Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 1.6e-158 562.8 289 100.0
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 1.6e-158 562.8 289 100.0
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 2.8e-139 498.8 289 91.0
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 2.8e-139 498.8 289 91.0
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 7.3e-132 474.2 289 86.9
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.1e-127 460.3 288 83.7
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 2.4e-127 459.1 289 82.4
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 6.0e-126 454.5 289 82.0
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 2.3e-125 452.6 289 82.0
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 5.1e-125 451.4 289 82.4
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 5.1e-125 451.4 289 82.4
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 5.1e-125 451.4 289 82.4
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 2.8e-123 445.7 289 80.3
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 4.7e-123 444.9 289 79.9
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 4.7e-123 444.9 292 81.8
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.4e-122 443.4 289 81.0
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 6.9e-122 441.0 290 80.7
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 2.8e-115 419.1 289 78.9
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 5.3e-114 414.8 288 75.7
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 4.8e-99 365.2 291 66.3
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 9.0e-98 360.9 261 69.3
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 9.0e-98 360.9 260 72.3
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 4.5e-97 358.6 288 67.0
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 2.9e-96 355.9 289 65.7
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 3.8e-96 355.5 286 66.8
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.1e-95 354.0 290 63.4
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 2.5e-95 352.8 273 70.7
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 2.5e-95 352.8 257 70.8
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 5.5e-95 351.7 257 69.3
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 5.5e-95 351.7 290 65.5
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 7.1e-95 351.3 289 62.6
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 7.1e-95 351.3 261 69.3
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 9.3e-95 350.9 290 65.5
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.2e-94 350.5 280 67.5
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 2.1e-94 349.7 252 71.8
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 2.7e-94 349.4 288 64.6
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 2.7e-94 349.4 288 64.2
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 3.5e-94 349.0 257 69.3
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 6.0e-94 348.2 289 64.7
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 7.9e-94 347.8 286 65.7
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 1.0e-93 347.4 261 69.7
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.0e-93 347.4 252 69.8
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.7e-93 344.7 253 70.0
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 6.7e-93 344.7 261 69.0
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 8.7e-93 344.4 258 69.4
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 8.7e-93 344.4 235 74.0
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.5e-92 343.6 265 67.2
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.9e-92 343.2 270 66.3
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.9e-92 343.2 262 69.1
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 1.9e-92 343.2 289 64.0
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 2.5e-92 342.8 289 63.7
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 2.5e-92 342.8 288 63.9
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 2.5e-92 342.8 280 66.1
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 3.3e-92 342.4 234 74.4
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.3e-92 342.0 260 68.5
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 4.3e-92 342.0 258 70.2
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 4.3e-92 342.0 238 73.9
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 5.7e-92 341.7 286 64.0
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.7e-92 341.7 266 68.4
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 5.7e-92 341.7 288 64.9
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 7.4e-92 341.3 207 84.1
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 7.4e-92 341.3 270 66.7
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 7.4e-92 341.3 234 74.4
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 7.4e-92 341.3 280 65.7
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.7e-92 340.9 270 65.9
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.6e-91 340.1 293 62.1
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.6e-91 340.1 237 72.6
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.6e-91 340.1 234 73.5
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 2.2e-91 339.7 263 69.2
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 2.8e-91 339.3 253 68.4
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 4.8e-91 338.6 238 70.6
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 6.3e-91 338.2 241 72.2
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 8.2e-91 337.8 289 61.6
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 8.2e-91 337.8 286 63.6
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 8.2e-91 337.8 262 67.6
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.1e-90 337.4 272 66.5
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.4e-90 336.3 276 63.4
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.4e-90 336.3 276 63.0
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 3.1e-90 335.9 261 67.0
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 3.1e-90 335.9 293 61.8
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 9.0e-90 334.3 265 66.0
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 9.0e-90 334.3 234 71.8
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 2.0e-89 333.2 261 65.9
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 2.6e-89 332.8 235 72.3
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.6e-89 332.8 283 62.5
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 7.7e-89 331.3 242 69.4
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 7.7e-89 331.3 253 68.0
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 2.2e-88 329.7 250 67.6
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 2.9e-88 329.3 288 63.5
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 2.9e-88 329.3 233 70.4
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 5.0e-88 328.6 241 69.7
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 2.5e-87 326.2 292 58.6
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.5e-87 326.2 233 70.4
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.6e-86 323.6 241 71.4
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 7.9e-86 321.2 226 73.0
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 1.0e-85 320.9 235 69.8
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.8e-85 320.1 261 65.1
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 2.3e-85 319.7 252 68.7
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 8.8e-85 317.8 250 64.4
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 3.3e-84 315.8 250 64.0
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 7.4e-84 314.7 295 60.0
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.7e-83 313.5 241 67.2
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.2e-83 313.2 297 59.9
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.4e-82 310.5 237 67.5
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 3.1e-82 309.3 248 64.1
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.2e-81 307.4 290 59.3
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.5e-81 307.0 279 56.6
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 2.0e-81 306.6 252 61.5
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.6e-81 306.2 271 59.8
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 2.2e-80 303.1 256 64.1
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 2.5e-79 299.7 234 66.2
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.2e-78 297.4 240 63.3
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 1.6e-78 297.0 204 73.5
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 1.7e-75 287.0 204 72.5
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 1.7e-75 287.0 283 57.2
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.7e-75 287.0 204 71.1
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.8e-75 285.4 220 66.4
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.1e-74 284.3 204 68.6
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.4e-74 283.9 204 71.6
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 4.1e-74 282.3 255 60.4
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 7.7e-73 278.1 241 60.2
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.4e-71 273.9 196 72.4
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 1.4e-71 273.9 235 62.1
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.7e-70 268.9 204 68.1
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 8.0e-70 268.1 205 67.8
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 3.0e-69 266.2 238 60.1
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 8.8e-69 264.6 233 60.5
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.4e-66 257.3 203 65.5
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 4.1e-66 255.8 190 67.9
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.6e-65 253.8 230 59.1
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 5.0e-64 248.8 171 72.5
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 7.5e-60 235.0 227 55.5
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 1.3e-59 234.2 238 53.4
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.8e-59 232.3 190 64.7
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.1e-54 216.9 253 49.4
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.3e-51 207.6 143 72.7
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 3.3e-47 193.0 151 64.9
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 4.7e-46 189.1 129 71.3
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 1.0e-45 188.0 151 64.9
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 1.2e-41 174.5 208 49.0
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.1e-38 163.7 136 63.2
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.0e-37 159.5 136 63.2
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 5.8e-36 155.6 163 54.6
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-35 154.1 102 73.5
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-35 154.1 102 73.5
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.9e-35 152.5 136 60.3
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.0e-32 144.8 121 65.3
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 2.3e-29 133.7 121 57.9
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 5.8e-28 129.0 74 85.1
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.2e-27 127.1 74 83.8
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.9e-27 126.7 74 83.8
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 3.7e-27 126.3 74 83.8
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 4.9e-27 125.9 162 44.4
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.4e-26 124.4 74 81.1
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.6e-22 110.9 208 34.1
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.7e-19 99.8 70 68.6
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 5.4e-18 95.9 64 71.9
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 3.0e-16 90.1 135 45.2
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 1.9e-15 87.4 63 69.8
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 2.5e-15 87.0 66 66.7
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.3e-15 86.3 64 67.2
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 1.5e-12 77.8 44 84.1
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 3.4e-12 76.6 64 62.5
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 7.6e-12 75.5 44 79.5
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 2.9e-11 73.6 46 78.3
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 6.0e-09 65.9 64 53.1
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 1.3e-08 64.7 61 55.7
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.1e-07 61.6 220 26.8
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 4.8e-06 56.2 47 57.4


User provided reference genes

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