Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26525 Brassica carinata HOM05D007441 ORTHO05D009501 2.2e-61 238.8 124 100.0
BolC5t31303H Brassica oleracea HOM05D007441 ORTHO05D009501 2.2e-61 238.8 124 100.0
BcaC05g26717 Brassica carinata HOM05D007441 ORTHO05D009501 3.0e-58 228.4 124 94.4
C05p25830 Brassica napus HOM05D007441 ORTHO05D009501 6.7e-58 227.3 124 96.0
A09p38770 Brassica napus HOM05D007441 ORTHO05D009501 7.6e-54 213.8 124 90.3
BraA09t39385Z Brassica rapa HOM05D007441 ORTHO05D009501 7.6e-54 213.8 124 90.3
Sp1g23350 Schrenkiella parvula HOM05D007441 ORTHO05D009501 6.5e-53 210.7 124 85.5
BcaC05g26720 Brassica carinata HOM05D007441 ORTHO05D009501 1.9e-52 209.1 124 90.3
Thhalv10008862m.g Eutrema salsugineum HOM05D007441 ORTHO05D009501 2.5e-52 208.8 124 83.9
AL1G40490 Arabidopsis lyrata HOM05D007441 ORTHO05D009501 2.7e-51 205.3 124 83.1
Carub.0001s2566 Capsella rubella HOM05D007441 ORTHO05D009501 1.8e-50 202.6 124 82.3
AT1G24450 Arabidopsis thaliana HOM05D007441 ORTHO05D009501 4.3e-49 198.0 124 80.6
CARHR026680 Cardamine hirsuta HOM05D007441 ORTHO05D009501 9.7e-49 196.8 124 77.4
THA.LOC104809273 Tarenaya hassleriana HOM05D007441 ORTHO05D009501 3.2e-44 181.8 121 72.7
Duzib205G0170 Durio zibethinus HOM05D007441 ORTHO05D009501 3.3e-41 171.8 122 68.0
Aa31LG7G9580 Aethionema arabicum HOM05D007441 ORTHO05D009501 6.3e-40 167.5 119 71.4
BcaC06g35265 Brassica carinata HOM05D007441 ORTHO05D009501 1.4e-39 166.4 103 84.5
C07p18070 Brassica napus HOM05D007441 ORTHO05D009501 1.4e-39 166.4 103 84.5
Duzib084G0400 Durio zibethinus HOM05D007441 ORTHO05D009501 3.8e-37 158.3 115 64.3
CSS0037538 Camellia sinensis var. sinensis HOM05D007441 ORTHO05D009501 1.9e-36 156.0 122 60.7
Actinidia19093 Actinidia chinensis HOM05D007441 ORTHO05D009501 5.5e-36 154.5 121 62.0
Glyma.17G091300 Glycine max HOM05D007441 ORTHO05D009501 5.5e-36 154.5 119 63.9
Lj9A451T94 Lonicera japonica HOM05D007441 ORTHO05D009501 5.5e-36 154.5 115 63.5
GSVIVG01007790001 Vitis vinifera HOM05D007441 ORTHO05D009501 5.5e-36 154.5 117 65.0
FvH4_5g05090 Fragaria vesca HOM05D007441 ORTHO05D009501 1.2e-35 153.3 122 58.2
FAN18G4363 Fragaria x ananassa HOM05D007441 ORTHO05D009501 1.2e-35 153.3 122 58.2
FAN04G2715 Fragaria x ananassa HOM05D007441 ORTHO05D009501 2.1e-35 152.5 122 56.6
Phvul.003G198700 Phaseolus vulgaris HOM05D007441 ORTHO05D009501 3.6e-35 151.8 122 58.2
EL10Ac5g10787 Beta vulgaris HOM05D007441 ORTHO05D009501 4.7e-35 151.4 116 65.5
BolC7t42316H Brassica oleracea HOM05D007441 ORTHO05D009501 6.1e-35 151.0 95 83.2
arahy.Tifrunner.gnm1.ann1.DR4P4T Arachis hypogaea HOM05D007441 ORTHO05D009501 7.9e-35 150.6 122 57.4
Thecc.03G008500 Theobroma cacao HOM05D007441 ORTHO05D009501 7.9e-35 150.6 122 60.7
Sc04g0001930 Simmondsia chinensis HOM05D007441 ORTHO05D009501 1.0e-34 150.2 129 57.4
Lj4g0018861 Lotus japonicus HOM05D007441 ORTHO05D009501 1.4e-34 149.8 113 63.7
Prupe.5G176500 Prunus persica HOM05D007441 ORTHO05D009501 1.8e-34 149.4 117 61.5
VMungo1215G1307 Vigna mungo HOM05D007441 ORTHO05D009501 1.8e-34 149.4 122 57.4
arahy.Tifrunner.gnm1.ann1.01HJP6 Arachis hypogaea HOM05D007441 ORTHO05D009501 2.3e-34 149.1 122 56.6
Sabra12G0056200 Salix brachista HOM05D007441 ORTHO05D009501 2.3e-34 149.1 118 62.7
RcHm_v2.0_Chr7g0193911 Rosa chinensis HOM05D007441 ORTHO05D009501 3.9e-34 148.3 122 57.4
FAN13G3077 Fragaria x ananassa HOM05D007441 ORTHO05D009501 5.1e-34 147.9 122 55.7
Lsat_1_v5_gn_1_26521 Lactuca sativa HOM05D007441 ORTHO05D009501 1.1e-33 146.7 119 58.0
Potri.012G078400 Populus trichocarpa HOM05D007441 ORTHO05D009501 2.0e-33 146.0 122 59.0
AUR62008240 Chenopodium quinoa HOM05D007441 ORTHO05D009501 2.6e-33 145.6 116 62.1
AUR62030992 Chenopodium quinoa HOM05D007441 ORTHO05D009501 2.6e-33 145.6 116 62.1
CiPaw.11G029400 Carya illinoinensis HOM05D007441 ORTHO05D009501 4.4e-33 144.8 121 57.9
DCAR_031307 Daucus carota HOM05D007441 ORTHO05D009501 4.4e-33 144.8 122 59.0
Hma1.2p1_0176F.1_g077710 Hydrangea macrophylla HOM05D007441 ORTHO05D009501 4.4e-33 144.8 124 57.3
MD14G1183800 Malus domestica HOM05D007441 ORTHO05D009501 4.4e-33 144.8 117 58.1
Oeu016356.1 Olea europaea HOM05D007441 ORTHO05D009501 4.4e-33 144.8 122 56.6
ECA247G2439 Erigeron canadensis HOM05D007441 ORTHO05D009501 9.7e-33 143.7 119 57.1
Hund02733 Selenicereus undatus HOM05D007441 ORTHO05D009501 1.3e-32 143.3 116 61.2
Lalb_Chr07g0182651 Lupinus albus HOM05D007441 ORTHO05D009501 2.8e-32 142.1 123 59.3
PGR044G0794 Punica granatum HOM05D007441 ORTHO05D009501 2.8e-32 142.1 121 59.5
Ca_21905_v3 Cicer arietinum L. HOM05D007441 ORTHO05D009501 3.7e-32 141.7 113 61.1
Ca_21923_v3 Cicer arietinum L. HOM05D007441 ORTHO05D009501 3.7e-32 141.7 113 61.1
Potri.015G073900 Populus trichocarpa HOM05D007441 ORTHO05D009501 3.7e-32 141.7 118 58.5
QL10p013655 Quercus lobata HOM05D007441 ORTHO05D009501 3.7e-32 141.7 113 59.3
Ciclev10022460m.g Citrus clementina HOM05D007441 ORTHO05D009501 4.8e-32 141.4 118 56.8
Psat4g057000 Pisum sativum HOM05D007441 ORTHO05D009501 6.3e-32 141.0 113 60.2
Medtr4g106640 Medicago truncatula HOM05D007441 ORTHO05D009501 8.2e-32 140.6 113 60.2
Dinv20676 Davidia involucrata HOM05D007441 ORTHO05D009501 1.4e-31 139.8 121 55.4
Manes.06G102900 Manihot esculenta HOM05D007441 ORTHO05D009501 2.4e-31 139.0 112 60.7
HanXRQChr02g0037211 Helianthus annuus HOM05D007441 ORTHO05D009501 7.0e-31 137.5 117 57.3
AUR62029952 Chenopodium quinoa HOM05D007441 ORTHO05D009501 3.5e-30 135.2 122 55.7
SGA_v2.0_scaffold90G27976 Striga asiatica HOM05D007441 ORTHO05D009501 1.3e-29 133.3 112 59.8
Rhsim12G0163200 Rhododendron simsii HOM05D007441 ORTHO05D009501 2.2e-29 132.5 108 56.5
Cpa.g.sc124.33 Carica papaya HOM05D007441 ORTHO05D009501 2.9e-29 132.1 116 55.2
TWI15G0162 Tripterygium wilfordii HOM05D007441 ORTHO05D009501 2.9e-29 132.1 120 57.5
Atru.chr9.2436 Acer truncatum HOM05D007441 ORTHO05D009501 3.8e-29 131.7 118 55.1
PGSC0003DMG400024487 Solanum tuberosum HOM05D007441 ORTHO05D009501 3.8e-29 131.7 114 59.6
CAN.G781.35 Capsicum annuum HOM05D007441 ORTHO05D009501 6.5e-29 131.0 124 54.8
CANSAT80G2614 Cannabis sativa HOM05D007441 ORTHO05D009501 8.5e-29 130.6 117 57.3
Nitab4.5_0006831g0010 Nicotiana tabacum HOM05D007441 ORTHO05D009501 8.5e-29 130.6 114 58.8
Solyc03g114120.3 Solanum lycopersicum HOM05D007441 ORTHO05D009501 1.1e-28 130.2 114 58.8
Sopen03g033180 Solanum pennellii HOM05D007441 ORTHO05D009501 1.1e-28 130.2 114 58.8
TAR622G1175 Trochodendron aralioides HOM05D007441 ORTHO05D009501 7.2e-28 127.5 119 54.6
Aqoxy3G03040 Aquilegia oxysepala HOM05D007441 ORTHO05D009501 9.4e-28 127.1 112 58.0
Peaxi162Scf00017g00269 Petunia axillaris HOM05D007441 ORTHO05D009501 1.2e-27 126.7 114 55.3
TPR.G37479 Trifolium pratense HOM05D007441 ORTHO05D009501 1.6e-27 126.3 113 55.8
SalBow5G3166 Salvia bowleyana HOM05D007441 ORTHO05D009501 4.7e-27 124.8 110 56.4
MSTRG.23109 Avicennia marina HOM05D007441 ORTHO05D009501 1.8e-26 122.9 116 50.9
Nitab4.5_0010542g0040 Nicotiana tabacum HOM05D007441 ORTHO05D001268 3.0e-26 122.1 107 58.9
MBI15_g31106_MAGBIO Magnolia biondii HOM05D007441 ORTHO05D009501 6.7e-26 120.9 116 52.6
Nn4g22840 Nelumbo nucifera HOM05D007441 ORTHO05D009501 8.8e-26 120.6 112 50.9
PSO832G4588 Papaver somniferum HOM05D007441 ORTHO05D009501 4.4e-25 118.2 112 51.8
CAN.G4872.1 Capsicum annuum HOM05D007441 ORTHO05D009501 5.7e-25 117.9 98 63.3
Actinidia34944 Actinidia chinensis HOM05D007441 ORTHO05D009501 1.3e-24 116.7 88 59.1
Haze_07488 Corylus avellana HOM05D007441 ORTHO05D009501 5.3e-23 111.3 117 51.3
ATR1149G031 Amborella trichopoda HOM05D007441 ORTHO05D009501 1.7e-21 106.3 113 49.6
COL.COLO4_16923 Corchorus olitorius HOM05D007441 ORTHO05D009501 1.6e-19 99.8 99 50.5
AUR62039786 Chenopodium quinoa HOM05D007441 ORTHO05D009501 6.8e-18 94.4 107 48.6
CAN.G781.34 Capsicum annuum HOM05D007441 ORTHO05D009501 2.4e-15 85.9 75 56.0
Zm00001eb210540 Zea mays HOM05D007441 ORTHO05D009501 5.4e-15 84.7 112 37.5
AUR62040474 Chenopodium quinoa HOM05D007441 ORTHO05D009501 1.2e-14 83.6 112 44.6
Migut.I00040 Erythranthe guttata HOM05D007441 ORTHO05D009501 1.5e-12 76.6 68 48.5
Dinv09163 Davidia involucrata HOM05D007441 ORTHO05D009501 7.2e-12 74.3 60 58.3
SEGI_24388 Sequoiadendron giganteum HOM05D007441 ORTHO05D009501 1.7e-08 63.2 100 38.0
Medtr4g079220 Medicago truncatula HOM05D007441 ORTHO05D009501 1.2e-06 57.0 40 70.0


User provided reference genes

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