Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 6.4e-301 1036.6 502 100.0
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 2.1e-280 968.4 522 92.9
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 1.5e-254 882.5 522 84.7
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 1.5e-254 882.5 522 84.7
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 7.2e-252 873.6 522 84.3
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 1.7e-248 862.4 522 83.0
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 4.4e-233 811.2 520 77.7
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 4.4e-225 784.6 525 74.9
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 6.1e-219 764.2 525 73.0
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 4.0e-218 761.5 526 73.8
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 4.3e-204 714.9 528 68.0
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 5.1e-181 638.3 521 63.9
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 5.8e-177 624.8 498 62.7
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 4.8e-155 552.0 515 56.3
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 1.8e-149 533.5 484 57.9
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 4.3e-148 528.9 352 75.6
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 5.7e-148 528.5 521 52.4
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 6.9e-146 521.5 536 49.6
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 6.9e-146 521.5 485 56.5
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 1.2e-145 520.8 517 54.4
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 4.5e-145 518.8 459 56.4
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 5.9e-145 518.5 465 59.1
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 3.8e-144 515.8 517 51.8
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 1.1e-143 514.2 464 55.2
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 1.1e-143 514.2 459 56.0
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 3.2e-143 512.7 528 52.1
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 2.1e-142 510.0 512 51.8
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 2.7e-142 509.6 533 51.4
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 6.1e-142 508.4 509 51.9
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.8e-141 506.9 534 50.0
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 3.0e-141 506.1 519 49.7
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 5.1e-141 505.4 522 51.0
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.1e-140 504.2 476 54.4
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 1.1e-140 504.2 476 55.0
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 1.5e-140 503.8 464 55.8
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 2.6e-140 503.1 459 55.1
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 4.4e-140 502.3 459 56.0
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 9.7e-140 501.1 464 56.2
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 1.7e-139 500.4 520 51.0
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.1e-138 497.7 524 50.0
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 1.4e-138 497.3 517 50.9
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.8e-138 496.9 463 55.1
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 3.1e-138 496.1 516 50.0
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 4.1e-138 495.7 464 56.2
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 5.3e-138 495.4 511 49.9
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 7.0e-138 495.0 521 49.7
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 2.0e-137 493.4 473 55.6
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 2.0e-137 493.4 467 54.6
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 2.6e-137 493.0 460 55.2
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 2.6e-137 493.0 493 52.5
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 2.6e-137 493.0 463 54.2
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 5.9e-137 491.9 517 50.7
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 1.3e-136 490.7 516 49.8
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 1.1e-135 487.6 465 53.1
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 1.1e-135 487.6 463 54.4
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 3.2e-135 486.1 462 56.3
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 4.2e-135 485.7 464 53.4
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 7.2e-135 485.0 523 50.1
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 2.1e-134 483.4 462 53.9
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 1.5e-132 477.2 521 49.7
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 2.6e-132 476.5 466 52.1
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 3.3e-132 476.1 517 49.7
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 7.4e-132 474.9 597 45.2
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 1.3e-131 474.2 521 48.4
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 4.8e-131 472.2 459 53.2
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 4.8e-131 472.2 526 47.0
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 1.1e-130 471.1 461 51.8
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 4.1e-130 469.2 463 52.7
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 7.0e-130 468.4 462 52.8
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 9.1e-130 468.0 497 50.1
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 1.6e-129 467.2 467 51.8
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 2.6e-129 466.5 520 46.7
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 3.5e-129 466.1 494 48.8
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 1.0e-128 464.5 466 51.7
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.7e-128 463.8 462 52.6
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.5e-127 460.7 573 45.0
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.9e-127 460.3 460 52.8
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 1.9e-127 460.3 469 52.0
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 5.5e-127 458.8 486 50.8
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 5.5e-127 458.8 486 50.8
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 3.6e-126 456.1 495 49.7
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 5.7e-124 448.7 510 47.5
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.8e-123 446.4 458 51.7
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 5.3e-122 442.2 426 53.1
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.7e-121 439.9 513 48.9
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.3e-120 437.6 514 44.9
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 5.0e-120 435.6 462 49.4
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 9.4e-119 431.4 622 41.6
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 3.6e-118 429.5 460 49.6
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 8.0e-118 428.3 514 45.5
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 1.2e-116 424.5 487 44.8
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 1.1e-111 407.9 462 47.0
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 8.0e-110 401.7 268 77.2
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 1.4e-106 391.0 499 42.7
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 1.3e-104 384.4 377 53.6
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 1.4e-90 337.8 323 52.9
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 3.2e-90 336.7 350 49.4
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 7.5e-84 315.5 297 53.2
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.4e-82 311.2 289 54.0
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 2.8e-78 297.0 486 36.6
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 4.4e-76 289.7 509 35.4
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 4.2e-74 283.1 470 34.9
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 1.3e-72 278.1 270 53.0
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 3.3e-71 273.5 270 52.6
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 1.1e-69 268.5 472 36.7
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 1.4e-66 258.1 258 52.3
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 7.8e-65 252.3 219 58.0
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 8.1e-62 242.3 283 46.6
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 1.6e-46 191.4 136 69.1
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 3.7e-46 190.3 203 48.3
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 2.0e-44 184.5 335 35.8
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.4e-32 145.2 85 76.5
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 1.8e-29 134.8 95 65.3
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 1.1e-23 115.5 82 59.8
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 1.1e-21 109.0 98 59.2
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 2.6e-20 104.4 114 50.0
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 1.9e-18 98.2 111 47.7
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 1.6e-17 95.1 92 48.9
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 1.5e-15 88.6 75 58.7
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.0e-11 75.9 95 43.2
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 3.6e-09 67.4 52 65.4
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.8e-08 65.1 52 65.4
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 3.0e-08 64.3 71 43.7
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 7.5e-07 59.7 52 59.6
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 7.5e-07 59.7 52 59.6
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.3e-06 58.9 52 63.5


User provided reference genes

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