Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 5.4e-43 177.6 110 100.0
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 2.9e-28 128.6 134 71.6
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 2.9e-28 128.6 134 71.6
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 1.9e-27 125.9 134 70.1
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 1.9e-27 125.9 134 70.1
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 4.3e-24 114.8 134 49.3
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 5.4e-19 97.8 134 61.9
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.2e-18 96.7 150 53.3
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 2.7e-18 95.5 142 53.5
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 2.7e-18 95.5 142 52.1
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 3.9e-17 91.7 132 41.7
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.9e-17 91.7 131 51.9
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 5.1e-17 91.3 144 53.5
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 5.1e-17 91.3 144 53.5
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 6.6e-17 90.9 147 53.1
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.1e-16 90.1 142 37.3
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 1.9e-16 89.4 147 53.1
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 4.3e-16 88.2 145 53.8
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 4.3e-16 88.2 141 53.2
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 5.6e-16 87.8 145 41.4
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-15 86.7 151 36.4
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.1e-15 85.9 150 52.7
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-15 85.5 150 37.3
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 4.7e-15 84.7 144 36.1
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 1.1e-14 83.6 141 52.5
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 1.8e-14 82.8 157 35.7
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 1.8e-14 82.8 157 35.7
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 2.4e-14 82.4 41 85.4
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 2.4e-14 82.4 42 85.7
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 4.0e-14 81.6 133 43.6
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 6.9e-14 80.9 146 34.9
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 6.9e-14 80.9 42 81.0
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 6.9e-14 80.9 41 85.4
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 9.0e-14 80.5 41 82.9
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 9.0e-14 80.5 41 82.9
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-13 80.1 129 40.3
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-13 80.1 139 51.8
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 1.2e-13 80.1 129 40.3
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 2.6e-13 79.0 41 82.9
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 2.6e-13 79.0 41 80.5
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 4.4e-13 78.2 131 46.6
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 9.9e-13 77.0 38 86.8
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.3e-12 76.6 131 52.7
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 2.2e-12 75.9 132 51.5
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 2.2e-12 75.9 132 51.5
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 2.9e-12 75.5 126 39.7
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 2.9e-12 75.5 126 39.7
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 2.9e-12 75.5 126 39.7
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 3.8e-12 75.1 153 43.1
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 6.4e-12 74.3 141 32.6
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 1.9e-11 72.8 43 69.8
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.9e-11 72.8 42 73.8
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 1.9e-11 72.8 132 45.5
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 1.9e-11 72.8 42 73.8
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.4e-11 72.4 44 68.2
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 2.4e-11 72.4 44 70.5
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 2.4e-11 72.4 44 68.2
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 4.2e-11 71.6 42 76.2
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 4.2e-11 71.6 42 71.4
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 5.4e-11 71.2 42 71.4
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 5.4e-11 71.2 42 71.4
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 5.4e-11 71.2 44 65.9
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 5.4e-11 71.2 133 42.1
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 5.4e-11 71.2 44 65.9
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 5.4e-11 71.2 44 68.2
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 7.1e-11 70.9 40 77.5
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 7.1e-11 70.9 44 65.9
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 7.1e-11 70.9 42 71.4
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 7.1e-11 70.9 44 65.9
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 7.1e-11 70.9 44 68.2
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 7.1e-11 70.9 44 68.2
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 7.1e-11 70.9 44 68.2
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 7.1e-11 70.9 44 68.2
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 7.1e-11 70.9 41 70.7
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 7.1e-11 70.9 44 68.2
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 9.3e-11 70.5 34 85.3
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 9.3e-11 70.5 42 69.0
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 9.3e-11 70.5 43 65.1
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.2e-10 70.1 136 39.0
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.2e-10 70.1 44 65.9
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.2e-10 70.1 42 69.0
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 1.2e-10 70.1 42 69.0
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 1.6e-10 69.7 44 65.9
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 1.6e-10 69.7 38 73.7
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.6e-10 69.7 44 65.9
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 1.6e-10 69.7 42 69.0
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 2.7e-10 68.9 44 65.9
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 2.7e-10 68.9 42 66.7
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 3.5e-10 68.6 44 65.9
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 4.6e-10 68.2 43 69.8
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 4.6e-10 68.2 42 66.7
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 6.0e-10 67.8 44 63.6
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 7.8e-10 67.4 41 68.3
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 1.0e-09 67.0 42 61.9
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.0e-09 67.0 42 64.3
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 1.0e-09 67.0 36 75.0
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 1.0e-09 67.0 36 75.0
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 1.0e-09 67.0 36 75.0
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 1.0e-09 67.0 40 67.5
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 1.0e-09 67.0 42 66.7
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.3e-09 66.6 41 65.9
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.3e-09 66.6 40 67.5
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 1.3e-09 66.6 43 65.1
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 1.3e-09 66.6 42 64.3
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 1.3e-09 66.6 42 64.3
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 1.3e-09 66.6 40 67.5
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 1.7e-09 66.2 41 65.9
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 1.7e-09 66.2 40 70.0
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 2.3e-09 65.9 46 63.0
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 2.3e-09 65.9 46 65.2
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 3.9e-09 65.1 40 70.0
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.9e-09 65.1 44 61.4
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.9e-09 65.1 44 61.4
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 3.9e-09 65.1 44 61.4
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 5.1e-09 64.7 40 67.5
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 6.6e-09 64.3 42 64.3
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 6.6e-09 64.3 40 65.0
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 6.6e-09 64.3 45 64.4
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 1.1e-08 63.5 40 67.5
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 1.1e-08 63.5 35 71.4
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 1.1e-08 63.5 40 65.0
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.1e-08 63.5 37 70.3
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 1.5e-08 63.2 43 62.8
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.5e-08 63.2 44 56.8
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.9e-08 62.8 38 63.2
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 1.9e-08 62.8 44 59.1
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 2.5e-08 62.4 36 69.4
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.5e-08 62.4 40 60.0
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 2.5e-08 62.4 37 64.9
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 4.3e-08 61.6 42 59.5
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 4.3e-08 61.6 42 59.5
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 4.3e-08 61.6 42 57.1
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 5.6e-08 61.2 42 57.1
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 5.6e-08 61.2 36 66.7
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 5.6e-08 61.2 35 74.3
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 7.3e-08 60.8 38 65.8
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 9.6e-08 60.5 41 61.0
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 9.6e-08 60.5 38 65.8
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.3e-07 60.1 44 59.1
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.3e-07 60.1 136 47.8
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 1.3e-07 60.1 45 60.0
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 1.6e-07 59.7 40 65.0
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.1e-07 59.3 40 65.0
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 2.1e-07 59.3 40 65.0
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 2.8e-07 58.9 40 62.5
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 3.6e-07 58.5 39 59.0
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 3.6e-07 58.5 39 59.0
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 3.6e-07 58.5 35 62.9
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 3.6e-07 58.5 35 62.9
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 4.8e-07 58.2 39 56.4
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 4.8e-07 58.2 37 56.8
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 6.2e-07 57.8 37 59.5
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 1.4e-06 56.6 35 71.4
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 1.8e-06 56.2 33 63.6
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 1.8e-06 56.2 33 63.6
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 5.3e-06 54.7 44 54.5
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 9.0e-06 53.9 37 54.1


User provided reference genes

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