Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26804 Brassica carinata HOM05D000300 ORTHO05D013482 3.4e-74 281.6 142 100.0
BcaC05g26805 Brassica carinata HOM05D000300 ORTHO05D013482 7.9e-63 243.8 130 96.9
BraA09t39330Z Brassica rapa HOM05D000300 ORTHO05D013482 2.2e-44 182.6 157 66.2
BcaC05g26612 Brassica carinata HOM05D000300 ORTHO05D013482 4.8e-44 181.4 157 64.3
C05p26630 Brassica napus HOM05D000300 ORTHO05D013482 4.8e-44 181.4 157 64.3
BolC5t31382H Brassica oleracea HOM05D000300 ORTHO05D013482 4.8e-44 181.4 157 65.6
A09p38150 Brassica napus HOM05D000300 ORTHO05D013482 1.1e-43 180.3 157 65.6
A09p38180 Brassica napus HOM05D000300 ORTHO05D013482 6.9e-43 177.6 161 64.6
BraA09t39331Z Brassica rapa HOM05D000300 ORTHO05D013482 4.5e-42 174.9 159 64.2
BolC5t31381H Brassica oleracea HOM05D000300 ORTHO05D013482 1.4e-38 163.3 145 63.4
Carub.0001s2645 Capsella rubella HOM05D000300 ORTHO05D013482 5.2e-38 161.4 151 59.6
AT1G28000 Arabidopsis thaliana HOM05D000300 ORTHO05D013482 3.7e-36 155.2 151 57.0
CARHR027450 Cardamine hirsuta HOM05D000300 ORTHO05D013482 2.6e-34 149.1 149 55.0
Thhalv10009763m.g Eutrema salsugineum HOM05D000300 ORTHO05D013482 8.0e-31 137.5 134 59.7
AL1G41540 Arabidopsis lyrata HOM05D000300 ORTHO05D017381 1.6e-18 96.7 149 42.3
AT1G28020 Arabidopsis thaliana HOM05D000300 ORTHO05D017381 6.5e-17 91.3 148 41.9
BcaC05g26617 Brassica carinata HOM05D000300 ORTHO05D017381 2.5e-16 89.4 132 42.4
C05p26670 Brassica napus HOM05D000300 ORTHO05D017381 2.5e-16 89.4 132 42.4
BraA09t39325Z Brassica rapa HOM05D000300 ORTHO05D017381 4.2e-16 88.6 141 39.7
BraA09t39326Z Brassica rapa HOM05D000300 ORTHO05D017381 5.5e-16 88.2 141 39.7
BolC5t31390H Brassica oleracea HOM05D000300 ORTHO05D017381 9.5e-16 87.4 106 50.9
Thhalv10027393m.g Eutrema salsugineum HOM05D000300 ORTHO05D000383 9.5e-16 87.4 150 40.7
Thhalv10009907m.g Eutrema salsugineum HOM05D000300 ORTHO05D017381 1.2e-15 87.0 127 45.7
BcaB07g30898 Brassica carinata HOM05D000300 ORTHO05D012934 6.1e-15 84.7 135 37.8
A01p09220 Brassica napus HOM05D000300 ORTHO05D000383 6.1e-15 84.7 149 37.6
BraA01t00865Z Brassica rapa HOM05D000300 ORTHO05D000383 6.1e-15 84.7 149 37.6
C01p10800 Brassica napus HOM05D000300 ORTHO05D000383 2.3e-14 82.8 149 36.9
BolC1t01041H Brassica oleracea HOM05D000300 ORTHO05D000383 2.3e-14 82.8 149 36.9
AL3G40150 Arabidopsis lyrata HOM05D000300 ORTHO05D013472 5.2e-14 81.6 149 36.2
CARHR027480 Cardamine hirsuta HOM05D000300 ORTHO05D000383 5.2e-14 81.6 147 38.8
BcaB04g18636 Brassica carinata HOM05D000300 ORTHO05D013472 1.5e-13 80.1 135 39.3
BcaNung01373 Brassica carinata HOM05D000300 ORTHO05D015941 1.5e-13 80.1 132 37.9
AL7G37910 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 2.6e-13 79.3 134 37.3
BcaC05g26797 Brassica carinata HOM05D000300 ORTHO05D017381 5.7e-13 78.2 129 39.5
Carub.0003s1068 Capsella rubella HOM05D000300 ORTHO05D013472 7.5e-13 77.8 151 37.7
AL1G54220 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 8.3e-12 74.3 61 60.7
CARHR100860 Cardamine hirsuta HOM05D000300 ORTHO05D013472 1.1e-11 73.9 132 37.1
BolC3t16746H Brassica oleracea HOM05D000300 ORTHO05D013472 1.4e-11 73.6 150 35.3
C03p44850 Brassica napus HOM05D000300 ORTHO05D013472 1.8e-11 73.2 150 35.3
BcaC01g04126 Brassica carinata HOM05D000300 ORTHO05D013472 2.4e-11 72.8 149 37.6
C03p44860 Brassica napus HOM05D000300 ORTHO05D013472 2.4e-11 72.8 149 37.6
Carub.0001s3674 Capsella rubella HOM05D000300 ORTHO05D012934 2.4e-11 72.8 61 59.0
Thhalv10027559m.g Eutrema salsugineum HOM05D000300 ORTHO05D013472 2.4e-11 72.8 118 39.0
A03p37020 Brassica napus HOM05D000300 ORTHO05D013472 3.1e-11 72.4 150 34.0
BraA03t12864Z Brassica rapa HOM05D000300 ORTHO05D013472 3.1e-11 72.4 150 34.0
CARHR027470 Cardamine hirsuta HOM05D000300 ORTHO05D012934 4.1e-11 72.0 111 43.2
AT3G11350 Arabidopsis thaliana HOM05D000300 ORTHO05D013472 4.5e-10 68.6 115 37.4
AL1G54230 Arabidopsis lyrata HOM05D000300 ORTHO05D012934 5.9e-10 68.2 60 58.3
CARHR004430 Cardamine hirsuta HOM05D000300 ORTHO05D015941 5.9e-10 68.2 80 45.0
Aa31LG8G17610 Aethionema arabicum HOM05D000300 ORTHO05D000383 1.3e-09 67.0 148 37.2
AL3G53800 Arabidopsis lyrata HOM05D000300 ORTHO05D000383 3.8e-09 65.5 143 37.8
AT3G11380 Arabidopsis thaliana HOM05D000300 ORTHO05D013472 1.9e-08 63.2 62 54.8
Sp3g33960 Schrenkiella parvula HOM05D000300 ORTHO05D000383 1.9e-08 63.2 162 34.6
BcaC01g04127 Brassica carinata HOM05D000300 ORTHO05D013472 2.5e-08 62.8 118 38.1
BcaC05g26803 Brassica carinata HOM05D000300 ORTHO05D013482 2.5e-08 62.8 85 49.4
AT2G20710 Arabidopsis thaliana HOM05D000300 ORTHO05D000383 4.3e-08 62.0 143 37.1
Carub.0001s0426 Capsella rubella HOM05D000300 ORTHO05D015941 4.3e-08 62.0 100 40.0
AL3G22860 Arabidopsis lyrata HOM05D000300 ORTHO05D013472 5.6e-08 61.6 68 51.5
AL1G14750 Arabidopsis lyrata HOM05D000300 ORTHO05D015941 1.6e-07 60.1 98 37.8
AL1G41500 Arabidopsis lyrata HOM05D000300 ORTHO05D015941 1.6e-07 60.1 98 38.8
BcaC01g04130 Brassica carinata HOM05D000300 ORTHO05D021402 3.6e-07 58.9 102 40.2
C03p44820 Brassica napus HOM05D000300 ORTHO05D021402 3.6e-07 58.9 102 40.2
AT1G43010 Arabidopsis thaliana HOM05D000300 ORTHO05D013482 8.0e-07 57.8 101 38.6
SGA_v2.0_scaffold340G49333 Striga asiatica HOM05D000300 ORTHO05D000383 8.0e-07 57.8 118 31.4
CARHR035800 Cardamine hirsuta HOM05D000300 ORTHO05D015941 1.0e-06 57.4 76 47.4
BcaB04g18632 Brassica carinata HOM05D000300 ORTHO05D016697 1.4e-06 57.0 78 43.6
A09p12950 Brassica napus HOM05D000300 ORTHO05D000383 1.4e-06 57.0 144 34.7
Lsat_1_v5_gn_3_38180 Lactuca sativa HOM05D000300 ORTHO05D000383 1.4e-06 57.0 147 32.0
GSVIVG01020533001 Vitis vinifera HOM05D000300 ORTHO05D000383 1.8e-06 56.6 132 31.8
SalBow4G0452 Salvia bowleyana HOM05D000300 ORTHO05D000383 3.0e-06 55.8 107 35.5
AT1G05005 Arabidopsis thaliana HOM05D000300 ORTHO05D015941 4.0e-06 55.5 100 39.0
BcaB04g18634 Brassica carinata HOM05D000300 ORTHO05D015941 4.0e-06 55.5 61 52.5
BcaB07g31583 Brassica carinata HOM05D000300 ORTHO05D000383 4.0e-06 55.5 144 34.7
Carub.0003s3522 Capsella rubella HOM05D000300 ORTHO05D000383 4.0e-06 55.5 148 33.1
PSO302G0202 Papaver somniferum HOM05D000300 ORTHO05D000383 4.0e-06 55.5 127 27.6
BcaB04g18628 Brassica carinata HOM05D000300 ORTHO05D021402 5.2e-06 55.1 68 45.6
CARHR111350 Cardamine hirsuta HOM05D000300 ORTHO05D000383 5.2e-06 55.1 143 33.6
BraA09t36941Z Brassica rapa HOM05D000300 ORTHO05D000383 6.8e-06 54.7 143 33.6
Peaxi162Scf00853g00422 Petunia axillaris HOM05D000300 ORTHO05D000383 6.8e-06 54.7 118 27.1
Solyc01g089870.3 Solanum lycopersicum HOM05D000300 ORTHO05D000383 8.9e-06 54.3 118 27.1
Sopen01g035710 Solanum pennellii HOM05D000300 ORTHO05D000383 8.9e-06 54.3 118 27.1
PGSC0003DMG400031170 Solanum tuberosum HOM05D000300 ORTHO05D000383 8.9e-06 54.3 118 27.1


User provided reference genes

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