Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 1.7e-53 212.6 126 100.0
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 1.7e-53 212.6 126 100.0
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 1.7e-53 212.6 126 99.2
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 1.6e-43 179.5 127 76.4
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 4.7e-43 177.9 127 76.4
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 3.4e-41 171.8 127 76.4
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 6.0e-38 161.0 124 68.5
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 1.0e-37 160.2 124 67.7
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 2.0e-33 146.0 125 64.0
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 1.3e-29 133.3 126 61.9
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 2.3e-29 132.5 125 58.4
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 2.4e-23 112.5 124 53.2
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 1.2e-17 93.6 82 65.9
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 1.3e-16 90.1 59 69.5
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 2.2e-16 89.4 57 73.7
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 2.2e-16 89.4 57 73.7
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 2.2e-16 89.4 57 73.7
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 3.8e-16 88.6 60 68.3
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 8.4e-16 87.4 80 57.5
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 3.2e-15 85.5 82 53.7
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 4.2e-15 85.1 79 57.0
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 5.4e-15 84.7 80 57.5
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 9.3e-15 84.0 81 55.6
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 1.2e-14 83.6 81 54.3
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 2.1e-14 82.8 62 64.5
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 2.1e-14 82.8 57 71.9
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 2.7e-14 82.4 59 69.5
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 3.5e-14 82.0 80 56.2
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 7.9e-14 80.9 73 54.8
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.0e-13 80.5 82 53.7
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 1.3e-13 80.1 81 55.6
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 1.7e-13 79.7 91 52.7
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 1.7e-13 79.7 57 64.9
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 2.3e-13 79.3 77 58.4
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 3.0e-13 79.0 77 57.1
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.0e-13 79.0 77 57.1
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.0e-13 79.0 77 57.1
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 5.1e-13 78.2 77 57.1
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 5.1e-13 78.2 69 59.4
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 6.6e-13 77.8 76 53.9
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 6.6e-13 77.8 64 56.2
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 8.7e-13 77.4 61 65.6
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 1.1e-12 77.0 81 53.1
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 1.5e-12 76.6 60 68.3
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 1.5e-12 76.6 69 53.6
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.5e-12 76.6 59 61.0
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 1.5e-12 76.6 60 58.3
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 2.5e-12 75.9 80 52.5
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 3.3e-12 75.5 88 53.4
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 4.3e-12 75.1 73 57.5
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 4.3e-12 75.1 57 61.4
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 4.3e-12 75.1 57 61.4
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 5.6e-12 74.7 76 55.3
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 5.6e-12 74.7 63 55.6
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 5.6e-12 74.7 55 67.3
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 7.4e-12 74.3 73 57.5
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 7.4e-12 74.3 67 59.7
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 7.4e-12 74.3 77 55.8
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 7.4e-12 74.3 59 59.3
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 9.6e-12 73.9 55 67.3
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 9.6e-12 73.9 90 46.7
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 1.3e-11 73.6 51 68.6
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 2.8e-11 72.4 68 55.9
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 4.8e-11 71.6 59 59.3
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 6.2e-11 71.2 60 56.7
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 8.1e-11 70.9 82 50.0
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 8.1e-11 70.9 82 50.0
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 1.1e-10 70.5 52 63.5
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.4e-10 70.1 55 65.5
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.4e-10 70.1 55 65.5
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 1.8e-10 69.7 65 55.4
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 1.8e-10 69.7 76 53.9
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 2.4e-10 69.3 52 63.5
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 4.0e-10 68.6 77 46.8
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 4.0e-10 68.6 91 46.2
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 5.3e-10 68.2 55 63.6
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 6.9e-10 67.8 57 61.4
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 6.9e-10 67.8 52 57.7
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 9.0e-10 67.4 88 45.5
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 9.0e-10 67.4 93 53.8
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 9.0e-10 67.4 56 57.1
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.2e-09 67.0 59 57.6
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 1.5e-09 66.6 83 42.2
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 1.5e-09 66.6 47 68.1
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 2.0e-09 66.2 52 55.8
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 2.0e-09 66.2 54 59.3
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 4.5e-09 65.1 81 50.6
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 5.8e-09 64.7 58 62.1
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 5.8e-09 64.7 64 59.4
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 7.6e-09 64.3 38 71.1
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 9.9e-09 63.9 51 60.8
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 1.3e-08 63.5 78 50.0
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 1.3e-08 63.5 57 54.4
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 1.7e-08 63.2 75 44.0
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 1.7e-08 63.2 52 61.5
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 1.7e-08 63.2 84 44.0
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 2.2e-08 62.8 51 56.9
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 2.2e-08 62.8 38 68.4
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 2.2e-08 62.8 54 55.6
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 2.2e-08 62.8 50 68.0
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 2.9e-08 62.4 38 71.1
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 1.2e-06 57.0 42 64.3
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 1.2e-06 57.0 68 41.2
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 1.6e-06 56.6 50 64.0
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 2.7e-06 55.8 50 52.0
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 6.0e-06 54.7 62 50.0


User provided reference genes

Program Settings