Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 2.3e-276 954.9 469 100.0
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-262 909.4 469 95.5
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 5.1e-260 900.6 469 94.7
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-238 829.3 468 88.0
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 2.1e-237 825.5 470 85.5
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-236 822.8 470 85.3
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.8e-236 822.4 470 85.3
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 3.0e-236 821.6 470 85.1
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 3.0e-236 821.6 470 85.1
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 4.0e-236 821.2 470 86.4
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 5.2e-236 820.8 472 85.2
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 6.7e-236 820.5 470 84.9
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 2.6e-235 818.5 469 84.0
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 4.8e-234 814.3 469 87.8
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 5.3e-233 810.8 469 84.4
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.0e-232 808.9 470 83.4
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.1e-230 803.1 470 83.2
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-228 795.8 443 88.9
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.5e-222 776.2 469 81.9
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 1.4e-209 733.0 468 76.3
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 3.4e-203 711.8 389 91.8
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 7.8e-200 700.7 470 75.7
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-198 696.4 448 78.1
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 8.9e-188 660.6 468 67.7
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.6e-181 639.8 467 68.3
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 7.6e-179 630.9 467 66.6
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 2.4e-177 625.9 448 73.4
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 5.4e-177 624.8 467 66.0
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 1.6e-176 623.2 467 65.7
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.6e-176 623.2 466 66.1
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 5.1e-175 618.2 467 64.9
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 1.9e-174 616.3 460 63.9
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 2.5e-174 615.9 467 64.7
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 2.1e-173 612.8 469 62.3
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 3.6e-173 612.1 460 63.7
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 4.8e-173 611.7 468 62.6
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 8.1e-173 610.9 460 63.7
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 1.1e-172 610.5 464 63.8
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.4e-172 610.1 464 63.1
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.8e-172 609.8 458 63.8
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 2.4e-172 609.4 468 62.0
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.2e-171 607.1 460 63.5
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 3.8e-170 602.1 460 62.8
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 4.9e-170 601.7 460 62.8
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.4e-170 601.3 460 62.8
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.4e-169 600.1 460 62.6
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-168 597.0 491 61.7
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.2e-168 597.0 468 61.5
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 2.1e-168 596.3 460 62.6
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.6e-168 595.1 460 62.4
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 4.6e-168 595.1 468 61.1
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 6.0e-168 594.7 459 63.0
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 7.9e-168 594.3 460 61.5
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 1.3e-167 593.6 489 59.9
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.9e-167 592.0 438 63.9
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 3.3e-166 589.0 468 61.1
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 4.3e-166 588.6 439 64.7
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 4.3e-166 588.6 467 60.4
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 4.3e-166 588.6 467 61.0
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 7.4e-166 587.8 460 61.7
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 7.4e-166 587.8 467 60.8
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 2.1e-165 586.3 459 61.7
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 2.1e-165 586.3 461 61.2
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 2.8e-165 585.9 439 65.1
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 6.2e-165 584.7 460 60.7
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.4e-164 583.6 469 61.2
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 4.5e-163 578.6 464 59.9
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 7.6e-163 577.8 419 67.1
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 7.6e-163 577.8 475 58.9
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 9.9e-163 577.4 458 61.1
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 4.9e-162 575.1 460 59.6
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 6.4e-162 574.7 465 58.9
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 8.4e-162 574.3 470 59.4
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 8.4e-162 574.3 468 59.0
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 1.1e-161 573.9 461 59.9
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.5e-161 572.8 467 58.5
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 5.5e-161 571.6 461 59.9
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 1.2e-160 570.5 469 58.8
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.2e-160 570.5 470 58.5
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 1.6e-160 570.1 468 59.2
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 2.1e-160 569.7 458 60.5
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 6.0e-160 568.2 461 60.1
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 1.0e-159 567.4 472 58.5
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.0e-159 567.4 458 59.8
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 3.9e-159 565.5 469 60.6
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 3.3e-158 562.4 472 58.5
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 4.3e-158 562.0 462 58.0
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 5.6e-158 561.6 462 58.7
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 7.4e-158 561.2 458 58.7
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 2.8e-157 559.3 460 60.0
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 2.8e-157 559.3 465 59.1
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 8.2e-157 557.8 438 62.1
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 8.2e-157 557.8 460 59.3
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.4e-156 557.0 469 57.6
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 2.4e-156 556.2 433 62.4
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.5e-155 553.5 460 59.1
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 2.5e-153 546.2 412 62.6
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 4.6e-152 542.0 437 60.4
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.5e-150 537.0 461 57.7
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 1.9e-150 536.6 468 56.2
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 9.7e-150 534.3 463 55.9
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 3.1e-148 529.3 460 55.9
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 4.5e-147 525.4 460 55.4
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.9e-145 520.0 449 56.1
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 4.8e-141 505.4 436 57.8
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 5.9e-139 498.4 440 53.6
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 6.5e-138 495.0 471 53.5
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.1e-137 494.2 365 66.6
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.6e-136 490.3 460 51.3
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.6e-136 490.3 467 51.4
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 4.1e-132 475.7 465 51.2
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 7.7e-131 471.5 469 53.3
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.3e-130 470.7 491 48.9
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 1.3e-130 470.7 452 50.0
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 5.0e-130 468.8 479 52.8
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 6.1e-128 461.8 438 52.3
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.0e-127 461.1 359 61.6
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.3e-125 454.1 344 64.0
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 2.2e-117 426.8 509 45.8
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 4.8e-109 399.1 458 47.2
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 1.1e-105 387.9 503 43.5
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 8.3e-101 371.7 464 42.7
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 3.4e-94 349.7 227 78.4
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 7.8e-91 338.6 438 42.2
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-82 310.5 317 58.0
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 4.0e-79 299.7 432 38.0
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 3.2e-76 290.0 248 58.9
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 9.3e-68 261.9 192 66.1
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 1.6e-67 261.2 192 66.1
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.5e-67 260.0 189 66.1
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 3.5e-67 260.0 268 50.0
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-59 234.2 225 56.4
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 6.6e-58 229.2 222 55.9
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.5e-57 228.0 197 56.3
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 1.2e-54 218.4 385 40.0
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 2.6e-54 217.2 145 80.7
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 3.8e-53 213.4 149 65.1
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 4.9e-53 213.0 145 78.6
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 6.9e-39 166.0 178 52.8
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 2.6e-38 164.1 156 52.6
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.6e-35 154.8 117 65.0
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 1.9e-33 147.9 111 62.2
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 2.5e-33 147.5 77 88.3
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 5.7e-33 146.4 77 88.3
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 4.8e-32 143.3 214 44.9
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 8.2e-32 142.5 81 84.0
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 1.8e-31 141.4 103 68.0
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 4.1e-31 140.2 76 76.3
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.2e-30 138.7 115 65.2
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 1.1e-28 132.1 133 52.6
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 5.5e-28 129.8 69 87.0
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 1.0e-26 125.6 214 41.1
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 5.3e-23 113.2 82 64.6
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.5e-22 111.7 56 87.5
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 4.5e-22 110.2 86 65.1
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 3.8e-21 107.1 93 59.1
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 5.0e-21 106.7 218 39.4
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 5.5e-20 103.2 106 50.9
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 9.4e-20 102.4 50 100.0
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 1.1e-17 95.5 100 51.0
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.5e-17 95.1 57 66.7
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 2.8e-16 90.9 50 90.0
BcaC05g26339 Brassica carinata HOM05D010092 ORTHO05D012468 1.1e-15 89.0 188 39.4
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 2.0e-14 84.7 78 51.3
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 2.6e-14 84.3 116 40.5
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 5.9e-14 83.2 234 27.4
C05p23630 Brassica napus HOM05D004011 ORTHO05D033156 1.0e-13 82.4 41 97.6
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 2.9e-13 80.9 56 60.7
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.2e-11 75.5 178 29.2
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 4.0e-10 70.5 178 28.1
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 1.1e-09 68.9 56 66.1
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 9.7e-09 65.9 131 32.1
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-07 61.6 53 56.6
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.1e-07 60.8 78 38.5
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.1e-07 60.8 78 38.5
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 7.0e-07 59.7 53 52.8
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.0e-07 59.7 81 38.3
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 2.0e-06 58.2 40 65.0


User provided reference genes

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