Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 6.4e-219 763.8 398 100.0
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 1.2e-185 653.3 407 87.0
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 1.9e-183 646.0 407 86.0
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 2.6e-180 635.6 427 78.5
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 2.7e-177 625.5 434 79.3
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 2.7e-177 625.5 426 78.6
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 1.0e-176 623.6 430 79.5
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.1e-175 620.2 427 77.0
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 2.4e-173 612.5 433 77.4
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 7.6e-172 607.4 320 99.4
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 2.2e-171 605.9 433 76.4
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 4.2e-170 601.7 402 81.8
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 8.4e-163 577.4 425 72.7
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 3.9e-160 568.5 424 70.8
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 7.7e-156 554.3 426 68.1
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 2.5e-151 539.3 429 67.4
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 1.2e-124 450.7 420 58.1
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 1.6e-124 450.3 427 56.2
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 2.7e-124 449.5 428 58.9
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 3.8e-123 445.7 424 55.7
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 5.0e-123 445.3 421 57.0
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 1.1e-122 444.1 421 56.8
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.5e-122 443.0 421 56.8
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 6.1e-121 438.3 419 55.6
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 8.0e-121 438.0 418 55.0
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.0e-120 437.6 434 53.9
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.8e-120 436.8 430 54.9
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 5.2e-120 435.3 427 54.3
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 1.5e-119 433.7 424 56.4
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 2.0e-119 433.3 428 54.9
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 3.4e-119 432.6 419 54.9
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 5.7e-119 431.8 421 56.3
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.3e-118 430.6 432 55.3
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.7e-118 430.3 429 54.5
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 2.2e-118 429.9 424 56.1
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 2.8e-118 429.5 419 53.9
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.8e-118 428.7 420 54.5
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 4.8e-118 428.7 422 55.7
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 4.8e-118 428.7 429 54.3
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 6.3e-118 428.3 419 53.7
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 1.4e-117 427.2 428 52.6
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 2.4e-117 426.4 422 54.5
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.6e-116 423.7 416 54.6
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 2.0e-116 423.3 427 54.6
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.0e-116 423.3 455 51.4
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 2.7e-116 422.9 424 53.5
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 2.7e-116 422.9 434 53.2
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 4.5e-116 422.2 417 52.8
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.3e-115 420.6 419 55.1
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 2.3e-115 419.9 427 53.4
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 2.3e-115 419.9 426 53.8
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 1.5e-114 417.2 436 51.8
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 7.2e-114 414.8 422 51.4
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 9.5e-114 414.5 420 52.9
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 2.1e-113 413.3 426 54.0
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 3.6e-113 412.5 421 54.6
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 6.1e-113 411.8 426 51.4
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.0e-112 411.0 425 52.7
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.8e-112 410.2 428 53.7
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 2.3e-112 409.8 419 54.7
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 2.6e-111 406.4 403 54.3
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 4.4e-111 405.6 408 53.4
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 9.8e-111 404.4 420 55.0
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 9.8e-111 404.4 412 51.2
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 3.7e-110 402.5 420 51.9
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 1.4e-109 400.6 421 52.0
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 2.4e-109 399.8 420 51.7
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 2.4e-109 399.8 425 51.5
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 2.4e-109 399.8 420 52.4
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 3.2e-109 399.4 440 50.9
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 7.0e-109 398.3 425 51.5
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 7.0e-109 398.3 432 50.5
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 2.7e-108 396.4 420 50.2
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 5.9e-108 395.2 416 53.1
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 5.0e-107 392.1 371 57.7
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 8.0e-105 384.8 427 51.1
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.4e-104 384.0 432 48.6
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 1.4e-104 384.0 333 59.5
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 1.4e-104 384.0 452 47.8
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.3e-104 383.3 453 49.2
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 3.1e-104 382.9 371 54.7
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 2.0e-103 380.2 414 49.8
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 5.8e-103 378.6 388 53.9
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 9.8e-103 377.9 454 48.5
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 1.3e-102 377.5 319 60.5
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 1.3e-102 377.5 446 50.0
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.3e-102 377.5 449 47.9
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 1.1e-101 374.4 414 48.8
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 1.1e-101 374.4 381 53.3
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 2.4e-101 373.2 402 51.5
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 7.0e-101 371.7 420 46.4
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 1.6e-100 370.5 359 55.4
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.0e-99 367.9 437 48.7
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.7e-99 367.1 418 47.6
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 2.3e-99 366.7 396 50.5
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 3.0e-99 366.3 463 47.5
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 3.9e-99 365.9 411 47.9
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 5.0e-99 365.5 450 44.4
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 5.0e-99 365.5 426 49.1
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 1.9e-98 363.6 434 50.2
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.9e-98 363.6 436 47.7
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 1.2e-97 360.9 420 48.1
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 1.4e-96 357.5 430 47.0
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 3.1e-96 356.3 418 49.0
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 3.1e-96 356.3 419 48.7
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 5.2e-96 355.5 430 47.2
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 8.9e-96 354.8 389 48.6
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 3.4e-95 352.8 381 52.0
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.7e-94 350.5 420 46.7
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 2.9e-94 349.7 420 47.1
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 2.9e-94 349.7 372 51.9
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 3.7e-94 349.4 398 47.0
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 4.9e-94 349.0 420 47.1
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 5.4e-93 345.5 484 44.8
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.6e-92 342.4 433 46.0
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 4.3e-90 335.9 402 48.3
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.6e-89 334.0 287 57.8
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 6.2e-89 332.0 394 48.0
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 4.4e-87 325.9 398 45.5
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 4.4e-87 325.9 400 46.5
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 1.3e-86 324.3 392 48.5
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 1.1e-85 321.2 376 46.5
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.2e-84 317.8 339 49.9
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 1.2e-84 317.8 318 50.9
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 2.1e-84 317.0 406 45.6
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 1.7e-83 313.9 322 53.1
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 6.6e-83 312.0 404 46.0
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.5e-82 310.1 423 42.6
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 3.1e-80 303.1 397 44.1
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 8.4e-78 295.0 293 51.2
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 9.3e-77 291.6 464 39.4
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 7.3e-74 282.0 408 42.4
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 2.1e-73 280.4 370 44.9
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.4e-72 277.7 236 58.1
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 3.1e-72 276.6 248 57.3
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 1.5e-71 274.2 384 42.7
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 2.2e-70 270.4 372 44.6
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 6.4e-70 268.9 374 44.1
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 2.7e-68 263.5 362 42.5
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 3.5e-68 263.1 362 42.5
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 3.5e-68 263.1 269 55.0
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 6.0e-68 262.3 326 44.5
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 2.5e-66 256.9 322 46.3
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 2.5e-66 256.9 312 44.6
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 1.3e-65 254.6 267 50.9
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 2.8e-65 253.4 396 41.9
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 9.9e-63 245.0 349 41.5
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 3.2e-61 240.0 348 42.5
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 1.6e-57 227.6 214 62.6
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 4.9e-54 216.1 330 40.0
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 2.4e-48 197.2 188 53.7
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.1e-40 171.8 144 60.4
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 1.2e-39 168.3 219 49.8
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 2.0e-34 151.0 155 56.8
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 3.3e-34 150.2 466 26.8
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 9.7e-34 148.7 148 55.4
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 9.7e-34 148.7 148 55.4
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.3e-30 138.3 153 50.3
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 2.2e-30 137.5 200 40.0
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 2.0e-26 124.4 128 51.6
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.7e-25 121.3 131 50.4
C07p16910 Brassica napus HOM05D003649 ORTHO05D041406 3.6e-20 103.6 117 53.8
BolC7t42196H Brassica oleracea HOM05D003649 ORTHO05D041406 3.6e-20 103.6 117 53.8
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 5.2e-19 99.8 165 38.2
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 2.6e-18 97.4 148 45.3
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 3.7e-17 93.6 67 67.2
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 5.9e-15 86.3 94 47.9
BcaC06g35362 Brassica carinata HOM05D003649 ORTHO05D027520 2.5e-13 80.9 114 48.2
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 1.6e-12 78.2 119 37.8
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 3.0e-11 73.9 113 42.5
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 6.8e-11 72.8 59 59.3
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 6.8e-11 72.8 140 35.0
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 8.8e-11 72.4 53 62.3
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 1.2e-10 72.0 109 39.4
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 3.1e-08 63.9 48 62.5
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 4.1e-08 63.5 89 46.1
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 4.1e-08 63.5 39 76.9
Atru.chr3.2263 Acer truncatum HOM05D003649 ORTHO05D004498 7.0e-08 62.8 74 48.6
Atru.chr3.2269 Acer truncatum HOM05D003649 ORTHO05D004498 7.0e-08 62.8 74 48.6
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 3.5e-07 60.5 55 56.4
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 2.9e-06 57.4 51 51.0
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 6.5e-06 56.2 179 27.4


User provided reference genes

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