Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 9.3e-53 209.9 105 100.0
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 9.3e-53 209.9 105 100.0
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 9.3e-53 209.9 105 100.0
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 2.6e-10 68.9 45 75.6
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 3.4e-10 68.6 45 77.8
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 3.4e-10 68.6 45 77.8
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 3.4e-10 68.6 45 77.8
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 3.4e-10 68.6 45 77.8
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 5.7e-10 67.8 45 75.6
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 7.5e-10 67.4 45 75.6
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 7.5e-10 67.4 39 82.1
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 7.5e-10 67.4 39 82.1
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 9.8e-10 67.0 45 73.3
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 9.8e-10 67.0 45 75.6
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 1.3e-09 66.6 45 73.3
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.3e-09 66.6 45 73.3
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.3e-09 66.6 45 73.3
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 1.3e-09 66.6 39 82.1
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 1.3e-09 66.6 39 82.1
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.7e-09 66.2 45 73.3
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 1.7e-09 66.2 45 73.3
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 1.7e-09 66.2 45 73.3
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.7e-09 66.2 45 73.3
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 2.2e-09 65.9 45 71.1
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 3.7e-09 65.1 45 71.1
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 3.7e-09 65.1 45 71.1
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 4.9e-09 64.7 45 68.9
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 4.9e-09 64.7 45 73.3
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 6.3e-09 64.3 45 71.1
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 6.3e-09 64.3 38 84.2
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 6.3e-09 64.3 38 84.2
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 6.3e-09 64.3 45 71.1
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 6.3e-09 64.3 45 71.1
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 6.3e-09 64.3 38 84.2
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 6.3e-09 64.3 38 84.2
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 8.3e-09 63.9 38 81.6
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 8.3e-09 63.9 38 81.6
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 8.3e-09 63.9 45 68.9
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 8.3e-09 63.9 45 68.9
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 8.3e-09 63.9 45 68.9
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 8.3e-09 63.9 45 71.1
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-08 63.5 38 81.6
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-08 63.5 38 81.6
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-08 63.5 38 81.6
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-08 63.5 38 81.6
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.4e-08 63.2 45 66.7
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 1.4e-08 63.2 45 68.9
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 1.4e-08 63.2 38 78.9
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.8e-08 62.8 38 78.9
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.8e-08 62.8 45 66.7
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.8e-08 62.8 38 78.9
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.8e-08 62.8 38 78.9
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 1.8e-08 62.8 45 66.7
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 1.8e-08 62.8 45 68.9
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 2.4e-08 62.4 38 78.9
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 2.4e-08 62.4 37 83.8
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.4e-08 62.4 37 81.1
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 2.4e-08 62.4 45 68.9
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 2.4e-08 62.4 45 68.9
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.4e-08 62.4 45 68.9
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 2.4e-08 62.4 37 81.1
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 3.1e-08 62.0 37 78.4
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 3.1e-08 62.0 45 68.9
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.1e-08 62.0 45 68.9
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 3.1e-08 62.0 39 74.4
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 3.1e-08 62.0 45 66.7
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 4.1e-08 61.6 38 78.9
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 4.1e-08 61.6 39 74.4
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 4.1e-08 61.6 37 81.1
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 4.1e-08 61.6 37 81.1
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 4.1e-08 61.6 45 66.7
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 5.4e-08 61.2 37 81.1
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 7.0e-08 60.8 44 68.2
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 7.0e-08 60.8 38 76.3
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 7.0e-08 60.8 38 73.7
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 7.0e-08 60.8 38 76.3
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 9.2e-08 60.5 37 78.4
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 9.2e-08 60.5 45 64.4
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 9.2e-08 60.5 37 81.1
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 9.2e-08 60.5 45 66.7
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 9.2e-08 60.5 45 66.7
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 9.2e-08 60.5 38 76.3
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 1.2e-07 60.1 37 75.7
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 1.2e-07 60.1 37 78.4
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 1.2e-07 60.1 38 73.7
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-07 60.1 45 66.7
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 1.6e-07 59.7 45 62.2
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.6e-07 59.7 37 78.4
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 2.0e-07 59.3 38 76.3
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 2.0e-07 59.3 38 73.7
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.0e-07 59.3 45 64.4
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 2.0e-07 59.3 37 78.4
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 2.0e-07 59.3 37 78.4
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 2.7e-07 58.9 38 73.7
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 2.7e-07 58.9 37 78.4
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.7e-07 58.9 37 75.7
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 3.5e-07 58.5 45 62.2
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 3.5e-07 58.5 64 54.7
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 3.5e-07 58.5 37 75.7
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 4.5e-07 58.2 38 71.1
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 4.5e-07 58.2 37 75.7
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 5.9e-07 57.8 37 78.4
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 5.9e-07 57.8 37 75.7
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 7.7e-07 57.4 37 75.7
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 7.7e-07 57.4 37 75.7
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 7.7e-07 57.4 36 75.0
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 7.7e-07 57.4 38 73.7
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.0e-06 57.0 37 75.7
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 1.0e-06 57.0 37 78.4
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.7e-06 56.2 37 73.0
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.7e-06 56.2 37 73.0
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 1.7e-06 56.2 37 73.0
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.7e-06 56.2 37 70.3
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 2.3e-06 55.8 37 73.0
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 2.3e-06 55.8 37 70.3
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 2.3e-06 55.8 37 70.3
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 2.9e-06 55.5 38 65.8
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 2.9e-06 55.5 37 75.7
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 3.8e-06 55.1 37 70.3
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 3.8e-06 55.1 37 70.3
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 5.0e-06 54.7 37 70.3
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 6.6e-06 54.3 37 75.7
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 6.6e-06 54.3 37 67.6


User provided reference genes

Program Settings