Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27336 Brassica carinata HOM05D004224 ORTHO05D006437 9.5e-80 300.1 146 100.0
BcaB04g21275 Brassica carinata HOM05D004224 ORTHO05D006437 5.3e-14 81.6 44 84.1
BolC1t05538H Brassica oleracea HOM05D004224 ORTHO05D006437 1.0e-12 77.4 44 79.5
AT3G07670 Arabidopsis thaliana HOM05D004224 ORTHO05D006437 6.5e-12 74.7 44 77.3
Carub.0003s0725 Capsella rubella HOM05D004224 ORTHO05D006437 8.5e-12 74.3 44 77.3
Sp3g06610 Schrenkiella parvula HOM05D004224 ORTHO05D006437 8.5e-12 74.3 44 77.3
AL3G19030 Arabidopsis lyrata HOM05D004224 ORTHO05D006437 1.1e-11 73.9 44 77.3
Thhalv10020552m.g Eutrema salsugineum HOM05D004224 ORTHO05D006437 1.1e-11 73.9 44 77.3
Aa31LG5G18250 Aethionema arabicum HOM05D004224 ORTHO05D006437 5.5e-11 71.6 43 72.1
CARHR082380 Cardamine hirsuta HOM05D004224 ORTHO05D006437 1.6e-10 70.1 43 74.4
THA.LOC104802631 Tarenaya hassleriana HOM05D004224 ORTHO05D006437 4.7e-10 68.6 44 70.5
ECA236G4771 Erigeron canadensis HOM05D004224 ORTHO05D006437 1.0e-09 67.4 44 72.7
TWI75G0912 Tripterygium wilfordii HOM05D004224 ORTHO05D006437 1.8e-09 66.6 44 63.6
arahy.Tifrunner.gnm1.ann1.CZ6VEU Arachis hypogaea HOM05D004224 ORTHO05D006437 3.0e-09 65.9 44 61.4
arahy.Tifrunner.gnm1.ann1.ZYNV17 Arachis hypogaea HOM05D004224 ORTHO05D006437 3.0e-09 65.9 44 61.4
Ca_16340_v3 Cicer arietinum L. HOM05D004224 ORTHO05D006437 3.0e-09 65.9 44 65.9
MELO3C024188.2 Cucumis melo HOM05D004224 ORTHO05D006437 3.0e-09 65.9 44 68.2
CsaV3_7G002430 Cucumis sativus L. HOM05D004224 ORTHO05D006437 3.0e-09 65.9 44 68.2
RcHm_v2.0_Chr2g0155741 Rosa chinensis HOM05D004224 ORTHO05D006437 3.0e-09 65.9 44 65.9
MBI15_g45882_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 5.2e-09 65.1 44 65.9
Peaxi162Scf00612g00137 Petunia axillaris HOM05D004224 ORTHO05D006437 5.2e-09 65.1 44 65.9
Solyc07g045310.4 Solanum lycopersicum HOM05D004224 ORTHO05D006437 5.2e-09 65.1 44 63.6
Sopen07g023840 Solanum pennellii HOM05D004224 ORTHO05D006437 5.2e-09 65.1 44 63.6
PGSC0003DMG400017407 Solanum tuberosum HOM05D004224 ORTHO05D006437 5.2e-09 65.1 44 63.6
EL10Ac9g22662 Beta vulgaris HOM05D004224 ORTHO05D006437 6.7e-09 64.7 44 65.9
BolC5t32389H Brassica oleracea HOM05D004224 ORTHO05D006437 6.7e-09 64.7 105 45.7
Lsat_1_v5_gn_7_97380 Lactuca sativa HOM05D004224 ORTHO05D006437 6.7e-09 64.7 44 68.2
TAR629G0565 Trochodendron aralioides HOM05D004224 ORTHO05D006437 6.7e-09 64.7 44 68.2
CAN.G437.10 Capsicum annuum HOM05D004224 ORTHO05D006437 8.8e-09 64.3 43 62.8
Glyma.13G010500 Glycine max HOM05D004224 ORTHO05D006437 8.8e-09 64.3 44 63.6
HanXRQChr11g0329421 Helianthus annuus HOM05D004224 ORTHO05D006437 8.8e-09 64.3 44 68.2
Aqoxy7G02030 Aquilegia oxysepala HOM05D004224 ORTHO05D006437 1.2e-08 63.9 44 63.6
FvH4_6g40490 Fragaria vesca HOM05D004224 ORTHO05D006437 1.2e-08 63.9 44 65.9
FAN05G1563 Fragaria x ananassa HOM05D004224 ORTHO05D006437 1.2e-08 63.9 44 65.9
FAN10G1506 Fragaria x ananassa HOM05D004224 ORTHO05D006437 1.2e-08 63.9 44 65.9
FAN14G2615 Fragaria x ananassa HOM05D004224 ORTHO05D006437 1.2e-08 63.9 44 65.9
Lalb_Chr04g0259131 Lupinus albus HOM05D004224 ORTHO05D006437 1.2e-08 63.9 44 65.9
MBI15_g41427_MAGBIO Magnolia biondii HOM05D004224 ORTHO05D006437 1.2e-08 63.9 44 65.9
Rhsim06G0178000 Rhododendron simsii HOM05D004224 ORTHO05D006437 1.2e-08 63.9 44 65.9
CSS0035947 Camellia sinensis var. sinensis HOM05D004224 ORTHO05D006437 1.5e-08 63.5 44 63.6
CDE05G3447 Ceratophyllum demersum HOM05D004224 ORTHO05D006437 1.5e-08 63.5 44 63.6
Dinv21312 Davidia involucrata HOM05D004224 ORTHO05D006437 1.5e-08 63.5 44 63.6
Migut.M00055 Erythranthe guttata HOM05D004224 ORTHO05D006437 1.5e-08 63.5 44 63.6
Lj6g0004652 Lotus japonicus HOM05D004224 ORTHO05D006437 1.5e-08 63.5 44 63.6
PSO541G4615 Papaver somniferum HOM05D004224 ORTHO05D006437 1.5e-08 63.5 44 63.6
PSO675G8516 Papaver somniferum HOM05D004224 ORTHO05D006437 1.5e-08 63.5 44 63.6
Psat5g104720 Pisum sativum HOM05D004224 ORTHO05D006437 1.5e-08 63.5 44 61.4
Actinidia09800 Actinidia chinensis HOM05D004224 ORTHO05D006437 2.0e-08 63.2 44 63.6
Eucgr.A01370 Eucalyptus grandis HOM05D004224 ORTHO05D006437 2.0e-08 63.2 92 40.2
Medtr3g082690 Medicago truncatula HOM05D004224 ORTHO05D006437 2.0e-08 63.2 43 62.8
Os02g0725200 Oryza sativa ssp. japonica HOM05D004224 ORTHO05D006437 2.0e-08 63.2 44 63.6
vmacro12069 Vaccinium macrocarpon HOM05D004224 ORTHO05D006437 2.0e-08 63.2 44 63.6
DCAR_019670 Daucus carota HOM05D004224 ORTHO05D006437 2.6e-08 62.8 44 61.4
Gohir.D07G171000 Gossypium hirsutum HOM05D004224 ORTHO05D006437 2.6e-08 62.8 44 63.6
Gorai.001G190900 Gossypium raimondii HOM05D004224 ORTHO05D006437 2.6e-08 62.8 44 63.6
Hma1.2p1_0629F.1_g192230 Hydrangea macrophylla HOM05D004224 ORTHO05D006437 2.6e-08 62.8 44 63.6
Manes.13G060800 Manihot esculenta HOM05D004224 ORTHO05D006437 2.6e-08 62.8 44 63.6
Sed0013057 Sechium edule HOM05D004224 ORTHO05D006437 2.6e-08 62.8 43 67.4
HPP92_018978 Vanilla planifolia HOM05D004224 ORTHO05D006437 2.6e-08 62.8 44 61.4
CiPaw.03G282900 Carya illinoinensis HOM05D004224 ORTHO05D006437 3.3e-08 62.4 44 61.4
AUR62014995 Chenopodium quinoa HOM05D004224 ORTHO05D006437 3.3e-08 62.4 44 61.4
Phvul.006G005700 Phaseolus vulgaris HOM05D004224 ORTHO05D006437 3.3e-08 62.4 44 59.1
Ah.01g002520 Amaranthus hybridus HOM05D004224 ORTHO05D006437 4.4e-08 62.0 44 63.6
Lj1A799T35 Lonicera japonica HOM05D004224 ORTHO05D006437 4.4e-08 62.0 44 61.4
MD17G1118300 Malus domestica HOM05D004224 ORTHO05D006437 4.4e-08 62.0 44 61.4
Nn1g07539 Nelumbo nucifera HOM05D004224 ORTHO05D006437 4.4e-08 62.0 44 61.4
Potri.014G169300 Populus trichocarpa HOM05D004224 ORTHO05D006437 4.4e-08 62.0 44 61.4
PGR031G1258 Punica granatum HOM05D004224 ORTHO05D006437 4.4e-08 62.0 44 61.4
Thecc.01G198200 Theobroma cacao HOM05D004224 ORTHO05D006437 4.4e-08 62.0 44 63.6
Ciclev10014974m.g Citrus clementina HOM05D004224 ORTHO05D006437 5.7e-08 61.6 44 61.4
Prupe.3G196100 Prunus persica HOM05D004224 ORTHO05D006437 7.5e-08 61.2 44 61.4
Sabra14G0129100 Salix brachista HOM05D004224 ORTHO05D006437 7.5e-08 61.2 44 61.4
Sc21g0000480 Simmondsia chinensis HOM05D004224 ORTHO05D006437 7.5e-08 61.2 44 61.4
ATR0751G026 Amborella trichopoda HOM05D004224 ORTHO05D006437 9.7e-08 60.8 44 59.1
Cfa014211 Carpinus fangiana HOM05D004224 ORTHO05D006437 9.7e-08 60.8 43 62.8
Oeu040454.1 Olea europaea HOM05D004224 ORTHO05D006437 9.7e-08 60.8 44 61.4
GSVIVG01030117001 Vitis vinifera HOM05D004224 ORTHO05D006437 9.7e-08 60.8 44 59.1
Cpa.g.sc136.38 Carica papaya HOM05D004224 ORTHO05D006437 2.2e-07 59.7 44 59.1
Haze_12602 Corylus avellana HOM05D004224 ORTHO05D006437 2.2e-07 59.7 43 60.5
Haze_12613 Corylus avellana HOM05D004224 ORTHO05D006437 2.2e-07 59.7 43 60.5
QL04p067662 Quercus lobata HOM05D004224 ORTHO05D006437 2.2e-07 59.7 44 59.1
CANSAT64G1501 Cannabis sativa HOM05D004224 ORTHO05D006437 2.8e-07 59.3 44 54.5
AagrBONN_evm.TU.Sc2ySwM_228.1763 Anthoceros agrestis HOM05D004224 ORTHO05D006437 6.3e-07 58.2 45 51.1
MSTRG.14913 Avicennia marina HOM05D004224 ORTHO05D006437 6.3e-07 58.2 44 59.1
COL.COLO4_19641 Corchorus olitorius HOM05D004224 ORTHO05D006437 6.3e-07 58.2 44 56.8
Gohir.A08G049300 Gossypium hirsutum HOM05D004224 ORTHO05D006437 8.2e-07 57.8 44 61.4
Gorai.004G061300 Gossypium raimondii HOM05D004224 ORTHO05D006437 1.1e-06 57.4 44 59.1
Nitab4.5_0004852g0010 Nicotiana tabacum HOM05D004224 ORTHO05D006437 1.4e-06 57.0 35 65.7
SGA_v2.0_scaffold73G24493 Striga asiatica HOM05D004224 ORTHO05D006437 1.4e-06 57.0 44 56.8
ClCG02G002970 Citrullus lanatus HOM05D004224 ORTHO05D006437 1.8e-06 56.6 44 65.9
BcaB04g18901 Brassica carinata HOM05D004224 ORTHO05D006437 2.4e-06 56.2 58 50.0
SEGI_13327 Sequoiadendron giganteum HOM05D004224 ORTHO05D006437 4.1e-06 55.5 44 47.7
Nitab4.5_0005354g0080 Nicotiana tabacum HOM05D004224 ORTHO05D006437 9.1e-06 54.3 35 62.9


User provided reference genes

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