Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26305 Brassica carinata HOM05D001690 ORTHO05D009096 5.1e-33 143.7 65 100.0
BcaB07g32380 Brassica carinata HOM05D001690 ORTHO05D009096 5.8e-21 103.6 47 100.0
BcaC05g26303 Brassica carinata HOM05D001690 ORTHO05D009096 4.9e-20 100.5 47 95.7
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 4.9e-20 100.5 47 95.7
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 4.9e-20 100.5 47 95.7
BolC5t31021H Brassica oleracea HOM05D001690 ORTHO05D009096 4.9e-20 100.5 47 95.7
BraA09t39574Z Brassica rapa HOM05D001690 ORTHO05D009096 4.9e-20 100.5 47 95.7
Sp1g21410 Schrenkiella parvula HOM05D001690 ORTHO05D009096 1.6e-18 95.5 47 89.4
CARHR024380 Cardamine hirsuta HOM05D001690 ORTHO05D009096 5.1e-17 90.5 45 88.9
Carub.0001s2353 Capsella rubella HOM05D001690 ORTHO05D009096 2.5e-16 88.2 45 86.7
Thhalv10008745m.g Eutrema salsugineum HOM05D001690 ORTHO05D009096 2.5e-16 88.2 45 84.4
AT1G24095 Arabidopsis thaliana HOM05D001690 ORTHO05D009096 5.7e-16 87.0 45 84.4
Hma1.2p1_0160F.1_g070590 Hydrangea macrophylla HOM05D001690 ORTHO05D009096 2.1e-15 85.1 45 77.8
Manes.01G196800 Manihot esculenta HOM05D001690 ORTHO05D009096 2.1e-15 85.1 45 80.0
Sabra08G0111900 Salix brachista HOM05D001690 ORTHO05D009096 2.1e-15 85.1 45 82.2
AL1G37900 Arabidopsis lyrata HOM05D001690 ORTHO05D009096 2.8e-15 84.7 45 82.2
QL03p062480 Quercus lobata HOM05D001690 ORTHO05D009096 2.8e-15 84.7 45 77.8
CiPaw.06G074800 Carya illinoinensis HOM05D001690 ORTHO05D009096 3.7e-15 84.3 45 77.8
COL.COLO4_37898 Corchorus olitorius HOM05D001690 ORTHO05D002627 4.8e-15 84.0 45 77.8
Medtr5g035310 Medicago truncatula HOM05D001690 ORTHO05D009096 4.8e-15 84.0 45 75.6
TPR.G13490 Trifolium pratense HOM05D001690 ORTHO05D009096 4.8e-15 84.0 45 75.6
Aqoxy3G03080 Aquilegia oxysepala HOM05D001690 ORTHO05D009096 8.2e-15 83.2 45 71.1
Psat2g111480 Pisum sativum HOM05D001690 ORTHO05D009096 8.2e-15 83.2 45 75.6
Ciclev10033984m.g Citrus clementina HOM05D001690 ORTHO05D009096 1.1e-14 82.8 45 75.6
Potri.008G147000 Populus trichocarpa HOM05D001690 ORTHO05D009096 1.1e-14 82.8 43 81.4
Aa31LG7G7870 Aethionema arabicum HOM05D001690 ORTHO05D009096 1.8e-14 82.0 43 83.7
CSS0041586 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D009096 2.4e-14 81.6 44 77.3
Lj2g0027896 Lotus japonicus HOM05D001690 ORTHO05D009096 3.1e-14 81.3 45 75.6
unitig_699.g19928 Utricularia gibba HOM05D001690 ORTHO05D009096 3.1e-14 81.3 45 75.6
vmacro01197 Vaccinium macrocarpon HOM05D001690 ORTHO05D009096 3.1e-14 81.3 45 75.6
CAN.G1160.1 Capsicum annuum HOM05D001690 ORTHO05D009096 4.1e-14 80.9 45 73.3
Solyc05g006100.4 Solanum lycopersicum HOM05D001690 ORTHO05D009096 4.1e-14 80.9 45 73.3
Sopen05g002120 Solanum pennellii HOM05D001690 ORTHO05D009096 4.1e-14 80.9 45 73.3
PGSC0003DMG400015577 Solanum tuberosum HOM05D001690 ORTHO05D009096 4.1e-14 80.9 45 73.3
GSVIVG01020171001 Vitis vinifera HOM05D001690 ORTHO05D009096 4.1e-14 80.9 45 71.1
Lalb_Chr09g0326501 Lupinus albus HOM05D001690 ORTHO05D009096 5.3e-14 80.5 45 75.6
Peaxi162Scf00421g00710 Petunia axillaris HOM05D001690 ORTHO05D009096 5.3e-14 80.5 45 73.3
PGR119G1314 Punica granatum HOM05D001690 ORTHO05D009096 5.3e-14 80.5 45 71.1
SGA_v2.0_scaffold8G04246 Striga asiatica HOM05D001690 ORTHO05D009096 5.3e-14 80.5 45 75.6
TWI18G1158 Tripterygium wilfordii HOM05D001690 ORTHO05D002627 5.3e-14 80.5 45 66.7
Haze_12139 Corylus avellana HOM05D001690 ORTHO05D009096 6.9e-14 80.1 45 73.3
Dinv30998 Davidia involucrata HOM05D001690 ORTHO05D009096 6.9e-14 80.1 45 75.6
Dinv31105 Davidia involucrata HOM05D001690 ORTHO05D009096 6.9e-14 80.1 45 75.6
Gohir.A03G142400 Gossypium hirsutum HOM05D001690 ORTHO05D009096 6.9e-14 80.1 45 71.1
Gohir.D02G165700 Gossypium hirsutum HOM05D001690 ORTHO05D009096 6.9e-14 80.1 45 71.1
Gorai.005G185800 Gossypium raimondii HOM05D001690 ORTHO05D009096 6.9e-14 80.1 45 71.1
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 9.0e-14 79.7 45 73.3
MSTRG.621 Avicennia marina HOM05D001690 ORTHO05D009096 9.0e-14 79.7 45 73.3
Rhsim12G0050200 Rhododendron simsii HOM05D001690 ORTHO05D009096 9.0e-14 79.7 45 73.3
SalBow2G0686 Salvia bowleyana HOM05D001690 ORTHO05D009096 9.0e-14 79.7 45 75.6
SalBow2G2592 Salvia bowleyana HOM05D001690 ORTHO05D009096 9.0e-14 79.7 45 75.6
Cpa.g.sc5.350 Carica papaya HOM05D001690 ORTHO05D009096 1.5e-13 79.0 45 73.3
Cfa009103 Carpinus fangiana HOM05D001690 ORTHO05D009096 1.5e-13 79.0 45 71.1
Duzib248G1036 Durio zibethinus HOM05D001690 ORTHO05D009096 1.5e-13 79.0 53 66.0
RcHm_v2.0_Chr4g0444521 Rosa chinensis HOM05D001690 ORTHO05D009096 1.5e-13 79.0 45 75.6
TWI36G1443 Tripterygium wilfordii HOM05D001690 ORTHO05D002627 1.5e-13 79.0 45 64.4
DCAR_026553 Daucus carota HOM05D001690 ORTHO05D009096 2.0e-13 78.6 44 72.7
FvH4_4g35000 Fragaria vesca HOM05D001690 ORTHO05D009096 2.0e-13 78.6 45 73.3
FAN07G2318 Fragaria x ananassa HOM05D001690 ORTHO05D009096 2.0e-13 78.6 45 73.3
FAN12G1851 Fragaria x ananassa HOM05D001690 ORTHO05D009096 2.0e-13 78.6 45 73.3
FAN22G0616 Fragaria x ananassa HOM05D001690 ORTHO05D009096 2.0e-13 78.6 45 73.3
Thecc.02G242600 Theobroma cacao HOM05D001690 ORTHO05D009096 2.0e-13 78.6 45 71.1
Atru.chr11.1963 Acer truncatum HOM05D001690 ORTHO05D009096 2.6e-13 78.2 43 74.4
arahy.Tifrunner.gnm1.ann1.00SZA6 Arachis hypogaea HOM05D001690 ORTHO05D009096 2.6e-13 78.2 45 71.1
THA.LOC109116916 Tarenaya hassleriana HOM05D001690 ORTHO05D009096 2.6e-13 78.2 42 78.6
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 2.6e-13 78.2 45 66.7
Lj3C1049G3 Lonicera japonica HOM05D001690 ORTHO05D009096 3.4e-13 77.8 43 74.4
Nitab4.5_0000257g0260 Nicotiana tabacum HOM05D001690 ORTHO05D009096 4.5e-13 77.4 45 73.3
vmacro12906 Vaccinium macrocarpon HOM05D001690 ORTHO05D009096 4.5e-13 77.4 45 71.1
Cc11_g14250 Coffea canephora HOM05D001690 ORTHO05D009096 5.9e-13 77.0 45 71.1
Migut.L01445 Erythranthe guttata HOM05D001690 ORTHO05D009096 5.9e-13 77.0 45 73.3
Sed0019838 Sechium edule HOM05D001690 ORTHO05D009096 5.9e-13 77.0 45 75.6
Glyma.02G037900 Glycine max HOM05D001690 ORTHO05D009096 7.6e-13 76.6 45 75.6
MBI14_g12607_MAGBIO Magnolia biondii HOM05D001690 ORTHO05D009096 7.6e-13 76.6 45 62.2
Nitab4.5_0005722g0030 Nicotiana tabacum HOM05D001690 ORTHO05D009096 7.6e-13 76.6 45 73.3
HPP92_017336 Vanilla planifolia HOM05D001690 ORTHO05D009096 7.6e-13 76.6 45 68.9
Zm00001eb371950 Zea mays HOM05D001690 ORTHO05D009096 1.0e-12 76.3 43 67.4
ECA234G3380 Erigeron canadensis HOM05D006031 ORTHO05D007417 1.3e-12 75.9 43 67.4
Lsat_1_v5_gn_4_6521 Lactuca sativa HOM05D001690 ORTHO05D009096 1.3e-12 75.9 45 68.9
MD13G1087000 Malus domestica HOM05D001690 ORTHO05D009096 2.2e-12 75.1 45 71.1
CANSAT25G2126 Cannabis sativa HOM05D001690 ORTHO05D009096 2.9e-12 74.7 44 70.5
CANSAT35G0663 Cannabis sativa HOM05D001690 ORTHO05D009096 2.9e-12 74.7 44 70.5
HanXRQChr04g0103621 Helianthus annuus HOM05D001690 ORTHO05D009096 2.9e-12 74.7 45 66.7
CDE04G3384 Ceratophyllum demersum HOM05D001690 ORTHO05D009096 3.8e-12 74.3 43 69.8
Hund05955 Selenicereus undatus HOM05D001690 ORTHO05D009096 3.8e-12 74.3 46 63.0
PSO063G0131 Papaver somniferum HOM05D001690 ORTHO05D009096 6.5e-12 73.6 46 60.9
PSO832G0212 Papaver somniferum HOM05D001690 ORTHO05D009096 6.5e-12 73.6 46 60.9
EL10Ac5g10984 Beta vulgaris HOM05D001690 ORTHO05D009096 8.4e-12 73.2 45 64.4
AUR62026581 Chenopodium quinoa HOM05D001690 ORTHO05D009096 8.4e-12 73.2 45 66.7
Actinidia08182 Actinidia chinensis HOM05D001690 ORTHO05D009096 1.1e-11 72.8 45 66.7
Sc14g0008550 Simmondsia chinensis HOM05D001690 ORTHO05D009096 1.4e-11 72.4 44 70.5
AUR62039406 Chenopodium quinoa HOM05D001690 ORTHO05D009096 1.9e-11 72.0 45 66.7
ClCG05G025030 Citrullus lanatus HOM05D001690 ORTHO05D009096 2.5e-11 71.6 45 68.9
Prupe.1G259700 Prunus persica HOM05D001690 ORTHO05D009096 4.2e-11 70.9 45 68.9
Hund25316 Selenicereus undatus HOM05D001690 ORTHO05D009096 5.5e-11 70.5 45 62.2
MD16G1087300 Malus domestica HOM05D001690 ORTHO05D009096 9.3e-11 69.7 45 66.7
SEGI_04544 Sequoiadendron giganteum HOM05D001690 ORTHO05D009096 1.6e-10 68.9 45 62.2
VMungo1215G1997 Vigna mungo HOM05D001690 ORTHO05D009096 1.6e-10 68.9 45 64.4
CSS0030261 Camellia sinensis var. sinensis HOM05D001690 ORTHO05D009096 3.5e-10 67.8 37 78.4
CsaV3_5G031860 Cucumis sativus L. HOM05D001690 ORTHO05D009096 4.6e-10 67.4 45 64.4
EL10Ac6g14125 Beta vulgaris HOM05D001690 ORTHO05D009096 6.1e-10 67.0 45 62.2
Ah.03g132370 Amaranthus hybridus HOM05D000337 ORTHO05D000297 3.0e-09 64.7 43 60.5
Phvul.002G059700 Phaseolus vulgaris HOM05D001690 ORTHO05D009096 3.9e-09 64.3 45 62.2
SMO147G0177 Selaginella moellendorffii HOM05D001690 ORTHO05D009096 5.1e-09 63.9 44 59.1
CBR_g38731 Chara braunii HOM05D001690 ORTHO05D009096 2.5e-08 61.6 42 59.5
EL10Ac6g13729 Beta vulgaris HOM05D001690 ORTHO05D009096 1.8e-06 55.5 45 57.8


User provided reference genes

Program Settings