Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26590 Brassica carinata HOM05D049173 ORTHO05D039582 1.1e-57 226.5 116 100.0
BolC5t31353H Brassica oleracea HOM05D049173 ORTHO05D039582 5.3e-25 117.9 56 100.0
BolC5t31346H Brassica oleracea HOM05D003669 ORTHO05D005046 8.0e-21 104.0 56 98.2
BolC5t31350H Brassica oleracea HOM05D003669 ORTHO05D005046 8.0e-21 104.0 56 98.2
BcaC05g26402 Brassica carinata HOM05D003669 ORTHO05D005046 8.0e-13 77.4 91 60.4
C05p24360 Brassica napus HOM05D003669 ORTHO05D005046 8.0e-13 77.4 91 60.4
A09p40060 Brassica napus HOM05D003669 ORTHO05D005046 2.3e-12 75.9 91 59.3
BraA09t39502Z Brassica rapa HOM05D003669 ORTHO05D005046 2.3e-12 75.9 91 59.3
BolC5t31170H Brassica oleracea HOM05D003669 ORTHO05D005046 3.0e-12 75.5 91 59.3
AT1G26650 Arabidopsis thaliana HOM05D003669 ORTHO05D005046 8.8e-12 73.9 70 67.1
Carub.0001s2438 Capsella rubella HOM05D003669 ORTHO05D005046 1.2e-11 73.6 70 67.1
SpUn0008_0120 Schrenkiella parvula HOM05D003669 ORTHO05D005046 1.5e-11 73.2 91 59.3
SpUn0019_0020 Schrenkiella parvula HOM05D003669 ORTHO05D005046 1.5e-11 73.2 91 59.3
SpUn0296_0010 Schrenkiella parvula HOM05D003669 ORTHO05D005046 1.5e-11 73.2 91 59.3
Thhalv10008119m.g Eutrema salsugineum HOM05D003669 ORTHO05D005046 2.0e-11 72.8 91 58.2
AL1G39080 Arabidopsis lyrata HOM05D003669 ORTHO05D005046 2.6e-11 72.4 70 64.3
CARHR025320 Cardamine hirsuta HOM05D003669 ORTHO05D005046 5.7e-11 71.2 81 60.5
Aa31LG7G8440 Aethionema arabicum HOM05D003669 ORTHO05D005046 1.8e-09 66.2 70 57.1
THA.LOC104808637 Tarenaya hassleriana HOM05D003669 ORTHO05D005046 3.1e-09 65.5 71 59.2
THA.LOC104822182 Tarenaya hassleriana HOM05D003669 ORTHO05D005046 5.4e-09 64.7 81 58.0
RcHm_v2.0_Chr7g0221801 Rosa chinensis HOM05D003669 ORTHO05D005046 7.0e-09 64.3 73 57.5
FvH4_5g29140 Fragaria vesca HOM05D003669 ORTHO05D005046 2.7e-08 62.4 71 53.5
FAN04G2355 Fragaria x ananassa HOM05D003669 ORTHO05D005046 2.7e-08 62.4 71 53.5
FAN08G0960 Fragaria x ananassa HOM05D003669 ORTHO05D005046 2.7e-08 62.4 71 53.5
FAN18G1113 Fragaria x ananassa HOM05D003669 ORTHO05D005046 2.7e-08 62.4 71 53.5
Aa31LG4G11440 Aethionema arabicum HOM05D003669 ORTHO05D005046 3.5e-08 62.0 69 55.1
THA.LOC104822905 Tarenaya hassleriana HOM05D003669 ORTHO05D005046 3.5e-08 62.0 70 54.3
FAN13G0674 Fragaria x ananassa HOM05D003669 ORTHO05D005046 5.9e-08 61.2 71 52.1
AL2G28540 Arabidopsis lyrata HOM05D003669 ORTHO05D005046 7.7e-08 60.8 70 54.3
AT1G69430 Arabidopsis thaliana HOM05D003669 ORTHO05D005046 7.7e-08 60.8 70 54.3
Carub.0002s1603 Capsella rubella HOM05D003669 ORTHO05D005046 7.7e-08 60.8 70 54.3
CARHR062320 Cardamine hirsuta HOM05D003669 ORTHO05D005046 7.7e-08 60.8 70 54.3
Thhalv10018794m.g Eutrema salsugineum HOM05D003669 ORTHO05D005046 1.0e-07 60.5 70 54.3
Thecc.02G339000 Theobroma cacao HOM05D003669 ORTHO05D005046 1.3e-07 60.1 81 51.9
COL.COLO4_27966 Corchorus olitorius HOM05D003669 ORTHO05D005046 2.9e-07 58.9 81 49.4
Duzib248G1252 Durio zibethinus HOM05D003669 ORTHO05D005046 3.8e-07 58.5 81 51.9
Atru.chr11.1711 Acer truncatum HOM05D003669 ORTHO05D005046 1.1e-06 57.0 89 44.9
Duzib251G0808 Durio zibethinus HOM05D003669 ORTHO05D005046 1.1e-06 57.0 81 50.6
BcaB03g14707 Brassica carinata HOM05D003669 ORTHO05D005046 1.5e-06 56.6 70 51.4
A07p35780 Brassica napus HOM05D003669 ORTHO05D005046 1.5e-06 56.6 70 50.0
BraA07t31164Z Brassica rapa HOM05D003669 ORTHO05D005046 1.5e-06 56.6 70 50.0
C06p40420 Brassica napus HOM05D003669 ORTHO05D005046 1.9e-06 56.2 70 50.0
BolC6t39390H Brassica oleracea HOM05D003669 ORTHO05D005046 1.9e-06 56.2 70 50.0
Duzib268G1480 Durio zibethinus HOM05D003669 ORTHO05D005046 2.5e-06 55.8 81 49.4
Rhsim12G0133100 Rhododendron simsii HOM05D003669 ORTHO05D005046 2.5e-06 55.8 70 51.4
DCAR_023812 Daucus carota HOM05D003669 ORTHO05D005046 3.3e-06 55.5 70 48.6
MD16G1066800 Malus domestica HOM05D003669 ORTHO05D005046 3.3e-06 55.5 70 47.1
Cpa.g.sc1.72 Carica papaya HOM05D003669 ORTHO05D005046 7.2e-06 54.3 81 49.4
Prupe.1G280100 Prunus persica HOM05D003669 ORTHO05D005046 7.2e-06 54.3 70 47.1
Eucgr.B03191 Eucalyptus grandis HOM05D003669 ORTHO05D005046 9.5e-06 53.9 81 45.7
Hma1.2p1_0354F.1_g133780 Hydrangea macrophylla HOM05D003669 ORTHO05D005046 9.5e-06 53.9 81 48.1


User provided reference genes

Program Settings