Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 5.4e-145 517.7 269 100.0
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 4.4e-115 418.3 266 87.2
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 1.9e-113 412.9 249 91.2
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 1.4e-97 360.1 234 85.0
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 7.9e-96 354.4 234 84.2
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 2.8e-85 319.3 267 69.7
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 1.2e-83 313.9 261 71.3
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 3.9e-79 298.9 269 66.9
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 2.8e-77 292.7 267 65.2
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 3.7e-77 292.4 268 65.3
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 4.2e-73 278.9 269 63.6
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 4.0e-47 192.6 262 45.8
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 5.0e-42 175.6 281 42.7
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 7.2e-41 171.8 237 44.3
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.6e-40 169.5 273 39.6
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 4.7e-40 169.1 273 41.0
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 6.1e-40 168.7 260 39.2
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 7.0e-36 155.2 279 40.1
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 3.5e-35 152.9 270 38.1
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 5.9e-35 152.1 233 37.8
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 6.5e-34 148.7 238 39.1
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 6.5e-34 148.7 233 40.3
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 3.2e-33 146.4 275 37.5
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 2.8e-32 143.3 293 36.2
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 6.1e-32 142.1 209 39.2
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 1.8e-31 140.6 273 35.5
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 1.8e-31 140.6 256 38.3
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 1.8e-31 140.6 256 38.3
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 2.3e-31 140.2 244 35.2
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 3.0e-31 139.8 233 37.3
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 3.0e-31 139.8 265 36.6
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 4.0e-31 139.4 274 36.9
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 4.0e-31 139.4 246 36.6
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 5.2e-31 139.0 224 39.3
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 6.8e-31 138.7 268 33.6
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 1.7e-29 134.0 190 40.0
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 4.9e-29 132.5 250 36.4
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 8.3e-29 131.7 231 37.7
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 1.4e-28 131.0 266 34.2
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 1.4e-28 131.0 220 35.5
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 1.8e-28 130.6 249 36.9
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 1.8e-28 130.6 228 35.5
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 5.4e-28 129.0 220 35.0
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 9.2e-28 128.3 258 35.3
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 1.6e-27 127.5 284 32.4
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.0e-27 127.1 236 36.9
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 2.7e-27 126.7 224 38.8
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 2.7e-27 126.7 229 34.9
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 2.7e-27 126.7 229 34.9
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 4.5e-27 125.9 207 38.2
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 5.9e-27 125.6 231 36.8
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 1.0e-26 124.8 266 33.5
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 1.3e-26 124.4 164 43.3
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 2.3e-26 123.6 232 35.8
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 5.0e-26 122.5 230 37.8
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 5.0e-26 122.5 254 32.3
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 6.6e-26 122.1 257 34.2
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 8.6e-26 121.7 269 34.2
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 1.1e-25 121.3 264 33.7
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 1.1e-25 121.3 169 38.5
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 4.3e-25 119.4 281 34.2
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 4.3e-25 119.4 265 32.8
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 7.3e-25 118.6 176 39.2
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 1.6e-24 117.5 267 33.7
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 2.8e-24 116.7 229 36.2
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 3.6e-24 116.3 271 32.5
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 1.4e-23 114.4 235 36.2
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 5.2e-23 112.5 202 37.6
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 5.2e-23 112.5 184 41.3
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 5.2e-23 112.5 163 40.5
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 3.4e-22 109.8 278 30.2
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 2.2e-21 107.1 176 35.8
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 2.9e-21 106.7 264 33.7
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 3.7e-21 106.3 272 31.2
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 1.4e-20 104.4 256 30.5
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.2e-20 103.2 188 39.4
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 9.2e-20 101.7 203 35.5
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 1.6e-19 100.9 270 31.5
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 2.3e-18 97.1 201 32.3
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 2.5e-17 93.6 218 30.3
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 8.0e-16 88.6 196 33.2
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 1.8e-15 87.4 198 33.8
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 1.8e-15 87.4 198 33.8
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 2.3e-15 87.0 191 35.1
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 5.2e-15 85.9 148 37.8
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 6.8e-15 85.5 132 36.4
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 2.2e-13 80.5 252 27.4
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 8.3e-13 78.6 170 31.8
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 8.3e-13 78.6 267 27.3
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 4.1e-12 76.3 202 28.2
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 2.7e-11 73.6 139 32.4
AUR62031072 Chenopodium quinoa HOM05D007447 ORTHO05D009372 6.6e-10 68.9 102 36.3
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 3.3e-09 66.6 131 28.2
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 6.2e-08 62.4 64 48.4
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 1.8e-07 60.8 192 26.6
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 5.2e-07 59.3 159 30.2
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 7.5e-06 55.5 55 47.3


User provided reference genes

Program Settings