Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 7.4e-133 477.2 248 100.0
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 1.7e-121 439.5 230 99.6
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.3e-100 370.2 228 91.2
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.6e-98 363.2 229 90.4
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 5.5e-96 354.8 227 88.5
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 3.6e-95 352.1 227 88.1
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 3.6e-95 352.1 227 88.1
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 2.7e-90 335.9 247 80.6
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 1.6e-87 326.6 233 78.5
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 4.7e-87 325.1 235 78.3
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 6.1e-87 324.7 231 78.8
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 1.4e-86 323.6 235 77.9
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 2.3e-86 322.8 232 77.6
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 6.4e-84 314.7 227 78.0
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 3.2e-83 312.4 238 76.9
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 7.0e-83 311.2 238 76.5
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 7.3e-80 301.2 237 74.7
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 3.2e-75 285.8 240 71.2
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 1.2e-74 283.9 228 70.6
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 1.6e-55 220.3 234 61.5
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.1e-54 217.6 242 58.3
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.7e-49 200.3 237 56.5
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 6.2e-47 191.8 237 52.7
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 8.4e-44 181.4 253 48.2
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 1.5e-40 170.6 247 47.8
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 2.1e-39 166.8 226 50.0
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 1.8e-38 163.7 254 45.7
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 4.0e-38 162.5 253 45.5
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 5.3e-38 162.2 244 44.7
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 5.3e-38 162.2 251 46.2
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.2e-37 161.0 253 44.3
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 1.2e-37 161.0 242 47.9
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 2.0e-37 160.2 259 44.0
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 3.4e-37 159.5 255 45.5
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 7.6e-37 158.3 254 44.9
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 1.7e-36 157.1 237 46.0
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.7e-36 157.1 239 46.4
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 3.8e-36 156.0 247 45.7
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.1e-35 154.5 248 45.6
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 2.5e-35 153.3 251 43.4
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 3.2e-35 152.9 246 44.7
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 5.5e-35 152.1 239 45.6
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 7.1e-35 151.8 247 44.9
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.6e-34 150.6 253 44.7
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 2.1e-34 150.2 250 44.0
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 7.9e-34 148.3 257 41.6
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 1.3e-33 147.5 256 44.5
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 1.8e-33 147.1 224 43.3
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 3.0e-33 146.4 261 42.1
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 8.7e-33 144.8 248 43.1
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.5e-32 144.1 246 44.3
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.9e-32 143.7 248 43.5
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.9e-32 143.7 248 43.5
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 1.3e-31 141.0 236 44.9
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 6.2e-31 138.7 233 45.5
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 6.2e-31 138.7 251 44.2
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.4e-30 137.5 233 42.9
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.4e-30 137.5 249 42.2
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 4.0e-30 136.0 230 44.3
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 5.3e-30 135.6 234 44.0
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 1.5e-29 134.0 237 43.9
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 4.5e-29 132.5 249 43.0
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.0e-28 131.3 255 42.0
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.9e-28 129.0 236 41.1
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 1.4e-27 127.5 216 41.7
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 3.2e-27 126.3 227 42.3
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 4.6e-26 122.5 246 41.5
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 8.7e-25 118.2 230 38.7
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 1.9e-24 117.1 225 44.4
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 1.9e-24 117.1 229 38.9
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 1.9e-24 117.1 229 38.9
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 3.3e-24 116.3 212 40.1
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 5.7e-24 115.5 226 39.4
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 9.7e-24 114.8 274 38.3
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 2.8e-23 113.2 233 38.6
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 8.2e-23 111.7 231 38.5
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 8.2e-23 111.7 230 37.4
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 1.4e-22 110.9 121 57.0
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 3.1e-22 109.8 251 38.6
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 5.3e-22 109.0 248 35.9
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 6.9e-22 108.6 227 36.1
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 1.2e-21 107.8 232 38.4
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 3.4e-21 106.3 226 34.5
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 1.0e-20 104.8 227 37.0
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 5.0e-20 102.4 251 35.9
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 3.2e-19 99.8 278 37.8
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.2e-19 99.8 230 36.5
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 4.2e-19 99.4 219 38.4
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 6.1e-18 95.5 206 39.3
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 3.9e-17 92.8 226 38.1
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 8.8e-17 91.7 245 35.9
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 3.3e-16 89.7 125 48.8
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 4.8e-15 85.9 220 33.6
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 3.1e-14 83.2 124 46.0
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 6.9e-14 82.0 225 34.7
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 2.0e-13 80.5 222 34.7
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.3e-12 77.8 217 36.9
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 1.7e-12 77.4 221 34.4
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 8.5e-12 75.1 250 32.0
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 8.5e-12 75.1 248 31.5
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 1.1e-11 74.7 126 42.9
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 7.2e-11 72.0 222 31.1
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 9.4e-11 71.6 236 31.4
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 1.6e-10 70.9 227 34.8
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 1.4e-09 67.8 240 34.6
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 1.4e-09 67.8 85 49.4
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.8e-09 67.4 102 44.1
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 3.3e-08 63.2 244 30.7
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 2.2e-07 60.5 198 31.3
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.4e-06 57.8 196 31.1


User provided reference genes

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