Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26464 Brassica carinata HOM05D009238 ORTHO05D024301 3.6e-146 521.5 263 100.0
BolC5t31241H Brassica oleracea HOM05D009238 ORTHO05D024301 1.5e-62 243.8 118 99.2
C05p25060 Brassica napus HOM05D000072 ORTHO05D000026 1.1e-46 191.0 96 95.8
BraA09t39428Z Brassica rapa HOM05D000072 ORTHO05D000026 7.8e-40 168.3 96 82.3
C05p25080 Brassica napus HOM05D000072 ORTHO05D000026 1.1e-38 164.5 96 81.2
A09p39260 Brassica napus HOM05D000260 ORTHO05D000318 6.2e-37 158.7 107 72.0
Sp1g22830 Schrenkiella parvula HOM05D000260 ORTHO05D000318 5.2e-36 155.6 98 78.6
C05p25120 Brassica napus HOM05D000260 ORTHO05D000318 5.8e-35 152.1 96 75.0
BcaC05g26468 Brassica carinata HOM05D000260 ORTHO05D000318 2.2e-34 150.2 96 74.0
BolC5t31244H Brassica oleracea HOM05D000260 ORTHO05D000318 2.2e-34 150.2 96 74.0
BcaB03g14039 Brassica carinata HOM05D000260 ORTHO05D000318 5.4e-33 145.6 97 75.3
A07p12570 Brassica napus HOM05D000260 ORTHO05D000318 1.3e-31 141.0 97 73.2
BraA07t29035Z Brassica rapa HOM05D000260 ORTHO05D000318 1.3e-31 141.0 97 73.2
BraA09t39426Z Brassica rapa HOM05D000260 ORTHO05D000318 3.6e-29 132.9 97 69.1
BcaC06g35216 Brassica carinata HOM05D000260 ORTHO05D000318 1.1e-28 131.3 96 67.7
C07p18570 Brassica napus HOM05D000260 ORTHO05D000318 1.1e-28 131.3 96 67.7
BolC7t42368H Brassica oleracea HOM05D000260 ORTHO05D000318 1.1e-28 131.3 96 67.7
AL1G39930 Arabidopsis lyrata HOM05D000260 ORTHO05D000318 1.4e-28 131.0 96 68.8
Thhalv10007057m.g Eutrema salsugineum HOM05D000260 ORTHO05D000318 5.2e-28 129.0 96 64.6
Carub.0001s2511 Capsella rubella HOM05D000031 ORTHO05D000030 9.9e-27 124.8 95 66.3
AT1G25390 Arabidopsis thaliana HOM05D000260 ORTHO05D000318 6.4e-26 122.1 96 65.6
CARHR026090 Cardamine hirsuta HOM05D000260 ORTHO05D000318 8.4e-26 121.7 96 64.6
Carub.0001s2512 Capsella rubella HOM05D000260 ORTHO05D000318 4.2e-25 119.4 96 64.6
Aa31LG7G9100 Aethionema arabicum HOM05D000260 ORTHO05D000318 1.3e-21 107.8 96 56.2
BcaC05g26467 Brassica carinata HOM05D000260 ORTHO05D024301 6.4e-18 95.5 60 71.7
BraA09t39427Z Brassica rapa HOM05D009238 ORTHO05D024301 3.2e-17 93.2 51 84.3
BraA09t39429Z Brassica rapa HOM05D009238 ORTHO05D024301 3.0e-15 86.7 55 74.5
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 8.1e-13 78.6 145 35.9
BraA07t28639Z Brassica rapa HOM05D009238 ORTHO05D012489 6.9e-12 75.5 100 46.0
BcaC01g06924 Brassica carinata HOM05D000496 ORTHO05D000411 3.4e-11 73.2 145 35.2
BcaC09g49165 Brassica carinata HOM05D000032 ORTHO05D000925 2.4e-09 67.0 131 37.4
BcaC03g16856 Brassica carinata HOM05D009238 ORTHO05D019868 2.1e-08 63.9 138 36.2
FAN12G1998 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.1e-08 63.9 119 32.8
Potri.010G121025 Populus trichocarpa HOM05D008908 ORTHO05D010362 2.7e-08 63.5 97 41.2
BcaC07g39368 Brassica carinata HOM05D009238 ORTHO05D012489 3.5e-08 63.2 132 33.3
BraA04t16367Z Brassica rapa HOM05D009238 ORTHO05D012489 7.9e-08 62.0 147 33.3
Dinv31610 Davidia involucrata HOM05D000260 ORTHO05D010362 7.9e-08 62.0 96 43.8
Manes.14G105800 Manihot esculenta HOM05D000260 ORTHO05D000318 1.0e-07 61.6 94 41.5
Potri.010G121350 Populus trichocarpa HOM05D000072 ORTHO05D000026 1.0e-07 61.6 97 39.2
C02p30800 Brassica napus HOM05D009238 ORTHO05D012489 1.3e-07 61.2 94 37.2
A04p06620 Brassica napus HOM05D009238 ORTHO05D012489 3.9e-07 59.7 147 32.7
BraA03t12194Z Brassica rapa HOM05D009238 ORTHO05D012489 5.1e-07 59.3 113 35.4
C02p47500 Brassica napus HOM05D009238 ORTHO05D019868 1.5e-06 57.8 109 39.4
BcaC07g36896 Brassica carinata HOM05D004566 ORTHO05D000925 1.9e-06 57.4 100 39.0
BcaC09g51059 Brassica carinata HOM05D000022 ORTHO05D000071 2.5e-06 57.0 164 32.3
PGSC0003DMG402030532 Solanum tuberosum HOM05D000260 ORTHO05D000318 2.5e-06 57.0 91 35.2
CANSAT01G0046 Cannabis sativa HOM05D000260 ORTHO05D000318 4.3e-06 56.2 61 44.3
BcaB04g17452 Brassica carinata HOM05D009238 ORTHO05D019868 7.4e-06 55.5 133 33.1
C06p11850 Brassica napus HOM05D009238 ORTHO05D012489 7.4e-06 55.5 145 29.7
FvH4_4g26892 Fragaria vesca HOM05D000072 ORTHO05D000026 7.4e-06 55.5 57 40.4
BraA03t13842Z Brassica rapa HOM05D009238 ORTHO05D020093 9.6e-06 55.1 84 44.0


User provided reference genes

Program Settings