Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26344 Brassica carinata HOM05D003373 ORTHO05D004419 9.0e-74 280.4 168 100.0
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 3.3e-68 261.9 161 98.1
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 5.5e-63 244.6 163 92.0
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 7.2e-63 244.2 165 85.5
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 2.3e-61 239.2 163 84.0
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 3.0e-61 238.8 163 84.0
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 3.4e-57 225.3 169 75.1
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 1.9e-55 219.5 156 79.5
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 7.2e-55 217.6 156 78.8
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 1.6e-54 216.5 159 78.0
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 3.0e-53 212.2 156 77.6
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 1.1e-52 210.3 155 83.2
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 1.1e-52 210.3 158 74.1
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 2.0e-52 209.5 156 73.1
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 4.3e-52 208.4 156 71.8
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 8.2e-51 204.1 157 73.2
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 3.8e-48 195.3 159 77.4
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 3.6e-46 188.7 160 65.0
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 1.3e-43 180.3 158 63.3
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 2.8e-43 179.1 166 61.4
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 6.3e-43 177.9 153 61.4
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 1.1e-42 177.2 163 62.0
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.8e-42 176.4 162 62.3
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 1.8e-42 176.4 159 62.3
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 3.1e-42 175.6 160 60.0
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 5.3e-42 174.9 159 64.8
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 7.0e-42 174.5 162 64.2
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 7.0e-42 174.5 160 60.6
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.6e-41 173.3 164 63.4
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 2.6e-41 172.6 166 65.7
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 3.5e-41 172.2 161 56.5
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 4.5e-41 171.8 174 55.2
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 7.7e-41 171.0 159 59.7
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 1.3e-40 170.2 162 58.0
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 1.3e-40 170.2 171 58.5
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 1.7e-40 169.9 160 60.0
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.7e-40 169.9 162 58.6
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 1.7e-40 169.9 153 58.2
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 2.2e-40 169.5 153 59.5
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 2.9e-40 169.1 159 66.7
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 2.9e-40 169.1 148 62.8
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 3.8e-40 168.7 162 58.6
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 3.8e-40 168.7 153 60.1
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 5.0e-40 168.3 167 55.7
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 5.0e-40 168.3 165 59.4
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 5.0e-40 168.3 166 57.8
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 6.5e-40 167.9 162 56.8
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 6.5e-40 167.9 149 57.7
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 6.5e-40 167.9 170 59.4
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 8.5e-40 167.5 156 59.0
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 1.1e-39 167.2 169 58.0
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 1.5e-39 166.8 160 57.5
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 1.9e-39 166.4 152 59.9
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 2.5e-39 166.0 150 60.0
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 2.5e-39 166.0 165 57.0
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 4.2e-39 165.2 152 59.2
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 5.5e-39 164.9 164 56.7
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 7.2e-39 164.5 151 57.6
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 9.4e-39 164.1 160 56.2
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 9.4e-39 164.1 167 53.3
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 9.4e-39 164.1 162 64.2
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 1.6e-38 163.3 166 57.8
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 1.6e-38 163.3 160 55.6
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 1.6e-38 163.3 164 56.1
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 2.1e-38 162.9 158 58.9
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 2.1e-38 162.9 166 51.8
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 2.7e-38 162.5 165 53.3
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 2.7e-38 162.5 154 59.7
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 3.6e-38 162.2 162 56.2
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 4.7e-38 161.8 170 54.7
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 6.1e-38 161.4 160 55.6
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 1.0e-37 160.6 159 54.1
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 1.4e-37 160.2 160 56.2
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 1.4e-37 160.2 150 58.0
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 1.8e-37 159.8 154 64.3
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 1.8e-37 159.8 171 52.6
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 1.8e-37 159.8 154 55.2
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 3.0e-37 159.1 170 61.2
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 4.0e-37 158.7 154 57.1
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 6.7e-37 157.9 155 56.1
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 8.8e-37 157.5 165 53.9
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 8.8e-37 157.5 152 58.6
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 8.8e-37 157.5 152 56.6
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 1.5e-36 156.8 161 54.0
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 1.5e-36 156.8 153 57.5
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 2.0e-36 156.4 160 54.4
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 2.0e-36 156.4 165 52.1
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 2.6e-36 156.0 164 59.8
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 3.3e-36 155.6 162 56.8
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 7.5e-36 154.5 169 51.5
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 9.7e-36 154.1 157 61.1
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 9.7e-36 154.1 165 61.2
Nitab4.5_0008971g0050 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.2e-35 152.9 157 56.7
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 2.2e-35 152.9 157 63.7
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 3.7e-35 152.1 167 56.3
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 3.7e-35 152.1 165 49.7
Nitab4.5_0002382g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 3.7e-35 152.1 157 55.4
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 4.8e-35 151.8 165 55.2
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 4.8e-35 151.8 172 54.1
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 4.8e-35 151.8 152 57.9
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 4.8e-35 151.8 155 55.5
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 6.3e-35 151.4 231 44.2
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 6.3e-35 151.4 160 61.2
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 8.2e-35 151.0 166 59.6
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 8.2e-35 151.0 166 59.6
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.1e-34 150.6 160 51.9
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 1.4e-34 150.2 163 52.1
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 1.8e-34 149.8 163 53.4
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 2.4e-34 149.4 166 59.0
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 2.4e-34 149.4 148 52.7
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 2.4e-34 149.4 148 52.7
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 4.1e-34 148.7 164 54.3
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 4.1e-34 148.7 169 52.1
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 5.3e-34 148.3 156 51.3
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 1.6e-33 146.7 191 51.3
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 2.0e-33 146.4 155 54.8
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 3.5e-33 145.6 154 53.2
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 3.5e-33 145.6 155 54.2
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 4.5e-33 145.2 161 50.9
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 4.5e-33 145.2 161 62.1
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 5.9e-33 144.8 168 51.2
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 7.7e-33 144.4 152 52.6
Solyc05g006900.2 Solanum lycopersicum HOM05D003373 ORTHO05D004419 7.7e-33 144.4 162 52.5
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 7.7e-33 144.4 155 54.2
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 1.3e-32 143.7 165 51.5
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 3.8e-32 142.1 162 52.5
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 6.5e-32 141.4 155 51.6
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 1.9e-31 139.8 169 48.5
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 4.2e-31 138.7 162 47.5
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 9.4e-31 137.5 161 52.8
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 4.7e-30 135.2 161 49.1
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 8.0e-30 134.4 161 47.8
ECA234G3640 Erigeron canadensis HOM05D003373 ORTHO05D004419 1.0e-29 134.0 167 46.7
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 3.0e-29 132.5 161 46.6
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 8.8e-29 131.0 160 48.1
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 8.8e-29 131.0 159 52.2
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 2.8e-27 125.9 147 49.7
Lalb_Chr17g0340241 Lupinus albus HOM05D003373 ORTHO05D004419 3.7e-27 125.6 135 55.6
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 8.3e-27 124.4 151 45.7
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 1.8e-26 123.2 150 46.7
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 1.6e-25 120.2 160 46.9
CiPaw.06G080000 Carya illinoinensis HOM05D003373 ORTHO05D004419 2.0e-25 119.8 129 48.8
Lsat_1_v5_gn_8_36201 Lactuca sativa HOM05D003373 ORTHO05D004419 2.9e-24 115.9 157 42.7
SMO012G0008 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 3.2e-23 112.5 167 43.7
TAR622G0593 Trochodendron aralioides HOM05D003373 ORTHO05D004419 3.6e-22 109.0 109 56.0
Haze_04255 Corylus avellana HOM05D003373 ORTHO05D004419 6.1e-22 108.2 125 50.4
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 6.1e-22 108.2 198 43.9
SEGI_00885 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 1.4e-21 107.1 192 40.1
Haze_17060 Corylus avellana HOM05D003373 ORTHO05D004419 4.0e-21 105.5 82 67.1
Nitab4.5_0003732g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.2e-20 104.0 125 49.6
SalBow3G2377 Salvia bowleyana HOM05D003373 ORTHO05D004419 2.6e-20 102.8 146 44.5
SalBow8G0803 Salvia bowleyana HOM05D003373 ORTHO05D004419 3.4e-20 102.4 123 49.6
HPP92_019601 Vanilla planifolia HOM05D003373 ORTHO05D004419 3.4e-20 102.4 129 46.5
BcaB03g14104 Brassica carinata HOM05D003373 ORTHO05D004419 4.4e-20 102.1 104 67.3
VMungo0540G1512 Vigna mungo HOM05D003373 ORTHO05D013173 4.9e-19 98.6 125 47.2
VMungo0464G1165 Vigna mungo HOM05D003373 ORTHO05D004419 3.1e-18 95.9 125 46.4
Mapoly0083s0034 Marchantia polymorpha HOM05D003373 ORTHO05D004419 1.2e-17 94.0 218 32.6
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 1.2e-17 94.0 226 31.9
SMO141G0251 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 2.0e-17 93.2 220 38.2
PGSC0003DMG400010979 Solanum tuberosum HOM05D003373 ORTHO05D013173 2.0e-17 93.2 82 63.4
AL3G40300 Arabidopsis lyrata HOM05D003373 ORTHO05D013173 1.0e-16 90.9 75 69.3
C09p33540 Brassica napus HOM05D003373 ORTHO05D013173 8.6e-16 87.8 74 68.9
BolC9t56189H Brassica oleracea HOM05D003373 ORTHO05D013173 8.6e-16 87.8 74 68.9
BraA03t12184Z Brassica rapa HOM05D003373 ORTHO05D013173 8.6e-16 87.8 75 70.7
A03p29950 Brassica napus HOM05D003373 ORTHO05D013173 1.1e-15 87.4 75 72.0
C03p36240 Brassica napus HOM05D003373 ORTHO05D013173 1.1e-15 87.4 75 72.0
BolC3t15933H Brassica oleracea HOM05D003373 ORTHO05D013173 1.1e-15 87.4 75 72.0
BcaC04g21286 Brassica carinata HOM05D003373 ORTHO05D013173 1.5e-15 87.0 74 68.9
BcaB01g01800 Brassica carinata HOM05D003373 ORTHO05D013173 1.9e-15 86.7 108 51.9
A09p26380 Brassica napus HOM05D003373 ORTHO05D013173 1.9e-15 86.7 74 68.9
BraA09t38212Z Brassica rapa HOM05D003373 ORTHO05D013173 1.9e-15 86.7 74 68.9
Thhalv10029189m.g Eutrema salsugineum HOM05D003373 ORTHO05D013173 3.3e-15 85.9 79 67.1
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 5.6e-15 85.1 230 29.6
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 5.6e-15 85.1 230 29.6
AT3G24690 Arabidopsis thaliana HOM05D003373 ORTHO05D013173 1.6e-14 83.6 64 71.9
AagrBONN_evm.TU.Sc2ySwM_228.3903 Anthoceros agrestis HOM05D003373 ORTHO05D004419 2.8e-14 82.8 227 29.1
CBR_g4061 Chara braunii HOM05D003373 ORTHO05D004419 1.5e-12 77.0 87 43.7
Medtr5g037970 Medicago truncatula HOM05D003373 ORTHO05D004419 2.6e-12 76.3 106 42.5
CSS0033815 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 8.0e-06 54.7 28 78.6
QL08p000192 Quercus lobata HOM05D003373 ORTHO05D004419 8.0e-06 54.7 51 62.7


User provided reference genes

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