Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 7.2e-82 307.4 175 100.0
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 7.2e-82 307.4 175 100.0
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 2.3e-80 302.4 175 98.9
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 2.3e-80 302.4 175 98.9
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-69 266.9 175 77.7
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-69 266.9 175 77.7
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 1.1e-69 266.9 175 77.7
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 6.5e-67 257.7 175 75.4
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 6.5e-67 257.7 175 75.4
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 2.3e-64 249.2 180 76.1
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 2.8e-62 242.3 179 72.6
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 2.8e-54 215.7 174 67.2
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 7.0e-53 211.1 177 76.8
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 3.8e-43 178.7 178 67.4
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 1.5e-42 176.8 182 59.9
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 1.3e-35 153.7 177 49.2
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 2.3e-35 152.9 180 49.4
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 2.3e-35 152.9 184 48.9
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 2.3e-35 152.9 180 49.4
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 2.3e-35 152.9 184 48.9
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 2.5e-34 149.4 183 49.7
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 4.3e-34 148.7 181 49.7
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 4.3e-34 148.7 181 49.7
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 5.6e-34 148.3 180 48.3
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 5.6e-34 148.3 181 49.7
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 5.6e-34 148.3 180 48.3
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 5.6e-34 148.3 181 49.7
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 7.3e-34 147.9 178 48.9
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 2.8e-33 146.0 181 47.0
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 3.6e-33 145.6 181 46.4
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 6.2e-33 144.8 180 47.8
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 2.3e-32 142.9 183 47.0
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 4.0e-32 142.1 149 53.7
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 5.2e-32 141.7 185 46.5
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 5.8e-31 138.3 183 46.4
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 7.5e-31 137.9 187 57.8
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 2.9e-30 136.0 178 50.0
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.4e-29 133.7 180 56.7
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 3.5e-28 129.0 202 48.0
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.1e-26 124.0 176 54.0
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.1e-26 124.0 122 56.6
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 1.4e-24 117.1 87 70.1
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 3.7e-22 109.0 160 41.9
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 6.4e-22 108.2 81 74.1
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 2.4e-21 106.3 202 41.1
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 6.6e-19 98.2 126 54.0
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 6.6e-19 98.2 212 37.3
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 4.3e-18 95.5 193 38.9
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 5.6e-18 95.1 187 42.8
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.2e-17 94.0 193 38.3
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.1e-17 93.2 191 40.8
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 3.6e-17 92.4 195 37.9
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 1.8e-16 90.1 198 39.4
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 2.3e-16 89.7 197 38.6
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 4.0e-16 89.0 186 38.7
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 5.2e-16 88.6 175 38.3
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 8.9e-16 87.8 200 38.5
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 8.9e-16 87.8 200 38.5
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 1.2e-15 87.4 189 38.6
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 1.5e-15 87.0 117 45.3
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 2.0e-15 86.7 177 39.5
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 2.6e-15 86.3 153 43.1
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 4.4e-15 85.5 185 40.0
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 9.9e-15 84.3 151 41.7
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 1.3e-14 84.0 192 40.1
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.7e-14 83.6 204 36.3
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 2.2e-14 83.2 179 37.4
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 2.2e-14 83.2 146 43.8
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 3.7e-14 82.4 204 37.7
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 3.7e-14 82.4 196 38.3
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 3.7e-14 82.4 190 36.3
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 4.9e-14 82.0 192 38.5
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 6.4e-14 81.6 153 39.2
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 6.4e-14 81.6 153 39.2
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 8.4e-14 81.3 176 38.6
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 1.1e-13 80.9 136 41.9
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.4e-13 80.5 199 38.2
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 1.9e-13 80.1 133 41.4
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 1.9e-13 80.1 201 34.3
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 4.1e-13 79.0 150 38.7
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 4.1e-13 79.0 138 41.3
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 5.4e-13 78.6 199 34.7
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 5.4e-13 78.6 130 41.5
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 5.4e-13 78.6 193 37.3
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 9.2e-13 77.8 159 36.5
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 9.2e-13 77.8 160 36.2
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 9.2e-13 77.8 179 36.9
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 9.2e-13 77.8 179 36.3
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 1.2e-12 77.4 93 48.4
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 1.2e-12 77.4 149 37.6
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.6e-12 77.0 138 42.8
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.6e-12 77.0 154 37.7
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.6e-12 77.0 179 38.0
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 1.6e-12 77.0 149 43.6
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.1e-12 76.6 144 38.9
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 2.7e-12 76.3 198 34.8
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 6.0e-12 75.1 191 36.1
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 6.0e-12 75.1 153 38.6
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 7.8e-12 74.7 132 39.4
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 7.8e-12 74.7 185 37.3
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 1.0e-11 74.3 148 35.8
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 1.0e-11 74.3 174 36.2
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 1.3e-11 73.9 185 35.7
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 1.7e-11 73.6 188 37.8
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 1.7e-11 73.6 156 37.8
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 2.3e-11 73.2 185 36.8
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 2.3e-11 73.2 160 37.5
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 3.0e-11 72.8 175 36.0
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.9e-11 72.4 185 36.8
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 6.6e-11 71.6 202 35.6
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 8.6e-11 71.2 176 34.7
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 8.6e-11 71.2 183 34.4
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.1e-10 70.9 110 46.4
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 1.1e-10 70.9 171 33.9
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.1e-10 70.9 201 31.8
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 1.5e-10 70.5 79 54.4
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.9e-10 70.1 188 36.2
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 1.9e-10 70.1 186 35.5
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.5e-10 69.7 137 43.1
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 3.3e-10 69.3 165 35.8
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 4.3e-10 68.9 203 35.0
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 5.6e-10 68.6 79 50.6
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 7.3e-10 68.2 142 41.5
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 7.3e-10 68.2 198 32.8
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 9.6e-10 67.8 100 43.0
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 9.6e-10 67.8 81 49.4
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.6e-09 67.0 181 36.5
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 2.8e-09 66.2 195 32.8
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 2.8e-09 66.2 193 34.7
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 2.8e-09 66.2 158 32.9
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 4.7e-09 65.5 182 34.6
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 4.7e-09 65.5 96 45.8
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 6.2e-09 65.1 147 36.1
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.1e-08 64.3 79 45.6
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 1.1e-08 64.3 176 34.1
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.4e-08 63.9 183 32.8
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 8.9e-08 61.2 73 49.3
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 1.5e-07 60.5 183 32.8
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 1.5e-07 60.5 166 31.9
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 3.4e-07 59.3 142 33.8
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 9.9e-07 57.8 87 43.7
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 4.9e-06 55.5 119 34.5


User provided reference genes

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