Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 6.0e-106 387.5 194 100.0
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 2.3e-105 385.6 194 99.5
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 2.3e-105 385.6 194 99.5
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 1.8e-94 349.4 197 91.9
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 1.8e-94 349.4 197 91.9
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.7e-92 342.8 196 89.3
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 6.7e-89 330.9 203 84.7
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 3.4e-85 318.5 203 81.3
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 2.5e-83 312.4 200 81.0
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 4.2e-83 311.6 202 80.7
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 5.1e-81 304.7 200 81.5
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 5.2e-73 278.1 202 74.8
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.8e-65 253.1 202 68.8
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 2.7e-61 239.2 196 65.8
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 2.7e-61 239.2 196 63.3
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.2e-60 236.1 199 62.3
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 1.1e-59 233.8 199 63.3
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.5e-59 232.6 198 66.2
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.6e-58 229.9 201 60.2
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 2.7e-58 229.2 196 61.2
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 4.7e-58 228.4 203 60.6
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 3.0e-57 225.7 197 61.9
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 1.7e-55 219.9 202 62.9
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 1.7e-55 219.9 202 62.9
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 1.7e-55 219.9 202 62.9
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.2e-55 219.5 200 57.0
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 2.8e-55 219.2 199 58.3
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 5.4e-54 214.9 202 60.9
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 5.4e-54 214.9 202 60.9
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.6e-53 213.4 204 57.8
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 2.0e-53 213.0 195 60.0
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.5e-53 212.2 204 57.4
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.9e-53 211.5 202 57.9
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.7e-53 211.1 202 57.9
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 1.0e-52 210.7 204 59.3
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.0e-52 210.7 204 56.9
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 1.3e-52 210.3 204 55.9
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 1.7e-52 209.9 199 56.3
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 2.9e-52 209.1 204 56.9
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 3.8e-52 208.8 207 55.6
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 3.8e-52 208.8 200 57.5
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 5.0e-52 208.4 203 56.7
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 5.0e-52 208.4 197 57.4
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 8.6e-52 207.6 202 56.9
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.3e-51 205.7 202 55.9
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.3e-51 205.7 202 56.9
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 4.3e-51 205.3 203 56.2
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 7.3e-51 204.5 209 56.0
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 9.5e-51 204.1 204 55.9
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 9.5e-51 204.1 197 57.4
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 3.6e-50 202.2 204 54.4
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 6.1e-50 201.4 202 55.0
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 8.0e-50 201.1 206 54.4
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 1.4e-49 200.3 199 56.3
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 1.8e-49 199.9 203 54.7
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 1.8e-49 199.9 200 56.0
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 2.3e-49 199.5 207 54.6
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 2.3e-49 199.5 193 57.0
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 4.0e-49 198.7 200 56.0
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 5.2e-49 198.4 202 55.0
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 5.2e-49 198.4 211 54.5
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 2.6e-48 196.1 199 55.8
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 5.7e-48 194.9 203 55.2
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 5.7e-48 194.9 196 55.6
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 5.7e-48 194.9 198 55.6
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.3e-47 193.7 207 56.0
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 6.4e-47 191.4 208 53.8
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 6.4e-47 191.4 203 54.2
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 8.3e-47 191.0 196 54.6
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 8.3e-47 191.0 199 54.3
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 8.3e-47 191.0 199 54.3
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 8.3e-47 191.0 207 52.2
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 1.4e-46 190.3 203 55.2
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.8e-46 189.9 199 55.3
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.8e-46 189.9 204 51.0
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.1e-46 188.7 207 51.7
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 4.1e-46 188.7 207 51.7
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 5.4e-46 188.3 205 53.7
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 7.0e-46 188.0 198 53.5
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 7.0e-46 188.0 199 54.8
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.2e-45 187.2 198 51.0
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.2e-45 187.2 204 52.0
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 1.2e-45 187.2 204 50.0
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 1.6e-45 186.8 214 49.1
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 3.5e-45 185.7 206 54.9
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 3.5e-45 185.7 201 53.7
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 1.7e-44 183.3 218 51.4
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.7e-44 183.3 197 50.8
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 2.3e-44 183.0 204 54.4
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 2.3e-44 183.0 200 55.0
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 2.3e-44 183.0 200 55.0
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 5.0e-44 181.8 197 56.3
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 6.6e-44 181.4 203 52.2
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 1.1e-43 180.6 199 50.8
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 3.3e-43 179.1 197 54.8
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 4.3e-43 178.7 207 50.7
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 5.6e-43 178.3 200 52.0
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 7.3e-43 177.9 198 51.5
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 7.3e-43 177.9 198 51.5
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 9.5e-43 177.6 198 47.5
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.2e-42 177.2 188 52.1
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 1.2e-42 177.2 210 50.0
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 2.1e-42 176.4 206 50.5
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.8e-42 176.0 198 49.5
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 2.8e-42 176.0 198 49.5
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 3.6e-42 175.6 205 51.7
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 6.2e-42 174.9 199 55.8
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 6.2e-42 174.9 218 48.6
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.4e-41 173.7 203 51.2
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.4e-41 173.7 203 51.2
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.4e-41 173.7 197 48.7
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.3e-41 172.9 197 50.8
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 4.0e-41 172.2 196 51.0
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 4.0e-41 172.2 220 47.7
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 5.2e-41 171.8 203 49.3
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 6.8e-41 171.4 203 49.8
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.2e-40 170.6 204 49.5
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 2.6e-40 169.5 199 47.7
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.6e-40 169.5 200 47.5
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 3.4e-40 169.1 261 41.8
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 5.8e-40 168.3 275 42.9
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.7e-39 166.8 208 49.0
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 2.9e-39 166.0 200 48.0
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 4.9e-39 165.2 204 48.0
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 7.0e-38 161.4 203 50.2
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 2.7e-37 159.5 104 75.0
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 2.7e-37 159.5 209 45.9
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 2.7e-37 159.5 181 50.3
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 3.5e-37 159.1 121 71.9
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.0e-36 157.5 207 46.9
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.0e-36 155.2 115 66.1
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 5.0e-36 155.2 153 59.5
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 1.1e-35 154.1 197 47.7
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.1e-35 154.1 202 45.0
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 4.7e-34 148.7 200 43.5
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 4.7e-34 148.7 201 45.8
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 4.0e-33 145.6 89 75.3
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.5e-32 143.7 152 53.3
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 3.4e-32 142.5 328 33.8
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 7.5e-32 141.4 199 43.2
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 9.8e-32 141.0 204 44.1
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.2e-29 134.0 185 47.0
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 4.6e-29 132.1 126 55.6
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 1.0e-28 131.0 130 53.8
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 3.0e-28 129.4 124 53.2
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 5.1e-28 128.6 179 44.7
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 1.5e-27 127.1 155 52.3
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 3.6e-26 122.5 118 55.1
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 4.7e-26 122.1 109 55.0
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 2.3e-25 119.8 89 60.7
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.1e-25 119.4 153 45.8
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 1.4e-22 110.5 164 42.7
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 4.1e-22 109.0 200 35.0
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 2.7e-21 106.3 157 47.1
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 3.0e-20 102.8 151 43.0
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 6.6e-20 101.7 162 42.6
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.9e-19 100.1 160 43.8
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 1.5e-16 90.5 150 43.3
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 9.9e-16 87.8 73 60.3
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 5.4e-14 82.0 44 86.4
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.7e-12 77.0 64 60.9
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 3.9e-12 75.9 96 47.9
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.1e-11 74.3 44 75.0
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.1e-11 74.3 44 75.0
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 4.3e-11 72.4 52 61.5
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 1.1e-09 67.8 96 45.8
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 1.1e-09 67.8 96 45.8
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 1.1e-09 67.8 96 45.8
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 1.1e-09 67.8 96 45.8
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 1.4e-09 67.4 84 42.9
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.5e-08 63.9 121 36.4
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 3.4e-08 62.8 196 32.7
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 2.4e-06 56.6 72 45.8


User provided reference genes

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