Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26717 Brassica carinata HOM05D007441 ORTHO05D009501 4.8e-115 417.9 223 100.0
BolC5t31303H Brassica oleracea HOM05D007441 ORTHO05D009501 1.9e-87 326.2 189 91.5
C05p25830 Brassica napus HOM05D007441 ORTHO05D009501 8.0e-86 320.9 189 91.0
A09p38770 Brassica napus HOM05D007441 ORTHO05D009501 9.4e-79 297.4 191 85.3
BraA09t39385Z Brassica rapa HOM05D007441 ORTHO05D009501 9.4e-79 297.4 191 85.3
BcaC05g26720 Brassica carinata HOM05D007441 ORTHO05D009501 2.1e-78 296.2 189 85.2
Sp1g23350 Schrenkiella parvula HOM05D007441 ORTHO05D009501 1.0e-72 277.3 184 80.4
Thhalv10008862m.g Eutrema salsugineum HOM05D007441 ORTHO05D009501 1.1e-71 273.9 187 79.1
Carub.0001s2566 Capsella rubella HOM05D007441 ORTHO05D009501 1.6e-70 270.0 187 80.2
AL1G40490 Arabidopsis lyrata HOM05D007441 ORTHO05D009501 2.1e-70 269.6 188 78.2
CARHR026680 Cardamine hirsuta HOM05D007441 ORTHO05D009501 6.1e-70 268.1 192 76.6
AT1G24450 Arabidopsis thaliana HOM05D007441 ORTHO05D009501 8.9e-69 264.2 192 74.5
THA.LOC104809273 Tarenaya hassleriana HOM05D007441 ORTHO05D009501 1.3e-59 233.8 184 68.5
BcaC05g26525 Brassica carinata HOM05D007441 ORTHO05D009501 9.2e-58 227.6 124 94.4
Aa31LG7G9580 Aethionema arabicum HOM05D007441 ORTHO05D009501 1.3e-56 223.8 185 67.6
Duzib205G0170 Durio zibethinus HOM05D007441 ORTHO05D009501 3.7e-51 205.7 181 60.2
FAN18G4363 Fragaria x ananassa HOM05D007441 ORTHO05D009501 1.7e-48 196.8 193 54.9
Ciclev10022460m.g Citrus clementina HOM05D007441 ORTHO05D009501 6.6e-48 194.9 175 61.1
FvH4_5g05090 Fragaria vesca HOM05D007441 ORTHO05D009501 1.9e-47 193.4 181 56.4
Glyma.17G091300 Glycine max HOM05D007441 ORTHO05D009501 5.6e-47 191.8 155 61.9
Duzib084G0400 Durio zibethinus HOM05D007441 ORTHO05D009501 7.3e-47 191.4 179 56.4
FAN13G3077 Fragaria x ananassa HOM05D007441 ORTHO05D009501 9.5e-47 191.0 200 52.5
FAN04G2715 Fragaria x ananassa HOM05D007441 ORTHO05D009501 2.8e-46 189.5 181 54.7
Prupe.5G176500 Prunus persica HOM05D007441 ORTHO05D009501 3.6e-46 189.1 178 57.9
GSVIVG01007790001 Vitis vinifera HOM05D007441 ORTHO05D009501 3.6e-46 189.1 174 59.8
CSS0037538 Camellia sinensis var. sinensis HOM05D007441 ORTHO05D009501 1.8e-45 186.8 184 51.6
RcHm_v2.0_Chr7g0193911 Rosa chinensis HOM05D007441 ORTHO05D009501 4.0e-45 185.7 175 55.4
Thecc.03G008500 Theobroma cacao HOM05D007441 ORTHO05D009501 4.0e-45 185.7 183 56.8
Actinidia19093 Actinidia chinensis HOM05D007441 ORTHO05D009501 5.2e-45 185.3 180 55.0
VMungo1215G1307 Vigna mungo HOM05D007441 ORTHO05D009501 6.8e-45 184.9 150 60.0
Lj4g0018861 Lotus japonicus HOM05D007441 ORTHO05D009501 2.0e-44 183.3 143 64.3
Phvul.003G198700 Phaseolus vulgaris HOM05D007441 ORTHO05D009501 2.0e-44 183.3 150 59.3
arahy.Tifrunner.gnm1.ann1.DR4P4T Arachis hypogaea HOM05D007441 ORTHO05D009501 3.4e-44 182.6 149 59.7
Lj9A451T94 Lonicera japonica HOM05D007441 ORTHO05D009501 3.4e-44 182.6 143 62.2
Sc04g0001930 Simmondsia chinensis HOM05D007441 ORTHO05D009501 3.4e-44 182.6 147 63.3
arahy.Tifrunner.gnm1.ann1.01HJP6 Arachis hypogaea HOM05D007441 ORTHO05D009501 1.3e-43 180.6 179 52.0
QL10p013655 Quercus lobata HOM05D007441 ORTHO05D009501 1.7e-43 180.3 141 63.8
PGR044G0794 Punica granatum HOM05D007441 ORTHO05D009501 2.9e-43 179.5 189 55.6
MD14G1183800 Malus domestica HOM05D007441 ORTHO05D009501 6.4e-43 178.3 150 59.3
Lalb_Chr07g0182651 Lupinus albus HOM05D007441 ORTHO05D009501 8.4e-43 177.9 181 54.7
Hma1.2p1_0176F.1_g077710 Hydrangea macrophylla HOM05D007441 ORTHO05D009501 1.1e-42 177.6 185 51.4
Hund02733 Selenicereus undatus HOM05D007441 ORTHO05D009501 1.4e-42 177.2 143 63.6
BcaC06g35265 Brassica carinata HOM05D007441 ORTHO05D009501 1.9e-42 176.8 110 85.5
AUR62008240 Chenopodium quinoa HOM05D007441 ORTHO05D009501 1.9e-42 176.8 179 54.7
Lsat_1_v5_gn_1_26521 Lactuca sativa HOM05D007441 ORTHO05D009501 1.9e-42 176.8 176 54.0
Potri.012G078400 Populus trichocarpa HOM05D007441 ORTHO05D009501 2.4e-42 176.4 150 60.7
AUR62030992 Chenopodium quinoa HOM05D007441 ORTHO05D009501 4.1e-42 175.6 176 55.1
Medtr4g106640 Medicago truncatula HOM05D007441 ORTHO05D009501 4.1e-42 175.6 171 55.6
C07p18070 Brassica napus HOM05D007441 ORTHO05D009501 9.2e-42 174.5 110 84.5
Oeu016356.1 Olea europaea HOM05D007441 ORTHO05D009501 9.2e-42 174.5 149 58.4
Atru.chr9.2436 Acer truncatum HOM05D007441 ORTHO05D009501 1.6e-41 173.7 179 53.6
Ca_21905_v3 Cicer arietinum L. HOM05D007441 ORTHO05D009501 2.1e-41 173.3 149 59.1
Ca_21923_v3 Cicer arietinum L. HOM05D007441 ORTHO05D009501 2.1e-41 173.3 149 59.1
Sabra12G0056200 Salix brachista HOM05D007441 ORTHO05D009501 2.1e-41 173.3 150 60.0
ECA247G2439 Erigeron canadensis HOM05D007441 ORTHO05D009501 4.6e-41 172.2 144 59.0
Psat4g057000 Pisum sativum HOM05D007441 ORTHO05D009501 6.0e-41 171.8 178 53.4
CiPaw.11G029400 Carya illinoinensis HOM05D007441 ORTHO05D009501 7.8e-41 171.4 179 52.0
Potri.015G073900 Populus trichocarpa HOM05D007441 ORTHO05D009501 1.1e-39 167.5 173 57.2
Dinv20676 Davidia involucrata HOM05D007441 ORTHO05D009501 1.9e-39 166.8 148 57.4
HanXRQChr02g0037211 Helianthus annuus HOM05D007441 ORTHO05D009501 5.6e-39 165.2 204 46.6
Manes.06G102900 Manihot esculenta HOM05D007441 ORTHO05D009501 5.6e-39 165.2 146 58.2
TPR.G37479 Trifolium pratense HOM05D007441 ORTHO05D009501 5.6e-39 165.2 141 59.6
TWI15G0162 Tripterygium wilfordii HOM05D007441 ORTHO05D009501 7.3e-39 164.9 148 60.8
EL10Ac5g10787 Beta vulgaris HOM05D007441 ORTHO05D009501 9.6e-39 164.5 128 66.4
Cpa.g.sc124.33 Carica papaya HOM05D007441 ORTHO05D009501 9.6e-39 164.5 149 56.4
SGA_v2.0_scaffold90G27976 Striga asiatica HOM05D007441 ORTHO05D009501 2.8e-38 162.9 174 52.3
PGSC0003DMG400024487 Solanum tuberosum HOM05D007441 ORTHO05D009501 3.6e-38 162.5 181 50.3
Nitab4.5_0006831g0010 Nicotiana tabacum HOM05D007441 ORTHO05D009501 4.7e-38 162.2 167 53.9
Aqoxy3G03040 Aquilegia oxysepala HOM05D007441 ORTHO05D009501 1.8e-37 160.2 140 60.0
Rhsim12G0163200 Rhododendron simsii HOM05D007441 ORTHO05D009501 1.8e-37 160.2 136 57.4
CANSAT80G2614 Cannabis sativa HOM05D007441 ORTHO05D009501 2.4e-37 159.8 175 52.0
Solyc03g114120.3 Solanum lycopersicum HOM05D007441 ORTHO05D009501 2.4e-37 159.8 181 49.7
Sopen03g033180 Solanum pennellii HOM05D007441 ORTHO05D009501 2.4e-37 159.8 181 49.7
TAR622G1175 Trochodendron aralioides HOM05D007441 ORTHO05D009501 4.0e-37 159.1 147 56.5
PSO832G4588 Papaver somniferum HOM05D007441 ORTHO05D009501 6.9e-37 158.3 180 49.4
SalBow5G3166 Salvia bowleyana HOM05D007441 ORTHO05D009501 1.5e-36 157.1 176 51.1
CAN.G4872.1 Capsicum annuum HOM05D007441 ORTHO05D009501 1.7e-35 153.7 203 47.8
Nitab4.5_0010542g0040 Nicotiana tabacum HOM05D007441 ORTHO05D001268 3.8e-35 152.5 150 56.7
MSTRG.23109 Avicennia marina HOM05D007441 ORTHO05D009501 4.9e-35 152.1 171 48.5
BolC7t42316H Brassica oleracea HOM05D007441 ORTHO05D009501 1.9e-34 150.2 105 76.2
AUR62029952 Chenopodium quinoa HOM05D007441 ORTHO05D009501 1.2e-33 147.5 128 59.4
DCAR_031307 Daucus carota HOM05D007441 ORTHO05D009501 2.1e-33 146.7 122 60.7
Haze_07488 Corylus avellana HOM05D007441 ORTHO05D009501 2.7e-33 146.4 145 55.9
Nn4g22840 Nelumbo nucifera HOM05D007441 ORTHO05D009501 2.7e-33 146.4 171 47.4
CAN.G781.35 Capsicum annuum HOM05D007441 ORTHO05D009501 6.0e-33 145.2 136 56.6
ATR1149G031 Amborella trichopoda HOM05D007441 ORTHO05D009501 2.0e-28 130.2 171 45.6
Peaxi162Scf00017g00269 Petunia axillaris HOM05D007441 ORTHO05D009501 2.2e-27 126.7 114 56.1
MBI15_g31106_MAGBIO Magnolia biondii HOM05D007441 ORTHO05D009501 1.2e-25 120.9 119 52.1
Actinidia34944 Actinidia chinensis HOM05D007441 ORTHO05D009501 8.7e-24 114.8 88 59.1
Zm00001eb210540 Zea mays HOM05D007441 ORTHO05D009501 3.3e-23 112.8 145 42.1
AUR62039786 Chenopodium quinoa HOM05D007441 ORTHO05D009501 4.0e-21 105.9 119 50.4
Dinv09163 Davidia involucrata HOM05D007441 ORTHO05D009501 1.2e-20 104.4 121 48.8
COL.COLO4_16923 Corchorus olitorius HOM05D007441 ORTHO05D009501 3.8e-19 99.4 99 50.5
AUR62040474 Chenopodium quinoa HOM05D007441 ORTHO05D009501 5.5e-18 95.5 124 46.8
Medtr4g079220 Medicago truncatula HOM05D007441 ORTHO05D009501 7.9e-17 91.7 89 58.4
CAN.G781.34 Capsicum annuum HOM05D007441 ORTHO05D009501 5.6e-15 85.5 75 57.3
SMO118G0028 Selaginella moellendorffii HOM05D007441 ORTHO05D009501 1.4e-13 80.9 123 35.8
Os03g0854400 Oryza sativa ssp. japonica HOM05D007441 ORTHO05D009501 9.0e-13 78.2 168 33.9
Migut.I00040 Erythranthe guttata HOM05D007441 ORTHO05D009501 2.0e-12 77.0 68 50.0
SEGI_24388 Sequoiadendron giganteum HOM05D007441 ORTHO05D009501 1.4e-10 70.9 112 39.3
HPP92_004711 Vanilla planifolia HOM05D007441 ORTHO05D009501 2.7e-09 66.6 102 40.2


User provided reference genes

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