Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26436 Brassica carinata HOM05D000709 ORTHO05D021077 1.9e-49 198.7 93 100.0
BolC5t31215H Brassica oleracea HOM05D000709 ORTHO05D002401 1.2e-40 169.5 79 100.0
A09p39660 Brassica napus HOM05D000709 ORTHO05D002401 8.0e-40 166.8 79 97.5
BraA09t39462Z Brassica rapa HOM05D000709 ORTHO05D002401 8.0e-40 166.8 79 97.5
C05p24860 Brassica napus HOM05D000709 ORTHO05D002401 6.8e-39 163.7 79 96.2
BcaC05g26650 Brassica carinata HOM05D000709 ORTHO05D002401 1.7e-37 159.1 79 93.7
Sp1g22630 Schrenkiella parvula HOM05D000709 ORTHO05D002401 1.9e-33 145.6 79 89.9
CARHR025860 Cardamine hirsuta HOM05D000709 ORTHO05D002401 3.3e-33 144.8 79 84.8
Thhalv10007551m.g Eutrema salsugineum HOM05D000709 ORTHO05D002401 2.1e-32 142.1 79 86.1
BcaB03g14052 Brassica carinata HOM05D000709 ORTHO05D002401 1.8e-31 139.0 81 82.7
Carub.0001s2490 Capsella rubella HOM05D000709 ORTHO05D002401 6.8e-31 137.1 79 82.3
BcaC06g35188 Brassica carinata HOM05D000709 ORTHO05D002401 4.4e-30 134.4 68 89.7
C07p18870 Brassica napus HOM05D000709 ORTHO05D002401 4.4e-30 134.4 68 89.7
BolC7t42397H Brassica oleracea HOM05D000709 ORTHO05D002401 4.4e-30 134.4 68 89.7
AL1G39720 Arabidopsis lyrata HOM05D000709 ORTHO05D002401 9.8e-30 133.3 79 81.0
AT1G25580 Arabidopsis thaliana HOM05D000709 ORTHO05D002401 6.4e-29 130.6 79 78.5
BraA07t29046Z Brassica rapa HOM05D001835 ORTHO05D001899 1.3e-26 122.9 77 79.2
Aa31LG7G8920 Aethionema arabicum HOM05D005369 ORTHO05D006955 3.6e-24 114.8 78 70.5
THA.LOC104821963 Tarenaya hassleriana HOM05D000709 ORTHO05D002401 1.7e-21 105.9 77 68.8
Manes.14G097400 Manihot esculenta HOM05D000709 ORTHO05D002401 2.9e-21 105.1 69 71.0
CsaV3_5G033980 Cucumis sativus L. HOM05D000709 ORTHO05D002401 6.4e-21 104.0 76 69.7
Cpa.g.sc53.116 Carica papaya HOM05D000709 ORTHO05D002401 1.4e-20 102.8 76 65.8
THA.LOC104801756 Tarenaya hassleriana HOM05D000709 ORTHO05D002401 2.4e-20 102.1 67 73.1
MELO3C012215.2 Cucumis melo HOM05D000709 ORTHO05D002401 3.2e-20 101.7 72 69.4
ClCG05G023020 Citrullus lanatus HOM05D000709 ORTHO05D002401 4.1e-20 101.3 72 68.1
Manes.06G072300 Manihot esculenta HOM05D000709 ORTHO05D002401 1.2e-19 99.8 68 69.1
Haze_17441 Corylus avellana HOM05D000709 ORTHO05D002401 2.1e-19 99.0 79 62.0
Sed0013338 Sechium edule HOM05D000709 ORTHO05D002401 2.7e-19 98.6 78 66.7
BcaC06g31650 Brassica carinata HOM05D000709 ORTHO05D021077 3.5e-19 98.2 53 86.8
Dinv21134 Davidia involucrata HOM05D000709 ORTHO05D002401 3.5e-19 98.2 74 60.8
Rhsim12G0081600 Rhododendron simsii HOM05D000709 ORTHO05D002401 6.0e-19 97.4 75 64.0
Atru.chr11.1354 Acer truncatum HOM05D000709 ORTHO05D002401 7.8e-19 97.1 76 63.2
AUR62035283 Chenopodium quinoa HOM05D000709 ORTHO05D002401 7.8e-19 97.1 76 63.2
GSVIVG01011954001 Vitis vinifera HOM05D000709 ORTHO05D002401 7.8e-19 97.1 73 61.6
Actinidia13674 Actinidia chinensis HOM05D000709 ORTHO05D002401 1.0e-18 96.7 69 65.2
Actinidia16618 Actinidia chinensis HOM05D000709 ORTHO05D002401 1.0e-18 96.7 66 68.2
Nitab4.5_0004122g0040 Nicotiana tabacum HOM05D000709 ORTHO05D002401 1.0e-18 96.7 76 59.2
Thecc.02G361300 Theobroma cacao HOM05D000709 ORTHO05D002401 1.0e-18 96.7 74 60.8
CSS0012182 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D002401 1.7e-18 95.9 72 66.7
CSS0041233 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D002401 1.7e-18 95.9 72 66.7
AUR62002922 Chenopodium quinoa HOM05D000709 ORTHO05D002401 1.7e-18 95.9 76 63.2
CSS0016712 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D002401 2.3e-18 95.5 73 67.1
CSS0037976 Camellia sinensis var. sinensis HOM05D000709 ORTHO05D002401 2.3e-18 95.5 73 67.1
Dinv16506 Davidia involucrata HOM05D000709 ORTHO05D002401 3.0e-18 95.1 73 64.4
vmacro01365 Vaccinium macrocarpon HOM05D000709 ORTHO05D002401 3.9e-18 94.7 75 62.7
TWI31G0592 Tripterygium wilfordii HOM05D000709 ORTHO05D002401 6.6e-18 94.0 76 60.5
Peaxi162Scf00380g00219 Petunia axillaris HOM05D000709 ORTHO05D002401 8.6e-18 93.6 76 57.9
Hma1.2p1_0406F.1_g146040 Hydrangea macrophylla HOM05D000709 ORTHO05D002401 1.1e-17 93.2 75 65.3
Lsat_1_v5_gn_3_57981 Lactuca sativa HOM05D000709 ORTHO05D002401 1.1e-17 93.2 58 69.0
Sed0020682 Sechium edule HOM05D000709 ORTHO05D002401 1.5e-17 92.8 75 64.0
CAN.G184.90 Capsicum annuum HOM05D000709 ORTHO05D002401 1.9e-17 92.4 76 57.9
Hund05768 Selenicereus undatus HOM05D000709 ORTHO05D002401 1.9e-17 92.4 76 59.2
HanXRQChr17g0552261 Helianthus annuus HOM05D000709 ORTHO05D002401 2.5e-17 92.0 62 67.7
ECA246G2234 Erigeron canadensis HOM05D000709 ORTHO05D002401 3.3e-17 91.7 61 68.9
MSTRG.7689 Avicennia marina HOM05D000709 ORTHO05D002401 7.3e-17 90.5 73 60.3
EL10Ac6g14495 Beta vulgaris HOM05D000709 ORTHO05D002401 7.3e-17 90.5 62 67.7
MBI12_g21978_MAGBIO Magnolia biondii HOM05D000709 ORTHO05D002401 7.3e-17 90.5 76 59.2
TAR629G1111 Trochodendron aralioides HOM05D000709 ORTHO05D002401 7.3e-17 90.5 78 55.1
Oeu041879.2 Olea europaea HOM05D000709 ORTHO05D002401 9.6e-17 90.1 59 69.5
vmacro10529 Vaccinium macrocarpon HOM05D000709 ORTHO05D002401 9.6e-17 90.1 76 60.5
COL.COLO4_07867 Corchorus olitorius HOM05D000709 ORTHO05D002401 1.2e-16 89.7 66 62.1
FAN17G2510 Fragaria x ananassa HOM05D000709 ORTHO05D002401 1.2e-16 89.7 58 63.8
Hund25104 Selenicereus undatus HOM05D000709 ORTHO05D002401 1.2e-16 89.7 74 55.4
Eucgr.G02349 Eucalyptus grandis HOM05D000709 ORTHO05D002401 1.6e-16 89.4 62 66.1
FAN07G0271 Fragaria x ananassa HOM05D000709 ORTHO05D002401 1.6e-16 89.4 58 63.8
MD13G1046600 Malus domestica HOM05D000709 ORTHO05D002401 1.6e-16 89.4 83 57.8
MD16G1048300 Malus domestica HOM05D000709 ORTHO05D002401 1.6e-16 89.4 73 64.4
CiPaw.15G003500 Carya illinoinensis HOM05D000709 ORTHO05D002401 2.1e-16 89.0 73 64.4
Cc11_g10610 Coffea canephora HOM05D000709 ORTHO05D002401 2.1e-16 89.0 74 58.1
QL01p045366 Quercus lobata HOM05D000709 ORTHO05D002401 2.1e-16 89.0 76 59.2
TAR371G0746 Trochodendron aralioides HOM05D000709 ORTHO05D002401 2.1e-16 89.0 73 54.8
Potri.008G116600 Populus trichocarpa HOM05D000709 ORTHO05D002401 2.8e-16 88.6 69 62.3
FvH4_4g28090 Fragaria vesca HOM05D000709 ORTHO05D002401 3.6e-16 88.2 58 63.8
FAN12G0115 Fragaria x ananassa HOM05D000709 ORTHO05D002401 3.6e-16 88.2 58 63.8
RcHm_v2.0_Chr4g0435841 Rosa chinensis HOM05D000709 ORTHO05D002401 3.6e-16 88.2 72 58.3
FAN22G1336 Fragaria x ananassa HOM05D000709 ORTHO05D002401 6.2e-16 87.4 58 62.1
unitig_22.g5565 Utricularia gibba HOM05D000709 ORTHO05D002401 6.2e-16 87.4 73 58.9
Duzib248G0470 Durio zibethinus HOM05D000709 ORTHO05D002401 1.1e-15 86.7 74 56.8
Duzib251G0863 Durio zibethinus HOM05D000709 ORTHO05D002401 1.1e-15 86.7 76 56.6
Actinidia14852 Actinidia chinensis HOM05D000709 ORTHO05D021077 1.4e-15 86.3 82 53.7
Solyc05g009840.3 Solanum lycopersicum HOM05D000709 ORTHO05D002401 1.4e-15 86.3 76 53.9
Sopen05g005650 Solanum pennellii HOM05D000709 ORTHO05D002401 1.4e-15 86.3 76 53.9
PGSC0003DMG400000809 Solanum tuberosum HOM05D000709 ORTHO05D002401 1.4e-15 86.3 74 55.4
TAR374G1466 Trochodendron aralioides HOM05D000709 ORTHO05D002401 1.8e-15 85.9 70 61.4
Lj2g0017681 Lotus japonicus HOM05D000709 ORTHO05D002401 2.4e-15 85.5 68 63.2
CANSAT64G0846 Cannabis sativa HOM05D000709 ORTHO05D002401 4.0e-15 84.7 64 60.9
Lj3A1020T58 Lonicera japonica HOM05D000709 ORTHO05D002401 4.0e-15 84.7 73 57.5
Prupe.1G305300 Prunus persica HOM05D000709 ORTHO05D002401 4.0e-15 84.7 73 63.0
Rhsim09G0112100 Rhododendron simsii HOM05D000709 ORTHO05D002401 4.0e-15 84.7 72 59.7
PGR119G0617 Punica granatum HOM05D000709 ORTHO05D002401 5.2e-15 84.3 74 52.7
Glyma.01G088200 Glycine max HOM05D000709 ORTHO05D002401 1.5e-14 82.8 61 62.3
Ciclev10031598m.g Citrus clementina HOM05D000709 ORTHO05D002401 2.0e-14 82.4 74 56.8
Gohir.D12G173700 Gossypium hirsutum HOM05D000709 ORTHO05D002401 2.6e-14 82.0 72 54.2
Gorai.008G186300 Gossypium raimondii HOM05D000709 ORTHO05D002401 2.6e-14 82.0 72 54.2
Potri.010G129700 Populus trichocarpa HOM05D000709 ORTHO05D002401 5.8e-14 80.9 64 62.5
Gohir.A12G170500 Gossypium hirsutum HOM05D000709 ORTHO05D002401 1.3e-13 79.7 69 55.1
Glyma.02G100200 Glycine max HOM05D000709 ORTHO05D002401 1.7e-13 79.3 61 59.0
Lalb_Chr10g0099731 Lupinus albus HOM05D000709 ORTHO05D002401 1.7e-13 79.3 66 60.6
Nn3g17722 Nelumbo nucifera HOM05D000709 ORTHO05D002401 1.7e-13 79.3 61 60.7
arahy.Tifrunner.gnm1.ann1.13C0EN Arachis hypogaea HOM05D000709 ORTHO05D002401 2.9e-13 78.6 56 66.1
Oeu042026.1 Olea europaea HOM05D000709 ORTHO05D002401 2.9e-13 78.6 74 54.1
Sabra10G0098700 Salix brachista HOM05D000709 ORTHO05D002401 2.9e-13 78.6 69 58.0
TAR622G0092 Trochodendron aralioides HOM05D000709 ORTHO05D002401 2.9e-13 78.6 76 53.9
Actinidia38391 Actinidia chinensis HOM05D000709 ORTHO05D002401 6.4e-13 77.4 65 60.0
Medtr5g053430 Medicago truncatula HOM05D000709 ORTHO05D002401 6.4e-13 77.4 68 57.4
Nn4g23724 Nelumbo nucifera HOM05D000709 ORTHO05D002401 8.4e-13 77.0 61 60.7
arahy.Tifrunner.gnm1.ann1.UCK419 Arachis hypogaea HOM05D000709 ORTHO05D002401 1.4e-12 76.3 56 66.1
Lalb_Chr04g0254941 Lupinus albus HOM05D000709 ORTHO05D002401 1.9e-12 75.9 66 59.1
A07p12680 Brassica napus HOM05D000709 ORTHO05D002401 3.2e-12 75.1 50 76.0
Phvul.003G027100 Phaseolus vulgaris HOM05D000709 ORTHO05D002401 5.4e-12 74.3 57 61.4
Ah.03g137940 Amaranthus hybridus HOM05D000709 ORTHO05D002401 7.1e-12 73.9 66 59.1
Nitab4.5_0011178g0010 Nicotiana tabacum HOM05D000709 ORTHO05D002401 7.1e-12 73.9 65 56.9
Glyma.20G185800 Glycine max HOM05D000709 ORTHO05D002401 1.2e-11 73.2 63 55.6
Sabra08G0088400 Salix brachista HOM05D000709 ORTHO05D002401 1.6e-11 72.8 112 38.4
VMungo1215G2333 Vigna mungo HOM05D000709 ORTHO05D002401 2.1e-11 72.4 71 50.7
Sc04g0006690 Simmondsia chinensis HOM05D000709 ORTHO05D002401 4.6e-11 71.2 57 59.6
Sc04g0006730 Simmondsia chinensis HOM05D000709 ORTHO05D002401 4.6e-11 71.2 57 59.6
Psat0s2763g0040 Pisum sativum HOM05D000709 ORTHO05D002401 1.3e-10 69.7 62 54.8
Zm00001eb280490 Zea mays HOM05D000709 ORTHO05D002401 1.1e-09 66.6 71 53.5
DCAR_023688 Daucus carota HOM05D000709 ORTHO05D002401 2.5e-09 65.5 56 58.9
arahy.Tifrunner.gnm1.ann1.919QYJ Arachis hypogaea HOM05D000709 ORTHO05D002401 3.3e-09 65.1 87 41.4
arahy.Tifrunner.gnm1.ann1.XMHS8A Arachis hypogaea HOM05D000709 ORTHO05D002401 3.3e-09 65.1 87 41.4
Glyma.10G204700 Glycine max HOM05D000709 ORTHO05D002401 7.3e-09 63.9 70 45.7
CDE11G0625 Ceratophyllum demersum HOM05D000709 ORTHO05D021077 3.6e-08 61.6 60 53.3
Medtr1g093680 Medicago truncatula HOM05D000709 ORTHO05D002401 3.6e-08 61.6 92 38.0
PSO782G4918 Papaver somniferum HOM05D000709 ORTHO05D002401 1.4e-07 59.7 66 48.5
PSO063G7345 Papaver somniferum HOM05D000709 ORTHO05D002401 1.8e-07 59.3 81 40.7
Zm00001eb280480 Zea mays HOM05D000709 ORTHO05D002401 9.0e-07 57.0 56 53.6
Zm00001eb308090 Zea mays HOM05D000709 ORTHO05D021077 9.0e-07 57.0 56 53.6
Os06g0267500 Oryza sativa ssp. japonica HOM05D000709 ORTHO05D002401 7.6e-06 53.9 75 49.3


User provided reference genes

Program Settings