Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 1.0e-57 226.9 144 100.0
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-57 226.9 144 100.0
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-55 219.9 144 94.4
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 1.2e-55 219.9 144 94.4
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 3.6e-47 191.8 144 87.5
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 4.9e-44 181.4 148 64.9
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 9.2e-35 150.6 167 61.1
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 5.1e-33 144.8 166 59.6
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.5e-32 143.3 169 66.3
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 5.6e-32 141.4 157 51.0
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 7.3e-32 141.0 170 65.9
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 4.7e-31 138.3 176 60.2
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.8e-30 136.3 166 63.9
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 4.0e-30 135.2 168 57.7
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.2e-29 133.7 170 62.9
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 1.5e-29 133.3 166 58.4
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 2.0e-29 132.9 166 57.8
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.0e-29 132.9 167 63.5
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 2.6e-29 132.5 175 58.9
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.4e-29 132.1 162 54.9
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 7.6e-29 131.0 155 65.2
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 9.9e-29 130.6 172 61.0
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 9.9e-29 130.6 154 48.7
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 9.9e-29 130.6 154 48.7
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.7e-28 129.8 164 51.8
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 2.2e-28 129.4 182 58.8
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 3.8e-28 128.6 184 59.2
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 6.4e-28 127.9 134 71.6
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 1.4e-27 126.7 189 56.6
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 1.4e-27 126.7 189 56.6
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 7.1e-27 124.4 166 60.2
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 7.1e-27 124.4 178 56.7
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 1.6e-26 123.2 161 57.8
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 4.6e-26 121.7 165 58.2
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-25 120.6 147 64.6
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.0e-25 120.6 165 58.8
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.3e-25 119.4 161 61.5
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 3.0e-25 119.0 177 57.1
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 3.0e-25 119.0 161 61.5
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 8.7e-25 117.5 180 58.3
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-24 117.1 171 52.6
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.1e-24 117.1 195 54.4
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.5e-24 116.7 164 54.9
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 4.3e-24 115.2 154 46.1
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 4.3e-24 115.2 154 46.1
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 4.3e-24 115.2 154 46.1
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 4.3e-24 115.2 131 55.0
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 7.3e-24 114.4 145 49.7
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 2.8e-23 112.5 202 52.0
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 3.6e-23 112.1 132 54.5
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 6.2e-23 111.3 178 54.5
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.4e-22 110.2 167 43.1
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 1.4e-22 110.2 153 54.2
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 1.8e-22 109.8 163 57.1
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 1.8e-22 109.8 144 47.2
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 3.1e-22 109.0 147 61.2
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 4.0e-22 108.6 154 56.5
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 4.0e-22 108.6 130 51.5
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 4.0e-22 108.6 138 40.6
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 4.0e-22 108.6 132 43.9
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.2e-21 107.1 139 40.3
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 2.0e-21 106.3 163 41.1
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.6e-21 105.9 127 59.1
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 3.4e-21 105.5 163 42.9
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 3.4e-21 105.5 136 42.6
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 5.8e-21 104.8 149 40.3
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 5.8e-21 104.8 136 51.5
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 7.6e-21 104.4 149 58.4
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 9.9e-21 104.0 130 51.5
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 9.9e-21 104.0 149 53.7
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 9.9e-21 104.0 149 53.7
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 1.3e-20 103.6 130 50.0
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.7e-20 103.2 143 45.5
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 1.7e-20 103.2 128 46.9
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 2.9e-20 102.4 133 51.1
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 3.8e-20 102.1 133 47.4
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 6.4e-20 101.3 185 46.5
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 8.4e-20 100.9 184 51.1
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 8.4e-20 100.9 146 57.5
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 1.1e-19 100.5 137 57.7
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.4e-19 100.1 188 44.7
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 1.4e-19 100.1 141 58.2
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.9e-19 99.8 162 46.3
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.9e-19 99.8 162 46.3
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 1.9e-19 99.8 179 46.4
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 2.4e-19 99.4 156 54.5
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 2.4e-19 99.4 136 39.0
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 3.2e-19 99.0 135 50.4
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 5.4e-19 98.2 136 55.9
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 7.1e-19 97.8 158 44.9
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 9.3e-19 97.4 147 55.1
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.2e-18 97.1 132 60.6
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 1.2e-18 97.1 142 59.9
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.1e-18 96.3 132 50.0
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 2.7e-18 95.9 134 40.3
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 3.5e-18 95.5 139 57.6
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 4.6e-18 95.1 141 50.4
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 6.0e-18 94.7 189 49.2
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 7.8e-18 94.4 146 50.7
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 7.8e-18 94.4 130 60.8
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.3e-17 92.8 134 50.0
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 2.3e-17 92.8 143 55.2
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.3e-17 92.8 149 47.7
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 3.0e-17 92.4 151 47.0
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 3.0e-17 92.4 178 33.1
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 3.9e-17 92.0 141 41.8
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 3.9e-17 92.0 145 53.1
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.9e-17 92.0 152 46.1
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 5.1e-17 91.7 158 38.6
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 5.1e-17 91.7 151 48.3
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 5.1e-17 91.7 155 45.2
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 6.6e-17 91.3 137 58.4
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 8.7e-17 90.9 176 36.9
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 2.5e-16 89.4 151 45.7
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 2.5e-16 89.4 151 37.1
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 3.3e-16 89.0 144 43.1
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 3.3e-16 89.0 182 48.4
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 4.3e-16 88.6 135 49.6
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 5.6e-16 88.2 135 43.0
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 5.6e-16 88.2 141 56.7
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 5.6e-16 88.2 146 38.4
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 7.3e-16 87.8 122 52.5
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 1.6e-15 86.7 150 49.3
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.1e-15 86.3 130 50.8
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 2.1e-15 86.3 137 46.7
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.8e-15 85.9 141 56.0
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 3.6e-15 85.5 180 47.8
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 3.6e-15 85.5 156 40.4
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 4.8e-15 85.1 142 41.5
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 6.2e-15 84.7 161 43.5
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 8.1e-15 84.3 151 35.1
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 8.1e-15 84.3 126 45.2
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 8.1e-15 84.3 178 32.0
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.4e-14 83.6 152 43.4
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 1.4e-14 83.6 179 38.5
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.4e-14 83.6 139 36.0
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 1.8e-14 83.2 143 55.9
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 1.8e-14 83.2 148 35.1
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 2.4e-14 82.8 147 38.1
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 3.1e-14 82.4 132 60.6
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 4.0e-14 82.0 157 51.6
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.9e-14 81.3 149 51.0
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 6.9e-14 81.3 141 34.8
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 6.9e-14 81.3 151 31.8
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 9.0e-14 80.9 164 43.9
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 9.0e-14 80.9 140 55.7
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 1.2e-13 80.5 153 39.2
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 1.2e-13 80.5 165 33.9
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.0e-13 79.7 117 38.5
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.0e-13 79.7 172 46.5
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.3e-12 77.0 38 86.8
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.3e-12 77.0 161 33.5
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 2.2e-12 76.3 174 39.1
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 4.9e-12 75.1 182 45.6
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 6.4e-12 74.7 159 49.1
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.1e-11 73.9 118 36.4
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 1.9e-11 73.2 127 40.2
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 7.1e-11 71.2 157 49.7
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 7.9e-10 67.8 158 29.7
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 7.9e-10 67.8 131 46.6
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 7.9e-10 67.8 131 46.6
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.0e-09 67.4 103 46.6
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.0e-09 65.9 131 46.6
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 3.9e-09 65.5 126 31.0
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.5e-08 63.5 132 28.8
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.5e-08 63.5 122 32.8
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 2.5e-08 62.8 181 27.6
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.6e-07 60.1 158 26.6
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.4e-06 57.0 156 25.6


User provided reference genes

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