Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 5.8e-141 504.2 252 100.0
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 3.2e-139 498.4 252 98.4
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 8.6e-137 490.3 252 98.4
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 8.0e-135 483.8 277 89.5
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 1.3e-132 476.5 277 89.5
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 1.3e-129 466.5 253 94.1
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 4.6e-122 441.4 254 87.8
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 5.6e-120 434.5 254 85.8
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 3.1e-118 428.7 256 85.9
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 4.4e-117 424.9 255 83.9
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 2.1e-114 416.0 256 83.6
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 9.9e-109 397.1 256 81.6
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 5.3e-94 348.2 254 68.5
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 5.6e-88 328.2 301 60.5
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 2.4e-86 322.8 256 64.5
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 2.6e-85 319.3 257 65.0
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 6.5e-84 314.7 251 63.7
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 1.1e-83 313.9 248 64.5
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 1.9e-83 313.2 256 61.7
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 2.5e-83 312.8 260 64.6
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 3.2e-83 312.4 252 63.5
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 5.5e-83 311.6 262 62.6
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 1.2e-82 310.5 252 63.1
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 7.9e-82 307.8 256 63.7
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 2.8e-79 299.3 254 61.4
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 4.8e-79 298.5 254 61.4
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 9.0e-78 294.3 253 61.3
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 1.2e-77 293.9 256 59.8
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 1.5e-77 293.5 254 59.4
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 4.5e-77 292.0 254 59.4
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 4.5e-77 292.0 251 62.2
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 5.9e-77 291.6 252 58.7
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 1.0e-76 290.8 256 59.0
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 1.0e-76 290.8 251 59.0
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.7e-76 290.0 258 60.5
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 2.2e-76 289.7 259 60.6
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 2.5e-75 286.2 256 57.8
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 2.5e-75 286.2 256 57.8
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 2.5e-75 286.2 254 59.1
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 3.2e-75 285.8 260 57.7
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 4.2e-75 285.4 252 59.9
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 9.4e-75 284.3 256 57.8
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 9.4e-75 284.3 252 59.1
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 1.2e-74 283.9 251 59.4
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 1.6e-74 283.5 255 59.2
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 1.6e-74 283.5 250 58.4
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 3.6e-74 282.3 263 57.8
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 4.6e-74 282.0 255 58.4
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 6.1e-74 281.6 251 59.0
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 7.9e-74 281.2 254 57.5
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 1.8e-73 280.0 257 58.8
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 3.0e-73 279.3 256 57.4
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 3.9e-73 278.9 276 55.1
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 3.9e-73 278.9 256 59.8
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 5.1e-73 278.5 252 57.5
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 6.7e-73 278.1 253 55.7
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 8.8e-73 277.7 258 56.2
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 1.5e-72 276.9 256 57.4
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 2.5e-72 276.2 262 58.0
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 2.5e-72 276.2 252 57.1
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 3.3e-72 275.8 256 57.4
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 9.7e-72 274.2 255 57.6
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.3e-71 273.9 256 57.4
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.3e-71 273.9 256 57.0
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 1.7e-71 273.5 254 59.4
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 2.2e-71 273.1 250 55.6
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 2.8e-71 272.7 252 57.1
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 4.8e-71 271.9 263 54.4
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 4.8e-71 271.9 256 57.8
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 1.8e-70 270.0 245 59.6
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 6.9e-70 268.1 263 53.6
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 2.0e-69 266.5 256 55.1
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 4.5e-69 265.4 261 55.2
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 5.9e-69 265.0 264 54.2
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 1.7e-68 263.5 262 55.7
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 2.2e-68 263.1 256 52.7
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 2.9e-68 262.7 261 54.8
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 3.8e-68 262.3 250 54.0
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 2.5e-67 259.6 282 52.5
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 4.2e-67 258.8 253 53.8
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 4.2e-67 258.8 253 55.3
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 5.5e-67 258.5 203 64.0
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 9.4e-67 257.7 266 54.5
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 1.2e-66 257.3 259 52.9
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 2.1e-66 256.5 256 56.2
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 8.8e-65 251.1 251 53.0
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 2.2e-63 246.5 251 51.8
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 1.8e-62 243.4 256 55.9
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 1.1e-59 234.2 260 49.6
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 1.9e-59 233.4 258 51.2
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 3.3e-56 222.6 211 55.5
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 3.3e-56 222.6 255 47.5
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.6e-53 213.8 257 49.4
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.6e-53 213.8 195 60.0
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 1.2e-50 204.1 256 47.3
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 1.0e-49 201.1 157 65.6
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 8.5e-44 181.4 249 43.8
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 1.0e-41 174.5 156 53.8
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 1.2e-37 161.0 241 41.5
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 1.2e-34 151.0 172 48.8
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 1.9e-27 127.1 245 38.4
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 2.1e-26 123.6 142 54.2
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 1.8e-25 120.6 229 38.0
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 3.1e-17 93.2 93 50.5
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 2.2e-15 87.0 103 49.5
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 2.4e-14 83.6 127 42.5
BolC6t39233H Brassica oleracea HOM05D002897 ORTHO05D008718 6.0e-13 79.0 44 86.4
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 1.9e-11 73.9 59 52.5
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 2.1e-10 70.5 220 28.6
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 1.8e-09 67.4 220 28.6


User provided reference genes

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