Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26446 Brassica carinata HOM05D001825 ORTHO05D010533 1.3e-115 420.2 293 100.0
BcaC06g35196 Brassica carinata HOM05D001825 ORTHO05D002336 1.9e-74 283.5 352 49.7
BolC7t42385H Brassica oleracea HOM05D001825 ORTHO05D002336 2.8e-70 269.6 346 49.4
AUR62044459 Chenopodium quinoa HOM05D001825 ORTHO05D010533 1.5e-63 247.3 290 72.1
AUR62043748 Chenopodium quinoa HOM05D001825 ORTHO05D010533 1.8e-61 240.4 297 49.2
BraA08t34646Z Brassica rapa HOM05D001825 ORTHO05D002336 1.9e-55 220.3 381 58.8
A07p12640 Brassica napus HOM05D001825 ORTHO05D002336 1.2e-52 211.1 399 53.6
BraA07t29042Z Brassica rapa HOM05D001825 ORTHO05D002336 1.2e-52 211.1 399 53.6
A08p27000 Brassica napus HOM05D001825 ORTHO05D002336 1.2e-44 184.5 376 54.3
BolC7t44001H Brassica oleracea HOM05D001825 ORTHO05D002336 2.2e-43 180.3 375 54.1
C07p34700 Brassica napus HOM05D001825 ORTHO05D002336 1.6e-41 174.1 391 50.6
A09p39520 Brassica napus HOM05D001825 ORTHO05D004551 3.7e-38 162.9 83 95.2
A06p42500 Brassica napus HOM05D001825 ORTHO05D002336 5.3e-37 159.1 387 50.1
BraA06t27163Z Brassica rapa HOM05D001825 ORTHO05D002336 1.3e-35 154.5 379 50.4
C07p18770 Brassica napus HOM05D001825 ORTHO05D002336 6.5e-35 152.1 83 86.7
C03p72890 Brassica napus HOM05D001825 ORTHO05D010533 9.3e-34 148.3 82 91.5
BraA09t39448Z Brassica rapa HOM05D001825 ORTHO05D002336 9.3e-34 148.3 73 97.3
BcaC01g01699 Brassica carinata HOM05D001825 ORTHO05D002336 8.7e-32 141.7 82 87.8
BcaC04g21416 Brassica carinata HOM05D001825 ORTHO05D002336 8.7e-32 141.7 77 88.3
C09p32040 Brassica napus HOM05D001825 ORTHO05D010533 8.7e-32 141.7 77 88.3
BolC3t19588H Brassica oleracea HOM05D001825 ORTHO05D002336 8.7e-32 141.7 82 87.8
BolC7t44006H Brassica oleracea HOM05D001825 ORTHO05D010533 2.5e-31 140.2 405 46.7
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 4.3e-31 139.4 136 57.4
Lj6C763G9 Lonicera japonica HOM05D001825 ORTHO05D002336 4.3e-31 139.4 235 55.7
Gorai.013G081300 Gossypium raimondii HOM05D001825 ORTHO05D002336 9.6e-31 138.3 79 87.3
C07p34740 Brassica napus HOM05D001825 ORTHO05D002336 2.1e-30 137.1 73 89.0
C07p34760 Brassica napus HOM05D001825 ORTHO05D002336 2.1e-30 137.1 73 89.0
BcaC04g19385 Brassica carinata HOM05D001825 ORTHO05D010533 1.2e-28 131.3 82 85.4
C09p56270 Brassica napus HOM05D001825 ORTHO05D010533 1.2e-28 131.3 82 85.4
BolC9t58496H Brassica oleracea HOM05D001825 ORTHO05D010533 1.2e-28 131.3 82 85.4
PGR119G2353 Punica granatum HOM05D001825 ORTHO05D002336 2.0e-28 130.6 126 56.3
arahy.Tifrunner.gnm1.ann1.I3PUBY Arachis hypogaea HOM05D001825 ORTHO05D002336 3.8e-27 126.3 95 69.5
A01p23900 Brassica napus HOM05D001825 ORTHO05D010533 3.8e-27 126.3 138 54.3
A07p43620 Brassica napus HOM05D001825 ORTHO05D010533 3.8e-27 126.3 138 54.3
BraA03t12003Z Brassica rapa HOM05D001825 ORTHO05D010533 3.8e-27 126.3 138 54.3
Lalb_Chr10g0099901 Lupinus albus HOM05D001825 ORTHO05D010533 1.4e-26 124.4 187 71.7
BcaB03g12019 Brassica carinata HOM05D001825 ORTHO05D002336 5.5e-26 122.5 67 92.5
BraA03t15615Z Brassica rapa HOM05D001825 ORTHO05D010533 7.1e-26 122.1 124 56.5
Ah.02g115330 Amaranthus hybridus HOM05D001825 ORTHO05D002336 3.5e-25 119.8 137 48.2
BolC9t56056H Brassica oleracea HOM05D001825 ORTHO05D010533 4.6e-25 119.4 392 46.2
CARHR025970 Cardamine hirsuta HOM05D001825 ORTHO05D002336 7.9e-25 118.6 66 89.4
SEGI_15353 Sequoiadendron giganteum HOM05D001825 ORTHO05D010533 2.3e-24 117.1 73 78.1
Aa31LG7G9010 Aethionema arabicum HOM05D001825 ORTHO05D002336 4.3e-23 112.8 66 84.8
ClCG05G022880 Citrullus lanatus HOM05D001825 ORTHO05D002336 7.4e-23 112.1 145 46.2
Haze_18656 Corylus avellana HOM05D001825 ORTHO05D002336 4.1e-21 106.3 396 28.3
C03p09460 Brassica napus HOM05D009118 ORTHO05D010533 6.9e-21 105.5 63 87.3
CAN.G438.129 Capsicum annuum HOM05D001825 ORTHO05D002336 6.9e-21 105.5 186 37.6
BcaC06g33955 Brassica carinata HOM05D001825 ORTHO05D010533 2.6e-20 103.6 120 50.0
vmacro10543 Vaccinium macrocarpon HOM05D001825 ORTHO05D002336 2.6e-20 103.6 277 47.3
Oeu010777.1 Olea europaea HOM05D001825 ORTHO05D002336 3.4e-20 103.2 96 59.4
ECA234G2809 Erigeron canadensis HOM05D001825 ORTHO05D010533 1.0e-19 101.7 152 40.8
A03p65620 Brassica napus HOM05D001825 ORTHO05D010533 1.7e-19 100.9 124 50.0
Ciclev10019417m.g Citrus clementina HOM05D001825 ORTHO05D002336 1.7e-19 100.9 57 87.7
BraA09t38092Z Brassica rapa HOM05D001825 ORTHO05D010533 3.8e-19 99.8 147 44.9
A09p25040 Brassica napus HOM05D001825 ORTHO05D010533 6.5e-19 99.0 147 44.9
Psat2g126080 Pisum sativum HOM05D001085 ORTHO05D010533 8.5e-19 98.6 146 41.8
RcHm_v2.0_Chr7g0238001 Rosa chinensis HOM05D001825 ORTHO05D010533 5.5e-18 95.9 93 55.9
CBR_g26350 Chara braunii HOM05D001825 ORTHO05D002336 9.4e-18 95.1 62 74.2
Duzib068G0381 Durio zibethinus HOM05D001825 ORTHO05D002336 1.2e-17 94.7 54 85.2
Lalb_Chr17g0342011 Lupinus albus HOM05D001825 ORTHO05D002336 1.2e-17 94.7 67 67.2
AUR62001116 Chenopodium quinoa HOM05D001825 ORTHO05D010533 2.7e-17 93.6 267 53.2
Hund02394 Selenicereus undatus HOM05D001825 ORTHO05D002336 6.1e-17 92.4 64 71.9
HanXRQChr12g0384181 Helianthus annuus HOM05D001825 ORTHO05D010533 7.9e-17 92.0 187 38.0
arahy.Tifrunner.gnm1.ann1.9V29BW Arachis hypogaea HOM05D001825 ORTHO05D002336 1.4e-16 91.3 165 35.8
AUR62035258 Chenopodium quinoa HOM05D001825 ORTHO05D002336 3.0e-16 90.1 45 91.1
SEGI_36261 Sequoiadendron giganteum HOM05D001825 ORTHO05D010533 3.0e-16 90.1 53 79.2
Zm00001eb269610 Zea mays HOM05D001825 ORTHO05D002336 3.0e-16 90.1 65 66.2
HanXRQChr07g0188451 Helianthus annuus HOM05D000882 ORTHO05D001142 3.9e-16 89.7 53 81.1
Migut.L01084 Erythranthe guttata HOM05D001825 ORTHO05D002336 6.7e-16 89.0 50 86.0
PRCOL_00003010 Prasinoderma coloniale HOM05D001825 ORTHO05D002336 8.8e-16 88.6 127 35.4
QL10p025031 Quercus lobata HOM05D001825 ORTHO05D002336 8.8e-16 88.6 45 88.9
Zm00001eb378360 Zea mays HOM05D001825 ORTHO05D002336 8.8e-16 88.6 65 64.6
Carub.0001s2499 Capsella rubella HOM05D001825 ORTHO05D002336 7.4e-15 85.5 63 69.8
Ah.11g045010 Amaranthus hybridus HOM05D001825 ORTHO05D002336 9.7e-15 85.1 81 54.3
AT1G25490 Arabidopsis thaliana HOM05D001825 ORTHO05D002336 4.8e-14 82.8 63 68.3
Cfa018613 Carpinus fangiana HOM05D001825 ORTHO05D002336 4.8e-14 82.8 81 53.1
SMO144G0049 Selaginella moellendorffii HOM05D001825 ORTHO05D002336 6.3e-14 82.4 52 71.2
Actinidia16634 Actinidia chinensis HOM05D001825 ORTHO05D010533 4.1e-13 79.7 58 69.0
Cfa019793 Carpinus fangiana HOM05D001825 ORTHO05D002336 1.5e-12 77.8 77 51.9
MD01G1132700 Malus domestica HOM05D001825 ORTHO05D010533 1.5e-12 77.8 48 70.8
BcaC03g16707 Brassica carinata HOM05D001825 ORTHO05D010533 2.0e-12 77.4 79 50.6
Nitab4.5_0003823g0090 Nicotiana tabacum HOM05D001825 ORTHO05D002336 2.6e-12 77.0 76 52.6
Nitab4.5_0004895g0070 Nicotiana tabacum HOM05D001825 ORTHO05D002336 2.6e-12 77.0 76 52.6
Peaxi162Scf00382g00122 Petunia axillaris HOM05D001825 ORTHO05D002336 2.6e-12 77.0 76 52.6
AL1G39810 Arabidopsis lyrata HOM05D001825 ORTHO05D002336 3.4e-12 76.6 43 88.4
SalBow8G3841 Salvia bowleyana HOM05D001825 ORTHO05D002336 4.5e-12 76.3 75 52.0
Haze_26341 Corylus avellana HOM05D001825 ORTHO05D002336 5.9e-12 75.9 83 48.2
unitig_26.g10265 Utricularia gibba HOM05D001825 ORTHO05D002336 7.7e-12 75.5 75 52.0
RcHm_v2.0_Chr5g0039511 Rosa chinensis HOM05D001825 ORTHO05D010533 1.3e-11 74.7 78 50.0
SalBow8G4326 Salvia bowleyana HOM05D001825 ORTHO05D002336 1.7e-11 74.3 77 54.5
BcaB03g14047 Brassica carinata HOM05D001825 ORTHO05D002336 8.5e-11 72.0 37 97.3
Lj3C1018T2 Lonicera japonica HOM05D001825 ORTHO05D002336 8.5e-11 72.0 41 85.4
Actinidia14868 Actinidia chinensis HOM05D001825 ORTHO05D010533 1.1e-10 71.6 43 79.1
Nitab4.5_0011561g0040 Nicotiana tabacum HOM05D001825 ORTHO05D002336 1.9e-10 70.9 75 48.0
Peaxi162Scf00013g00935 Petunia axillaris HOM05D001825 ORTHO05D002336 1.9e-10 70.9 75 48.0
PGSC0003DMG400017088 Solanum tuberosum HOM05D001825 ORTHO05D010533 1.9e-10 70.9 42 85.7
PGSC0003DMG403015876 Solanum tuberosum HOM05D001825 ORTHO05D010533 3.2e-10 70.1 36 88.9
Haze_17456 Corylus avellana HOM05D001825 ORTHO05D002336 5.5e-10 69.3 63 58.7
Glyma.10G070400 Glycine max HOM05D001825 ORTHO05D010533 5.5e-10 69.3 36 88.9
VMungo1389G0002 Vigna mungo HOM05D001825 ORTHO05D002336 7.2e-10 68.9 42 78.6
Dinv01484 Davidia involucrata HOM05D001825 ORTHO05D002336 1.6e-09 67.8 42 81.0
SGA_v2.0_scaffold36G14534 Striga asiatica HOM05D001825 ORTHO05D002336 1.6e-09 67.8 97 37.1
Manes.14G099600 Manihot esculenta HOM05D001825 ORTHO05D002336 2.7e-09 67.0 134 34.3
SalBow8G2594 Salvia bowleyana HOM05D001825 ORTHO05D002336 3.6e-09 66.6 129 35.7
Nitab4.5_0002869g0050 Nicotiana tabacum HOM05D001825 ORTHO05D010533 6.1e-09 65.9 79 45.6
Nitab4.5_0010801g0030 Nicotiana tabacum HOM05D001825 ORTHO05D002336 6.1e-09 65.9 70 47.1
SalBow1G3956 Salvia bowleyana HOM05D001825 ORTHO05D002336 6.1e-09 65.9 73 43.8
FAN28G1117 Fragaria x ananassa HOM05D001825 ORTHO05D002336 1.4e-08 64.7 61 59.0
CSS0031890 Camellia sinensis var. sinensis HOM05D001825 ORTHO05D010533 1.8e-08 64.3 40 77.5
Gohir.D08G106500 Gossypium hirsutum HOM05D001825 ORTHO05D002336 2.3e-08 63.9 35 88.6
BcaB03g12018 Brassica carinata HOM05D001825 ORTHO05D010533 3.9e-08 63.2 36 86.1
Lalb_Chr10g0099911 Lupinus albus HOM05D001825 ORTHO05D002336 1.1e-07 61.6 37 78.4
Ciclev10022447m.g Citrus clementina HOM05D001825 ORTHO05D002336 1.5e-07 61.2 35 85.7
Lsat_1_v5_gn_4_55740 Lactuca sativa HOM05D001825 ORTHO05D010533 2.0e-07 60.8 94 39.4
Duzib205G0830 Durio zibethinus HOM05D001825 ORTHO05D002336 2.6e-07 60.5 66 45.5
MD10G1108800 Malus domestica HOM05D001825 ORTHO05D010533 7.4e-07 58.9 36 75.0
RcHm_v2.0_Chr4g0401841 Rosa chinensis HOM05D001825 ORTHO05D010533 1.3e-06 58.2 28 82.1
Cfa026019 Carpinus fangiana HOM05D001825 ORTHO05D002336 1.7e-06 57.8 76 42.1
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 2.2e-06 57.4 48 62.5
RcHm_v2.0_Chr1g0316561 Rosa chinensis HOM05D001825 ORTHO05D010533 2.2e-06 57.4 27 85.2
RcHm_v2.0_Chr1g0328271 Rosa chinensis HOM05D001825 ORTHO05D010533 2.2e-06 57.4 27 85.2
RcHm_v2.0_Chr4g0434251 Rosa chinensis HOM05D001825 ORTHO05D010533 2.2e-06 57.4 27 85.2
Cpa.g.sc13.7 Carica papaya HOM05D001825 ORTHO05D002336 4.8e-06 56.2 38 68.4
Actinidia39822 Actinidia chinensis HOM05D001825 ORTHO05D002336 6.3e-06 55.8 31 83.9


User provided reference genes

Program Settings