Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26559 Brassica carinata HOM05D000147 ORTHO05D039487 8.2e-55 216.9 113 100.0
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 9.2e-22 107.1 79 70.9
C05p26140 Brassica napus HOM05D000147 ORTHO05D039487 1.0e-20 103.6 58 93.1
Sp1g01890 Schrenkiella parvula HOM05D000147 ORTHO05D001254 2.0e-16 89.4 82 64.6
BolC5t28934H Brassica oleracea HOM05D000147 ORTHO05D001254 7.5e-16 87.4 73 65.8
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 7.5e-16 87.4 73 65.8
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.7e-15 86.3 73 64.4
AT1G02890 Arabidopsis thaliana HOM05D000147 ORTHO05D001254 2.9e-15 85.5 81 64.2
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.4e-14 83.2 74 64.9
AL1G12330 Arabidopsis lyrata HOM05D000147 ORTHO05D001254 2.4e-14 82.4 81 63.0
A09p68470 Brassica napus HOM05D000147 ORTHO05D001254 2.4e-14 82.4 82 59.8
BcaC05g24630 Brassica carinata HOM05D000147 ORTHO05D001254 7.0e-14 80.9 74 63.5
Thhalv10006579m.g Eutrema salsugineum HOM05D000147 ORTHO05D001254 7.0e-14 80.9 82 63.4
BcaC07g42297 Brassica carinata HOM05D000147 ORTHO05D001254 9.2e-14 80.5 82 58.5
CARHR002240 Cardamine hirsuta HOM05D000147 ORTHO05D001254 1.2e-13 80.1 72 63.9
THA.LOC104825975 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 5.0e-12 74.7 102 49.0
BolC9t53132H Brassica oleracea HOM05D000147 ORTHO05D001254 6.6e-12 74.3 85 56.5
THA.LOC104815931 Tarenaya hassleriana HOM05D000147 ORTHO05D001254 6.6e-12 74.3 78 57.7
BraA09t35843Z Brassica rapa HOM05D000147 ORTHO05D001254 1.1e-11 73.6 85 55.3
BcaB01g02461 Brassica carinata HOM05D000147 ORTHO05D001254 1.9e-11 72.8 81 58.0
BolC2t09916H Brassica oleracea HOM05D000147 ORTHO05D001254 1.9e-11 72.8 96 50.0
BcaC03g16129 Brassica carinata HOM05D000147 ORTHO05D001254 3.3e-11 72.0 81 56.8
BcaNung04057 Brassica carinata HOM05D000147 ORTHO05D001254 3.3e-11 72.0 82 57.3
A03p31040 Brassica napus HOM05D000147 ORTHO05D001254 3.3e-11 72.0 86 53.5
A09p01930 Brassica napus HOM05D000147 ORTHO05D001254 3.3e-11 72.0 82 57.3
C02p39060 Brassica napus HOM05D000147 ORTHO05D001254 3.3e-11 72.0 81 56.8
C03p37830 Brassica napus HOM05D000147 ORTHO05D001254 3.3e-11 72.0 86 53.5
C09p02020 Brassica napus HOM05D000147 ORTHO05D001254 3.3e-11 72.0 82 57.3
BolC3t16072H Brassica oleracea HOM05D000147 ORTHO05D001254 3.3e-11 72.0 86 53.5
BraA03t12281Z Brassica rapa HOM05D000147 ORTHO05D001254 3.3e-11 72.0 86 53.5
Sp6g02380 Schrenkiella parvula HOM05D000147 ORTHO05D001254 4.3e-11 71.6 101 50.5
CARHR250770 Cardamine hirsuta HOM05D000147 ORTHO05D001254 7.3e-11 70.9 81 56.8
Carub.0006s3466 Capsella rubella HOM05D000147 ORTHO05D001254 9.5e-11 70.5 81 55.6
AL6G50580 Arabidopsis lyrata HOM05D000147 ORTHO05D001254 1.2e-10 70.1 81 55.6
AT4G02480 Arabidopsis thaliana HOM05D000147 ORTHO05D001254 1.2e-10 70.1 81 55.6
BcaB04g16941 Brassica carinata HOM05D000147 ORTHO05D023783 1.6e-10 69.7 77 54.5
BraA02t07462Z Brassica rapa HOM05D000147 ORTHO05D001254 1.6e-10 69.7 104 46.2
BcaC01g06754 Brassica carinata HOM05D000147 ORTHO05D001254 2.1e-10 69.3 81 55.6
Thecc.01G297700 Theobroma cacao HOM05D000147 ORTHO05D001254 2.8e-10 68.9 81 50.6
BcaB01g02037 Brassica carinata HOM05D000147 ORTHO05D001254 3.6e-10 68.6 81 55.6
BcaNung04060 Brassica carinata HOM05D000147 ORTHO05D001254 3.6e-10 68.6 81 55.6
A02p24760 Brassica napus HOM05D000147 ORTHO05D001254 1.4e-09 66.6 101 48.5
Gohir.A11G115000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 1.8e-09 66.2 81 53.1
Gohir.D11G120000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 1.8e-09 66.2 81 53.1
Gorai.007G128700 Gossypium raimondii HOM05D000147 ORTHO05D001254 1.8e-09 66.2 81 53.1
TWI14G0377 Tripterygium wilfordii HOM05D000147 ORTHO05D001254 2.3e-09 65.9 81 49.4
Duzib138G0484 Durio zibethinus HOM05D000147 ORTHO05D001254 3.1e-09 65.5 81 53.1
Thhalv10028366m.g Eutrema salsugineum HOM05D000147 ORTHO05D001254 4.0e-09 65.1 102 49.0
Cpa.g.sc9.217 Carica papaya HOM05D000147 ORTHO05D001254 1.5e-08 63.2 72 51.4
Gorai.004G089000 Gossypium raimondii HOM05D000147 ORTHO05D001254 1.5e-08 63.2 81 50.6
TWI59G0815 Tripterygium wilfordii HOM05D000147 ORTHO05D001254 1.5e-08 63.2 73 50.7
Duzib133G1165 Durio zibethinus HOM05D000147 ORTHO05D001254 2.0e-08 62.8 81 49.4
Gohir.A08G101000 Gossypium hirsutum HOM05D000147 ORTHO05D001254 2.0e-08 62.8 81 50.6
Gohir.A08G101080 Gossypium hirsutum HOM05D000147 ORTHO05D001254 2.0e-08 62.8 81 50.6
COL.COLO4_23369 Corchorus olitorius HOM05D000147 ORTHO05D001254 3.4e-08 62.0 81 53.1
A06p21750 Brassica napus HOM05D000147 ORTHO05D042651 4.4e-08 61.6 81 48.1
Lj5g0023933 Lotus japonicus HOM05D000147 ORTHO05D001254 4.4e-08 61.6 82 50.0
Aa31LG5G2110 Aethionema arabicum HOM05D000147 ORTHO05D001254 5.8e-08 61.2 97 46.4
Gohir.D08G084600 Gossypium hirsutum HOM05D000147 ORTHO05D001254 7.5e-08 60.8 81 49.4
Prupe.8G259000 Prunus persica HOM05D000147 ORTHO05D001254 4.9e-07 58.2 81 48.1
arahy.Tifrunner.gnm1.ann1.KU25FL Arachis hypogaea HOM05D000147 ORTHO05D001254 6.4e-07 57.8 82 48.8
arahy.Tifrunner.gnm1.ann1.PHSJ1F Arachis hypogaea HOM05D000147 ORTHO05D001254 6.4e-07 57.8 82 48.8
Potri.014G131000 Populus trichocarpa HOM05D000147 ORTHO05D001254 6.4e-07 57.8 82 47.6
FvH4_2g25490 Fragaria vesca HOM05D000147 ORTHO05D001254 1.4e-06 56.6 81 44.4
Lj5g0001900 Lotus japonicus HOM05D000147 ORTHO05D001254 1.4e-06 56.6 82 48.8
Manes.01G217300 Manihot esculenta HOM05D000147 ORTHO05D001254 1.4e-06 56.6 81 46.9
arahy.Tifrunner.gnm1.ann1.7B3JMU Arachis hypogaea HOM05D000147 ORTHO05D023783 1.9e-06 56.2 73 49.3
Ca_10351_v3 Cicer arietinum L. HOM05D000147 ORTHO05D001254 2.4e-06 55.8 81 49.4
RcHm_v2.0_Chr6g0293701 Rosa chinensis HOM05D000147 ORTHO05D001254 2.4e-06 55.8 85 43.5
Sed0027983 Sechium edule HOM05D000147 ORTHO05D001254 2.4e-06 55.8 84 45.2
Ciclev10018538m.g Citrus clementina HOM05D000147 ORTHO05D001254 3.2e-06 55.5 72 45.8
Rhsim01G0284000 Rhododendron simsii HOM05D000147 ORTHO05D001254 3.2e-06 55.5 68 50.0
Lalb_Chr06g0163411 Lupinus albus HOM05D000147 ORTHO05D001254 4.1e-06 55.1 82 48.8
Medtr1g088750 Medicago truncatula HOM05D000147 ORTHO05D001254 4.1e-06 55.1 81 49.4
Dinv33035 Davidia involucrata HOM05D000147 ORTHO05D001254 5.4e-06 54.7 81 48.1
Glyma.02G155100 Glycine max HOM05D000147 ORTHO05D001254 7.1e-06 54.3 81 49.4
VMungo0720G1422 Vigna mungo HOM05D000147 ORTHO05D001254 7.1e-06 54.3 81 48.1
CiPaw.08G097000 Carya illinoinensis HOM05D000147 ORTHO05D001254 9.2e-06 53.9 65 52.3
Cc01_g20700 Coffea canephora HOM05D000147 ORTHO05D001254 9.2e-06 53.9 81 48.1
Nitab4.5_0000619g0180 Nicotiana tabacum HOM05D000147 ORTHO05D001254 9.2e-06 53.9 81 44.4
Nitab4.5_0002469g0030 Nicotiana tabacum HOM05D000147 ORTHO05D001254 9.2e-06 53.9 81 44.4
vmacro14996 Vaccinium macrocarpon HOM05D000147 ORTHO05D001254 9.2e-06 53.9 67 49.3


User provided reference genes

Program Settings