Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 1.1e-119 433.3 222 100.0
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 9.3e-119 430.3 221 99.5
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 9.3e-119 430.3 221 99.5
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 7.4e-116 420.6 222 95.5
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 1.3e-115 419.9 222 96.8
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 1.3e-115 419.9 222 96.8
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 3.0e-109 398.7 222 90.5
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 4.3e-108 394.8 222 89.2
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 1.1e-103 380.2 222 86.5
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 2.5e-100 369.0 223 85.7
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 9.7e-100 367.1 222 85.1
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 1.2e-97 360.1 222 82.9
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 5.7e-92 341.3 236 75.8
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 2.2e-88 329.3 222 74.8
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 2.9e-88 328.9 223 72.6
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 7.2e-87 324.3 222 70.7
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 1.6e-86 323.2 222 70.3
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 5.1e-85 318.2 222 70.3
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 8.8e-85 317.4 225 68.9
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 2.6e-84 315.8 221 69.2
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 3.3e-84 315.5 221 70.1
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 3.3e-84 315.5 227 70.0
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 1.7e-83 313.2 222 67.6
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 3.7e-83 312.0 220 67.7
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 1.1e-82 310.5 219 69.4
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.4e-82 310.1 220 68.6
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 4.1e-82 308.5 219 68.5
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 4.1e-82 308.5 218 68.8
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 5.3e-82 308.1 219 68.0
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 5.3e-82 308.1 220 70.9
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 9.1e-82 307.4 221 67.0
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 9.1e-82 307.4 219 69.4
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 9.1e-82 307.4 222 67.6
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.5e-81 305.4 219 67.6
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 3.5e-81 305.4 220 68.2
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 4.5e-81 305.1 221 66.5
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 5.9e-81 304.7 222 66.2
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 7.7e-81 304.3 223 67.3
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 7.7e-81 304.3 219 67.6
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 1.0e-80 303.9 220 68.2
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 1.7e-80 303.1 223 68.2
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.7e-80 303.1 222 65.3
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 1.7e-80 303.1 221 66.5
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.2e-80 302.8 219 67.1
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 5.0e-80 301.6 221 66.5
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 5.0e-80 301.6 220 66.4
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 6.5e-80 301.2 220 66.8
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 6.5e-80 301.2 218 67.4
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 1.5e-79 300.1 221 66.1
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 1.5e-79 300.1 221 66.1
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 1.5e-79 300.1 221 67.0
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 2.5e-79 299.3 220 65.5
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 2.5e-79 299.3 220 67.3
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 3.2e-79 298.9 220 65.9
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 7.2e-79 297.7 220 66.8
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 9.4e-79 297.4 223 66.4
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.2e-78 297.0 222 64.0
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 1.2e-78 297.0 219 66.7
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 2.1e-78 296.2 221 66.5
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 2.1e-78 296.2 219 65.8
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 3.6e-78 295.4 220 65.5
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 3.6e-78 295.4 224 64.7
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 3.6e-78 295.4 220 66.8
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 6.1e-78 294.7 222 64.9
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 8.0e-78 294.3 224 64.3
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 1.8e-77 293.1 218 66.1
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 1.8e-77 293.1 220 63.6
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 2.3e-77 292.7 220 66.8
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 3.0e-77 292.4 222 63.5
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 4.0e-77 292.0 220 63.2
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 4.0e-77 292.0 218 67.0
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 4.0e-77 292.0 219 66.7
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 4.0e-77 292.0 221 64.7
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 5.2e-77 291.6 226 64.6
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 5.2e-77 291.6 220 66.4
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 6.7e-77 291.2 219 66.7
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 6.7e-77 291.2 234 62.8
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 8.8e-77 290.8 224 62.5
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 1.5e-76 290.0 246 59.8
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 1.5e-76 290.0 232 62.5
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.3e-76 288.9 225 62.7
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 7.5e-76 287.7 221 63.8
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 9.7e-76 287.3 217 63.1
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 1.3e-75 287.0 221 62.0
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 3.7e-75 285.4 220 64.5
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 3.7e-75 285.4 219 62.6
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 1.4e-74 283.5 220 65.5
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 1.8e-74 283.1 211 64.5
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 1.8e-74 283.1 215 64.7
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 1.2e-73 280.4 240 60.0
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.0e-73 279.6 220 62.7
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 2.7e-73 279.3 225 61.3
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 4.5e-73 278.5 223 61.9
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 4.5e-73 278.5 231 59.7
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 1.0e-72 277.3 220 60.5
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.3e-72 276.9 220 61.4
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 2.2e-72 276.2 223 61.9
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 2.9e-72 275.8 220 60.9
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 4.2e-71 271.9 220 59.5
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 2.1e-70 269.6 255 56.5
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 3.6e-70 268.9 263 54.4
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 4.7e-70 268.5 222 59.5
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 2.3e-69 266.2 222 59.5
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 4.4e-68 261.9 220 57.7
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.3e-67 260.4 184 65.2
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 2.2e-67 259.6 185 64.9
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 5.4e-66 255.0 134 90.3
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 1.6e-65 253.4 220 60.5
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 2.0e-65 253.1 249 54.6
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 2.7e-65 252.7 215 58.6
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 7.7e-65 251.1 154 70.1
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 7.7e-65 251.1 218 58.7
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 1.5e-63 246.9 206 57.3
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 5.7e-60 235.0 221 55.2
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 6.3e-59 231.5 220 54.5
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 1.2e-57 227.3 191 59.7
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 4.5e-57 225.3 169 59.8
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 6.6e-56 221.5 235 51.9
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 5.7e-52 208.4 251 48.2
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 1.3e-51 207.2 215 50.7
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 1.4e-50 203.8 120 75.0
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 5.6e-47 191.8 235 43.4
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 2.1e-46 189.9 111 74.8
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 6.2e-46 188.3 221 47.1
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.3e-39 166.0 156 50.6
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 3.1e-37 159.5 251 39.4
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.0e-36 156.8 107 63.6
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 1.1e-31 141.0 178 43.8
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 1.3e-24 117.5 243 35.8
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 1.4e-10 70.9 89 47.2
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 3.2e-10 69.7 41 78.0
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.0e-08 64.7 43 65.1
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 1.8e-08 63.9 42 66.7
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 1.5e-07 60.8 210 27.1
Lj2A178T48 Lonicera japonica HOM05D001916 ORTHO05D003272 9.6e-07 58.2 166 26.5
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 2.1e-06 57.0 34 76.5
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 2.8e-06 56.6 188 23.4
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 8.1e-06 55.1 37 78.4


User provided reference genes

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