Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 2.3e-88 328.9 177 100.0
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 3.5e-84 315.1 193 90.7
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 7.5e-79 297.4 193 86.5
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 7.5e-79 297.4 193 86.5
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 4.9e-78 294.7 193 82.9
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 8.3e-78 293.9 193 79.3
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 1.4e-77 293.1 193 82.4
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 1.4e-77 293.1 193 82.4
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 1.4e-77 293.1 193 79.3
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 3.2e-77 292.0 193 81.9
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 5.9e-76 287.7 196 78.1
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 4.7e-73 278.1 196 75.0
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 9.5e-66 253.8 196 67.3
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 8.0e-65 250.8 196 67.3
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 3.1e-64 248.8 196 67.9
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 4.0e-64 248.4 196 67.3
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 1.4e-61 240.0 148 85.8
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 2.4e-61 239.2 196 63.3
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 1.2e-47 193.7 195 54.4
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 9.0e-40 167.5 184 50.0
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 3.8e-38 162.2 186 46.2
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 6.4e-38 161.4 185 47.6
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 6.4e-38 161.4 185 47.6
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 6.4e-38 161.4 185 47.6
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 8.4e-38 161.0 185 47.0
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 8.4e-38 161.0 185 47.0
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.4e-37 160.2 189 46.6
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.9e-37 159.8 185 47.0
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 3.2e-37 159.1 185 47.0
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 4.2e-37 158.7 174 49.4
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 7.1e-37 157.9 185 48.1
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.2e-36 157.1 185 47.6
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 1.2e-36 157.1 200 45.5
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 1.6e-36 156.8 184 47.8
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 1.6e-36 156.8 189 45.0
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 2.1e-36 156.4 181 47.5
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 2.1e-36 156.4 186 50.0
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 2.1e-36 156.4 185 45.4
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 2.7e-36 156.0 185 47.0
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 2.7e-36 156.0 186 47.8
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 6.0e-36 154.8 186 45.7
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.0e-35 154.1 177 45.8
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 1.0e-35 154.1 189 45.5
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 1.3e-35 153.7 148 54.1
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.3e-35 153.7 185 44.9
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 2.3e-35 152.9 173 48.0
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 3.0e-35 152.5 185 44.9
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 3.0e-35 152.5 180 47.2
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 3.9e-35 152.1 180 45.0
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 3.9e-35 152.1 175 47.4
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 5.1e-35 151.8 148 52.0
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 5.1e-35 151.8 176 47.7
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 5.1e-35 151.8 186 45.7
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 6.6e-35 151.4 187 46.0
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 6.6e-35 151.4 182 46.2
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 8.7e-35 151.0 185 44.9
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 8.7e-35 151.0 176 47.7
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 1.1e-34 150.6 185 44.9
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 1.1e-34 150.6 184 44.6
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.5e-34 150.2 187 46.5
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 1.5e-34 150.2 186 45.7
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.5e-34 150.2 175 45.7
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.5e-34 150.2 175 45.7
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.5e-34 150.2 185 44.3
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.9e-34 149.8 180 44.4
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 1.9e-34 149.8 186 48.9
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 1.9e-34 149.8 187 45.5
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 1.9e-34 149.8 183 47.0
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 2.5e-34 149.4 148 54.1
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 2.5e-34 149.4 185 43.2
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.5e-34 149.4 175 46.3
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 2.5e-34 149.4 175 46.3
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 2.5e-34 149.4 185 43.8
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 3.3e-34 149.1 148 53.4
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 3.3e-34 149.1 188 44.7
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 3.3e-34 149.1 180 44.4
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 4.3e-34 148.7 187 44.4
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 4.3e-34 148.7 188 44.7
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 4.3e-34 148.7 175 45.7
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 4.3e-34 148.7 176 46.0
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 5.6e-34 148.3 188 44.1
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 5.6e-34 148.3 180 44.4
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 5.6e-34 148.3 181 44.2
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 7.3e-34 147.9 177 46.9
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 7.3e-34 147.9 185 45.9
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.3e-33 147.1 180 44.4
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.3e-33 147.1 180 44.4
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 1.6e-33 146.7 177 47.5
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 2.1e-33 146.4 183 43.7
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 2.1e-33 146.4 185 45.4
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 3.6e-33 145.6 182 44.5
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 4.8e-33 145.2 175 45.1
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 6.2e-33 144.8 180 44.4
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 6.2e-33 144.8 205 41.5
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 6.2e-33 144.8 182 44.5
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 6.2e-33 144.8 148 52.0
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.1e-32 144.1 176 46.0
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 1.1e-32 144.1 174 45.4
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 1.8e-32 143.3 148 51.4
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 1.8e-32 143.3 182 43.4
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 2.4e-32 142.9 189 43.4
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 3.1e-32 142.5 148 50.0
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 3.1e-32 142.5 186 43.5
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 4.0e-32 142.1 185 41.6
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 9.0e-32 141.0 185 41.1
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 1.2e-31 140.6 148 50.0
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 1.5e-31 140.2 185 42.7
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 1.5e-31 140.2 148 51.4
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.5e-31 140.2 202 39.1
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 2.0e-31 139.8 185 42.7
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 3.4e-31 139.0 148 50.0
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 5.8e-31 138.3 176 43.2
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 1.9e-29 133.3 170 45.9
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 6.0e-28 128.3 178 39.3
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 5.1e-27 125.2 160 42.5
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 8.7e-27 124.4 169 40.8
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 4.3e-26 122.1 142 43.7
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 2.8e-25 119.4 194 39.2
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.8e-25 119.4 139 43.9
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 3.7e-25 119.0 132 45.5
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 1.5e-23 113.6 182 37.9
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.5e-23 113.6 132 47.7
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.1e-18 97.4 108 46.3
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 1.3e-17 94.0 134 45.5
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 2.2e-14 83.2 136 36.0
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 2.3e-11 73.2 111 36.0
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 1.5e-10 70.5 137 33.6
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 5.7e-10 68.6 64 48.4
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 2.2e-09 66.6 73 47.9
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 8.2e-09 64.7 138 30.4
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 1.8e-08 63.5 127 33.1
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 3.1e-08 62.8 72 45.8
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 7.7e-07 58.2 88 40.9
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 6.5e-06 55.1 88 34.1


User provided reference genes

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