Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26545 Brassica carinata HOM05D006962 ORTHO05D008696 1.6e-101 372.9 198 100.0
BolC5t31319H Brassica oleracea HOM05D006962 ORTHO05D008696 3.0e-100 368.6 198 98.5
C05p26000 Brassica napus HOM05D006962 ORTHO05D008696 8.6e-100 367.1 198 98.0
A09p38640 Brassica napus HOM05D006962 ORTHO05D008696 6.4e-95 350.9 202 93.6
BraA09t39370Z Brassica rapa HOM05D006962 ORTHO05D008696 6.4e-95 350.9 202 93.6
BcaC05g26736 Brassica carinata HOM05D006962 ORTHO05D008696 1.8e-89 332.8 202 87.1
BcaNung06812 Brassica carinata HOM05D006962 ORTHO05D008696 6.9e-73 277.7 203 77.3
Sp1g23540 Schrenkiella parvula HOM05D006962 ORTHO05D008696 1.5e-72 276.6 201 75.1
C07p17910 Brassica napus HOM05D006962 ORTHO05D008696 2.9e-71 272.3 202 74.8
BolC7t42297H Brassica oleracea HOM05D006962 ORTHO05D008696 3.2e-70 268.9 202 74.3
Thhalv10008828m.g Eutrema salsugineum HOM05D006962 ORTHO05D008696 5.6e-67 258.1 205 72.7
AL1G40700 Arabidopsis lyrata HOM05D006962 ORTHO05D008696 3.8e-63 245.4 200 67.0
A07p11980 Brassica napus HOM05D006962 ORTHO05D008696 3.2e-62 242.3 203 70.0
BraA07t28983Z Brassica rapa HOM05D006962 ORTHO05D008696 1.2e-61 240.4 203 69.5
BcaB03g14005 Brassica carinata HOM05D006962 ORTHO05D008696 5.1e-60 235.0 203 67.0
Aa31LG7G9900 Aethionema arabicum HOM05D006962 ORTHO05D008696 2.7e-53 212.6 198 61.1
CARHR026870 Cardamine hirsuta HOM05D006962 ORTHO05D008696 3.5e-53 212.2 209 59.3
Carub.0001s2583 Capsella rubella HOM05D006962 ORTHO05D008696 1.0e-52 210.7 203 57.6
AT1G27300 Arabidopsis thaliana HOM05D006962 ORTHO05D008696 9.7e-51 204.1 202 57.9
THA.LOC104807506 Tarenaya hassleriana HOM05D006962 ORTHO05D008696 5.5e-46 188.3 215 51.6
Gohir.A04G140400 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.5e-22 110.5 180 38.3
Duzib251G0823 Durio zibethinus HOM05D006962 ORTHO05D008696 6.1e-21 105.1 184 39.7
Gohir.D04G183600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.4e-20 104.0 180 37.8
Potri.003G170700 Populus trichocarpa HOM05D006962 ORTHO05D008696 3.0e-20 102.8 160 41.2
Gorai.012G176600 Gossypium raimondii HOM05D006962 ORTHO05D008696 6.8e-20 101.7 180 37.8
TAR629G1477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.2e-19 100.9 165 38.8
Cfa009377 Carpinus fangiana HOM05D006962 ORTHO05D008696 1.5e-19 100.5 163 41.7
CiPaw.05G108100 Carya illinoinensis HOM05D006962 ORTHO05D008696 1.5e-19 100.5 163 38.7
Sabra03G0124800 Salix brachista HOM05D006962 ORTHO05D008696 4.4e-19 99.0 159 37.7
FvH4_4g23570 Fragaria vesca HOM05D006962 ORTHO05D008696 9.8e-19 97.8 164 40.9
Haze_12436 Corylus avellana HOM05D006962 ORTHO05D008696 6.3e-18 95.1 164 38.4
RcHm_v2.0_Chr4g0429971 Rosa chinensis HOM05D006962 ORTHO05D008696 6.3e-18 95.1 156 42.3
Sc14g0009120 Simmondsia chinensis HOM05D006962 ORTHO05D008696 6.3e-18 95.1 151 40.4
CSS0033119 Camellia sinensis var. sinensis HOM05D006962 ORTHO05D008696 8.3e-18 94.7 184 34.8
PGR102G1052 Punica granatum HOM05D006962 ORTHO05D008696 1.4e-17 94.0 158 38.0
Thecc.02G205200 Theobroma cacao HOM05D006962 ORTHO05D008696 2.4e-17 93.2 203 34.0
TWI75G0385 Tripterygium wilfordii HOM05D006962 ORTHO05D008696 4.1e-17 92.4 208 31.7
QL03p052240 Quercus lobata HOM05D006962 ORTHO05D008696 5.4e-17 92.0 187 37.4
COL.COLO4_20424 Corchorus olitorius HOM05D006962 ORTHO05D008696 1.2e-16 90.9 152 36.8
TAR636G2109 Trochodendron aralioides HOM05D006962 ORTHO05D008696 1.2e-16 90.9 160 38.1
Manes.13G010300 Manihot esculenta HOM05D006962 ORTHO05D008696 1.6e-16 90.5 202 33.7
Potri.001G057700 Populus trichocarpa HOM05D006962 ORTHO05D008696 1.6e-16 90.5 150 39.3
Sabra01G0041700 Salix brachista HOM05D000660 ORTHO05D000766 3.5e-16 89.4 179 35.8
MSTRG.13306 Avicennia marina HOM05D006962 ORTHO05D008696 7.7e-16 88.2 211 34.6
MELO3C022311.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.3e-15 87.4 174 33.9
ClCG06G002190 Citrullus lanatus HOM05D006962 ORTHO05D008696 1.7e-15 87.0 174 33.9
MBI07_g28246_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 1.7e-15 87.0 165 35.2
Dinv17575 Davidia involucrata HOM05D006962 ORTHO05D008696 2.2e-15 86.7 162 35.8
MBI07_g11269_MAGBIO Magnolia biondii HOM05D006962 ORTHO05D008696 2.2e-15 86.7 167 37.1
Cc11_g17050 Coffea canephora HOM05D006962 ORTHO05D008696 2.9e-15 86.3 192 34.9
Nitab4.5_0006369g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 2.9e-15 86.3 224 32.6
Gohir.A03G124600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 5.0e-15 85.5 161 34.8
GSVIVG01010505001 Vitis vinifera HOM05D006962 ORTHO05D008696 8.5e-15 84.7 195 34.4
Ciclev10032798m.g Citrus clementina HOM05D006962 ORTHO05D008696 1.1e-14 84.3 181 32.6
Nitab4.5_0000996g0010 Nicotiana tabacum HOM05D006962 ORTHO05D008696 1.1e-14 84.3 222 32.9
Gohir.D02G147600 Gossypium hirsutum HOM05D006962 ORTHO05D008696 1.9e-14 83.6 157 35.0
Prupe.1G224100 Prunus persica HOM05D006962 ORTHO05D008696 1.9e-14 83.6 202 31.2
CANSAT01G0828 Cannabis sativa HOM05D006962 ORTHO05D008696 2.5e-14 83.2 187 34.2
CsaV3_6G008260 Cucumis sativus L. HOM05D006962 ORTHO05D008696 2.5e-14 83.2 151 35.1
Peaxi162Scf00128g01332 Petunia axillaris HOM05D006962 ORTHO05D008696 4.2e-14 82.4 138 38.4
Gorai.005G165400 Gossypium raimondii HOM05D006962 ORTHO05D008696 2.1e-13 80.1 157 33.8
arahy.Tifrunner.gnm1.ann1.AWLH2F Arachis hypogaea HOM05D006962 ORTHO05D008696 2.7e-13 79.7 162 37.7
ClCG07G015460 Citrullus lanatus HOM05D006962 ORTHO05D008696 3.6e-13 79.3 148 36.5
Eucgr.B03508 Eucalyptus grandis HOM05D006962 ORTHO05D008696 3.6e-13 79.3 174 33.3
Hund25473 Selenicereus undatus HOM05D006962 ORTHO05D008696 3.6e-13 79.3 195 32.3
HanXRQChr08g0214941 Helianthus annuus HOM05D006962 ORTHO05D008696 8.0e-13 78.2 148 37.8
Ah.03g136040 Amaranthus hybridus HOM05D006962 ORTHO05D008696 5.2e-12 75.5 183 33.9
Cpa.g.sc43.75 Carica papaya HOM05D006962 ORTHO05D008696 8.8e-12 74.7 142 33.8
Nn3g16434 Nelumbo nucifera HOM05D006962 ORTHO05D008696 8.8e-12 74.7 167 32.3
PGSC0003DMG400034312 Solanum tuberosum HOM05D006962 ORTHO05D008696 8.8e-12 74.7 211 30.8
Sed0011154 Sechium edule HOM05D006962 ORTHO05D008696 1.2e-11 74.3 83 42.2
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 2.0e-11 73.6 143 35.0
CDE05G3434 Ceratophyllum demersum HOM05D006962 ORTHO05D008696 2.0e-11 73.6 164 31.7
TPR.G17769 Trifolium pratense HOM05D006962 ORTHO05D008696 3.4e-11 72.8 205 28.3
VMungo1383G1469 Vigna mungo HOM05D006962 ORTHO05D008696 5.7e-11 72.0 182 34.1
Migut.E00010 Erythranthe guttata HOM05D006962 ORTHO05D008696 7.5e-11 71.6 167 32.9
Psat5g097440 Pisum sativum HOM05D006962 ORTHO05D008696 9.8e-11 71.2 206 31.6
Solyc05g015640.3 Solanum lycopersicum HOM05D006962 ORTHO05D008696 9.8e-11 71.2 213 31.5
AUR62028912 Chenopodium quinoa HOM05D006962 ORTHO05D008696 1.3e-10 70.9 129 34.9
Lsat_1_v5_gn_4_641 Lactuca sativa HOM05D006962 ORTHO05D008696 1.3e-10 70.9 194 32.0
Phvul.001G262900 Phaseolus vulgaris HOM05D006962 ORTHO05D008696 1.3e-10 70.9 159 35.2
Sopen05g011100 Solanum pennellii HOM05D006962 ORTHO05D008696 1.7e-10 70.5 159 33.3
Glyma.18G005200 Glycine max HOM05D006962 ORTHO05D008696 2.8e-10 69.7 178 31.5
MD16G1121100 Malus domestica HOM05D006962 ORTHO05D008696 2.8e-10 69.7 163 33.1
Aqoxy3G01577 Aquilegia oxysepala HOM05D006962 ORTHO05D008696 4.9e-10 68.9 151 35.1
AUR62005637 Chenopodium quinoa HOM05D006962 ORTHO05D008696 4.9e-10 68.9 126 33.3
ECA234G1956 Erigeron canadensis HOM05D006962 ORTHO05D008696 1.1e-09 67.8 119 37.8
Rhsim12G0024900 Rhododendron simsii HOM05D006962 ORTHO05D008696 1.4e-09 67.4 186 27.4
Zm00001eb241800 Zea mays HOM05D006962 ORTHO05D008696 1.4e-09 67.4 155 31.6
CsaV3_4G003050 Cucumis sativus L. HOM05D006962 ORTHO05D008696 2.4e-09 66.6 142 34.5
Medtr3g085060 Medicago truncatula HOM05D006962 ORTHO05D008696 2.4e-09 66.6 173 32.9
PSO478G2808 Papaver somniferum HOM05D006962 ORTHO05D008696 2.4e-09 66.6 121 33.1
Lj6g0020338 Lotus japonicus HOM05D006962 ORTHO05D008696 3.1e-09 66.2 148 31.1
Ca_16448_v3 Cicer arietinum L. HOM05D006962 ORTHO05D008696 4.1e-09 65.9 185 29.2
PSO017G7099 Papaver somniferum HOM05D006962 ORTHO05D008696 5.4e-09 65.5 121 33.1
HPP92_023534 Vanilla planifolia HOM05D006962 ORTHO05D008696 5.4e-09 65.5 161 26.7
DCAR_007000 Daucus carota HOM05D006962 ORTHO05D008696 7.0e-09 65.1 182 33.5
Gohir.D03G043133 Gossypium hirsutum HOM05D006962 ORTHO05D008696 9.2e-09 64.7 78 41.0
Atru.chr11.2343 Acer truncatum HOM05D006962 ORTHO05D008696 1.6e-08 63.9 158 29.1
Actinidia08062 Actinidia chinensis HOM05D006962 ORTHO05D008696 2.0e-08 63.5 153 33.3
Hma1.2p1_0657F.1_g197165 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 3.5e-08 62.8 62 50.0
Hma1.2p1_0967F.1_g242360 Hydrangea macrophylla HOM05D006962 ORTHO05D008696 3.5e-08 62.8 62 50.0
TAR629G0477 Trochodendron aralioides HOM05D006962 ORTHO05D008696 4.5e-08 62.4 103 39.8
Zm00001eb180910 Zea mays HOM05D006962 ORTHO05D008696 5.9e-08 62.0 144 30.6
Os02g0509600 Oryza sativa ssp. japonica HOM05D006962 ORTHO05D008696 7.7e-08 61.6 102 34.3
MELO3C032628.2 Cucumis melo HOM05D006962 ORTHO05D008696 1.3e-07 60.8 99 40.4
Gorai.003G044100 Gossypium raimondii HOM05D006962 ORTHO05D008696 1.3e-07 60.8 78 41.0
Lalb_Chr23g0278151 Lupinus albus HOM05D006962 ORTHO05D008696 1.3e-07 60.8 162 28.4
SGA_v2.0_scaffold87G27164 Striga asiatica HOM05D006962 ORTHO05D008696 1.3e-07 60.8 125 37.6
ATR0561G196 Amborella trichopoda HOM05D006962 ORTHO05D008696 1.5e-06 57.4 97 32.0


User provided reference genes

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