Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-81 306.2 149 100.0
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 3.7e-47 191.8 149 69.8
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 3.7e-47 191.8 149 69.8
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 3.0e-44 182.2 155 66.5
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 2.5e-43 179.1 155 66.5
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 2.5e-43 179.1 155 66.5
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 5.6e-43 177.9 149 65.1
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 2.8e-42 175.6 148 64.9
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 2.0e-40 169.5 166 59.6
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 5.8e-40 167.9 166 58.4
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-38 163.7 155 64.5
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-38 163.7 155 64.5
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.1e-38 163.7 155 64.5
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 1.3e-36 156.8 149 60.4
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 5.1e-36 154.8 166 56.0
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 5.1e-36 154.8 166 56.0
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-35 153.3 166 55.4
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.9e-35 152.9 167 55.7
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 1.6e-34 149.8 157 56.7
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.6e-34 149.8 167 53.9
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 2.1e-34 149.4 166 54.2
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 3.6e-34 148.7 166 54.2
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 1.1e-33 147.1 180 51.7
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.4e-33 146.7 167 53.3
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.8e-33 146.4 177 50.3
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 3.1e-33 145.6 167 53.3
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 3.1e-33 145.6 143 58.0
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 8.9e-33 144.1 168 51.8
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 4.4e-32 141.7 164 51.8
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.7e-31 139.8 173 50.9
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 2.2e-31 139.4 179 50.3
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 3.8e-31 138.7 185 48.6
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 3.8e-31 138.7 171 50.9
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 6.4e-31 137.9 175 50.9
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.4e-30 136.0 166 51.2
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 2.4e-30 136.0 140 55.0
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 5.4e-30 134.8 183 48.1
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.6e-29 133.3 162 50.0
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 2.1e-29 132.9 135 55.6
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 3.5e-29 132.1 190 46.3
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 3.5e-29 132.1 190 46.3
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 3.5e-29 132.1 196 46.4
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 7.8e-29 131.0 135 54.8
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 2.3e-28 129.4 180 46.7
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 3.9e-28 128.6 150 50.7
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 6.6e-28 127.9 154 50.0
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 8.7e-28 127.5 167 46.7
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.1e-27 127.1 171 45.0
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 1.9e-27 126.3 132 53.8
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 2.5e-27 125.9 167 47.3
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.5e-27 125.9 139 51.8
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 4.3e-27 125.2 173 45.7
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 5.6e-27 124.8 135 51.1
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 5.6e-27 124.8 134 51.5
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 7.3e-27 124.4 141 53.2
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.2e-26 123.6 151 49.0
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.6e-26 123.2 156 51.9
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 2.1e-26 122.9 161 47.2
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.1e-26 122.9 161 47.2
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 2.1e-26 122.9 136 52.2
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 6.2e-26 121.3 132 50.8
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 1.8e-25 119.8 133 51.1
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 4.0e-25 118.6 134 48.5
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 5.2e-25 118.2 177 43.5
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 6.9e-25 117.9 203 42.4
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 6.9e-25 117.9 135 50.4
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 9.0e-25 117.5 153 45.8
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 1.5e-24 116.7 134 49.3
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 2.0e-24 116.3 138 50.0
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.0e-24 116.3 138 47.8
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 2.6e-24 115.9 131 50.4
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 3.4e-24 115.5 149 47.0
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.3e-23 113.6 128 50.8
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.3e-23 113.6 134 50.7
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.3e-23 113.6 168 42.3
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.2e-23 112.8 155 43.9
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 2.2e-23 112.8 155 43.9
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 2.9e-23 112.5 141 46.8
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 4.9e-23 111.7 188 38.3
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 6.4e-23 111.3 130 48.5
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.1e-22 110.5 142 47.2
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 1.1e-22 110.5 154 45.5
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 1.1e-22 110.5 154 45.5
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 1.4e-22 110.2 149 43.6
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 3.2e-22 109.0 134 49.3
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 4.2e-22 108.6 142 44.4
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 4.2e-22 108.6 161 41.6
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 1.2e-21 107.1 146 43.2
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 1.2e-21 107.1 172 40.7
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 1.2e-21 107.1 157 44.6
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.6e-21 106.7 157 43.9
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 1.6e-21 106.7 160 41.9
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 1.6e-21 106.7 153 41.8
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 2.7e-21 105.9 156 41.0
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 2.7e-21 105.9 170 43.5
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.5e-21 105.5 168 37.5
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 3.5e-21 105.5 166 44.6
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 4.6e-21 105.1 167 37.7
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 6.0e-21 104.8 152 44.1
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 7.8e-21 104.4 161 42.9
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 7.8e-21 104.4 141 45.4
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.7e-20 103.2 145 42.8
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.7e-20 103.2 162 39.5
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 2.3e-20 102.8 143 43.4
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.0e-20 102.4 165 38.2
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 3.9e-20 102.1 178 38.8
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 5.1e-20 101.7 136 48.5
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 6.6e-20 101.3 136 43.4
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 6.6e-20 101.3 151 46.4
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 1.5e-19 100.1 151 39.7
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.5e-19 100.1 133 45.9
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 1.9e-19 99.8 154 42.2
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 2.5e-19 99.4 150 40.7
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 2.5e-19 99.4 129 48.1
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 2.5e-19 99.4 149 44.3
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 3.3e-19 99.0 147 41.5
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 4.3e-19 98.6 136 46.3
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 5.6e-19 98.2 143 41.3
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 5.6e-19 98.2 144 44.4
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 5.6e-19 98.2 141 42.6
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 5.6e-19 98.2 146 40.4
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 7.3e-19 97.8 147 40.1
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 9.6e-19 97.4 150 40.7
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.3e-18 97.1 120 44.2
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 1.3e-18 97.1 143 40.6
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 1.3e-18 97.1 154 40.3
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.6e-18 96.7 133 46.6
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 1.6e-18 96.7 144 41.7
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.6e-18 96.7 147 41.5
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 2.8e-18 95.9 153 39.9
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.6e-18 95.5 126 42.9
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 4.8e-18 95.1 163 36.2
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 4.8e-18 95.1 126 45.2
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 8.1e-18 94.4 141 40.4
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.4e-17 93.6 182 36.3
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 1.8e-17 93.2 152 39.5
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 4.0e-17 92.0 131 42.7
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 4.0e-17 92.0 156 37.8
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 6.9e-17 91.3 157 38.2
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 6.9e-17 91.3 141 41.8
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 9.0e-17 90.9 160 38.1
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 9.0e-17 90.9 180 34.4
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.5e-16 90.1 141 39.7
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.5e-16 90.1 163 35.6
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.0e-16 89.7 153 37.9
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 2.0e-16 89.7 134 40.3
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.6e-16 89.4 142 39.4
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.7e-15 86.7 199 33.2
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.2e-15 86.3 159 36.5
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 3.8e-15 85.5 140 39.3
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 4.9e-15 85.1 127 42.5
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 6.4e-15 84.7 175 34.9
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 6.4e-15 84.7 126 42.1
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 1.1e-14 84.0 163 35.6
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 1.4e-14 83.6 163 35.6
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.9e-14 83.2 158 36.7
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 3.2e-14 82.4 155 34.2
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 3.2e-14 82.4 182 32.4
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 4.2e-14 82.0 176 31.8
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.6e-13 80.1 169 34.3
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.8e-12 76.6 131 34.4
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 2.3e-12 76.3 38 84.2
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.3e-12 76.3 165 35.2
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.9e-12 75.5 134 33.6
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.9e-12 75.5 144 34.7
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.5e-11 73.6 147 35.4
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 4.3e-11 72.0 145 42.8
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.3e-10 70.5 153 34.0
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 3.7e-10 68.9 103 40.8
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.6e-08 62.8 173 28.3
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.9e-06 56.6 164 29.3
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 9.3e-06 54.3 73 47.9


User provided reference genes

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