.1
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 1.8e-64 250.8 349 41.5
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 4.3e-63 246.1 367 39.5
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 1.6e-62 244.2 312 44.2
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 3.1e-61 240.0 312 42.9
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 7.6e-60 235.3 356 39.6
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.1e-58 231.5 387 37.7
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 1.2e-57 228.0 396 36.6
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 2.8e-46 190.3 326 36.5
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 7.6e-44 182.2 126 74.6
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 1.2e-41 174.9 205 47.3
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 1.5e-36 157.9 184 47.8
MCO11G507 Micromonas commoda HOM05D005911 ORTHO05D007565 7.2e-34 149.1 369 32.8
Eucgr.G01892 Eucalyptus grandis HOM05D005911 ORTHO05D007565 1.8e-32 144.4 176 48.3
Gorai.008G153200 Gossypium raimondii HOM05D005911 ORTHO05D007565 6.7e-32 142.5 148 49.3
PRCOL_00000481 Prasinoderma coloniale HOM05D005911 ORTHO05D007565 2.0e-31 141.0 343 31.8
Cre17.g701100 Chlamydomonas reinhardtii HOM05D005911 ORTHO05D007565 6.9e-29 132.5 200 43.0
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 2.1e-25 120.9 147 43.5
AagrBONN_evm.TU.Sc2ySwM_228.5516 Anthoceros agrestis HOM05D005911 ORTHO05D007565 2.8e-22 110.5 118 46.6
Nitab4.5_0000776g0050 Nicotiana tabacum HOM05D005911 ORTHO05D007565 3.5e-20 103.6 112 49.1
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 3.6e-17 93.6 157 40.1
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 4.7e-17 93.2 86 57.0
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 4.1e-13 80.1 84 52.4
Ciclev10013569m.g Citrus clementina HOM05D005911 ORTHO05D007565 2.7e-12 77.4 74 54.1
Lj9A367G53 Lonicera japonica HOM05D005911 ORTHO05D007565 1.3e-11 75.1 75 49.3
Ciclev10003801m.g Citrus clementina HOM05D005911 ORTHO05D007565 9.4e-10 68.9 64 51.6
Sc14g0001900 Simmondsia chinensis HOM05D005911 ORTHO05D007565 1.6e-09 68.2 62 54.8
Ciclev10018182m.g Citrus clementina HOM05D005911 ORTHO05D007565 6.1e-09 66.2 64 48.4
Gohir.D04G144225 Gossypium hirsutum HOM05D005911 ORTHO05D007565 2.6e-07 60.8 73 46.6
Gorai.012G129900 Gossypium raimondii HOM05D005911 ORTHO05D007565 2.6e-07 60.8 73 46.6


User provided reference genes

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