Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26432 Brassica carinata HOM05D004182 ORTHO05D007321 1.5e-37 159.1 84 100.0
Nn6g32823 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.4e-21 104.4 74 79.7
BcaC04g20782 Brassica carinata HOM05D004182 ORTHO05D007321 6.8e-14 80.5 58 75.9
BolSC29t60499H Brassica oleracea HOM05D004182 ORTHO05D007321 6.8e-14 80.5 58 75.9
BolSC29t60540H Brassica oleracea HOM05D004182 ORTHO05D007321 6.8e-14 80.5 58 75.9
BolSC29t60624H Brassica oleracea HOM05D004182 ORTHO05D007321 6.8e-14 80.5 58 75.9
BolSC35t60684H Brassica oleracea HOM05D004182 ORTHO05D007321 6.8e-14 80.5 58 75.9
BolSC46t60966H Brassica oleracea HOM05D004182 ORTHO05D007321 6.8e-14 80.5 58 75.9
BolSC47t61059H Brassica oleracea HOM05D004182 ORTHO05D007321 6.8e-14 80.5 58 75.9
BolSC49t61134H Brassica oleracea HOM05D004182 ORTHO05D007321 6.8e-14 80.5 58 75.9
BraSC138t45528Z Brassica rapa HOM05D004182 ORTHO05D007321 6.8e-14 80.5 58 75.9
BraSC59t46534Z Brassica rapa HOM05D004182 ORTHO05D007321 6.8e-14 80.5 58 75.9
CARHR282390 Cardamine hirsuta HOM05D004182 ORTHO05D007321 6.8e-14 80.5 58 75.9
CARHR282490 Cardamine hirsuta HOM05D004182 ORTHO05D007321 6.8e-14 80.5 58 75.9
BraSC58t46455Z Brassica rapa HOM05D004182 ORTHO05D007321 1.3e-12 76.3 58 72.4
Nn8g40575 Nelumbo nucifera HOM05D004182 ORTHO05D007321 4.9e-12 74.3 54 74.1
BraSC179t45780Z Brassica rapa HOM05D004182 ORTHO05D007321 1.4e-11 72.8 54 74.1
Gohir.1Z049982 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.2e-10 69.7 58 67.2
Gohir.1Z051066 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.2e-10 69.7 58 67.2
Gohir.A04G039255 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.2e-10 69.7 58 67.2
VMungo0720G0997 Vigna mungo HOM05D004182 ORTHO05D007321 1.6e-10 69.3 58 67.2
VMungo0942G0003 Vigna mungo HOM05D004182 ORTHO05D007321 1.6e-10 69.3 58 67.2
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 2.7e-10 68.6 38 97.4
Sopen06g015050 Solanum pennellii HOM05D004182 ORTHO05D007321 4.6e-10 67.8 58 67.2
Sopen09g020810 Solanum pennellii HOM05D004182 ORTHO05D007321 4.6e-10 67.8 58 67.2
Nn031s41606 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.8e-10 67.0 58 67.2
Nn064s42221 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.8e-10 67.0 58 67.2
Nn349s46475 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.8e-10 67.0 58 67.2
Nn403s46571 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.8e-10 67.0 58 67.2
Nn4g25379 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.8e-10 67.0 58 67.2
Gohir.A12G165450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.0e-09 66.6 58 65.5
BraSC103t45435Z Brassica rapa HOM05D004182 ORTHO05D007321 1.7e-09 65.9 44 77.3
CARHR044290 Cardamine hirsuta HOM05D004182 ORTHO05D007321 1.7e-09 65.9 50 70.0
HPP92_028384 Vanilla planifolia HOM05D004182 ORTHO05D007321 1.7e-09 65.9 48 79.2
HPP92_028405 Vanilla planifolia HOM05D004182 ORTHO05D007321 1.7e-09 65.9 48 79.2
HPP92_028414 Vanilla planifolia HOM05D004182 ORTHO05D007321 1.7e-09 65.9 48 79.2
HPP92_028420 Vanilla planifolia HOM05D004182 ORTHO05D007321 1.7e-09 65.9 48 79.2
HPP92_028429 Vanilla planifolia HOM05D004182 ORTHO05D007321 1.7e-09 65.9 48 79.2
HPP92_028433 Vanilla planifolia HOM05D004182 ORTHO05D007321 1.7e-09 65.9 48 79.2
PGSC0003DMG400043035 Solanum tuberosum HOM05D004182 ORTHO05D007321 2.3e-09 65.5 74 56.8
arahy.Tifrunner.gnm1.ann1.UTH6FS Arachis hypogaea HOM05D004182 ORTHO05D007321 3.9e-09 64.7 58 63.8
arahy.Tifrunner.gnm1.ann1.DWP51K Arachis hypogaea HOM05D000963 ORTHO05D007321 6.6e-09 63.9 58 63.8
arahy.Tifrunner.gnm1.ann1.NV4G0I Arachis hypogaea HOM05D004182 ORTHO05D007321 6.6e-09 63.9 58 63.8
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 6.6e-09 63.9 58 63.8
arahy.Tifrunner.gnm1.ann1.TV6F30 Arachis hypogaea HOM05D004182 ORTHO05D007321 6.6e-09 63.9 58 63.8
Sopen10g016590 Solanum pennellii HOM05D004182 ORTHO05D007321 6.6e-09 63.9 58 63.8
arahy.Tifrunner.gnm1.ann1.04MME8 Arachis hypogaea HOM05D004182 ORTHO05D007321 8.7e-09 63.5 58 63.8
arahy.Tifrunner.gnm1.ann1.MI7UCB Arachis hypogaea HOM05D004182 ORTHO05D007321 8.7e-09 63.5 58 63.8
EL10Ac7g17372 Beta vulgaris HOM05D004182 ORTHO05D007321 8.7e-09 63.5 58 63.8
EL10As10g23966 Beta vulgaris HOM05D004182 ORTHO05D007321 8.7e-09 63.5 58 63.8
Ca_24280_v3 Cicer arietinum L. HOM05D004182 ORTHO05D007321 1.1e-08 63.2 58 63.8
BolSC29t60554H Brassica oleracea HOM05D004182 ORTHO05D007321 1.5e-08 62.8 59 62.7
EL10Ac8g19701 Beta vulgaris HOM05D004182 ORTHO05D007321 2.5e-08 62.0 66 59.1
Psat0s9163g0080 Pisum sativum HOM05D004182 ORTHO05D007321 5.6e-08 60.8 58 62.1
Lsat_1_v5_gn_0_47640 Lactuca sativa HOM05D004182 ORTHO05D007321 7.3e-08 60.5 58 62.1
Psat0s2011g0080 Pisum sativum HOM05D004182 ORTHO05D007321 9.6e-08 60.1 58 60.3
Migut.I00342 Erythranthe guttata HOM05D004182 ORTHO05D007321 1.6e-07 59.3 38 86.8
Glyma.09G164000 Glycine max HOM05D004182 ORTHO05D007321 1.6e-07 59.3 44 77.3
arahy.Tifrunner.gnm1.ann1.73L6LP Arachis hypogaea HOM05D004182 ORTHO05D007321 2.8e-07 58.5 58 60.3
Psat7g033600 Pisum sativum HOM05D004182 ORTHO05D007321 2.8e-07 58.5 58 60.3
Ciclev10010312m.g Citrus clementina HOM05D000071 ORTHO05D000029 6.2e-07 57.4 35 88.6
Psat5g118800 Pisum sativum HOM05D004182 ORTHO05D007321 6.2e-07 57.4 58 58.6
Sopen02g002730 Solanum pennellii HOM05D004182 ORTHO05D007321 6.2e-07 57.4 58 58.6
Hma1.2p1_0594F.1_g185812 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.1e-06 56.6 37 83.8
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 1.4e-06 56.2 37 83.8
Sed0007203 Sechium edule HOM05D004182 ORTHO05D007321 1.4e-06 56.2 38 84.2
Sed0018388 Sechium edule HOM05D004182 ORTHO05D007321 1.4e-06 56.2 38 84.2
Sed0018833 Sechium edule HOM05D004182 ORTHO05D007321 1.4e-06 56.2 38 84.2
Sed0022676 Sechium edule HOM05D004182 ORTHO05D007321 1.4e-06 56.2 38 84.2
Hma1.2p1_1418F.1_g282260 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.8e-06 55.8 58 56.9
Sc14g0004760 Simmondsia chinensis HOM05D004182 ORTHO05D007321 2.4e-06 55.5 75 50.7
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 4.0e-06 54.7 76 50.0
Psat5g167880 Pisum sativum HOM05D000009 ORTHO05D000008 4.0e-06 54.7 58 58.6
Nn219s45281 Nelumbo nucifera HOM05D004182 ORTHO05D007321 5.2e-06 54.3 51 62.7
Nn442s46688 Nelumbo nucifera HOM05D004182 ORTHO05D007321 5.2e-06 54.3 51 62.7
C09p40270 Brassica napus HOM05D004182 ORTHO05D007321 6.9e-06 53.9 58 56.9
Glyma.03G084500 Glycine max HOM05D004182 ORTHO05D007321 6.9e-06 53.9 50 66.0
Hma1.2p1_0043F.1_g025830 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 9.0e-06 53.5 58 51.7
Lsat_1_v5_gn_8_139821 Lactuca sativa HOM05D000043 ORTHO05D000223 9.0e-06 53.5 30 86.7
SHI51824 Sapria himalayana HOM05D001607 ORTHO05D010610 9.0e-06 53.5 30 86.7


User provided reference genes

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