Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.1e-103 379.0 192 100.0
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 5.2e-102 374.4 193 99.5
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 3.2e-99 365.2 193 96.4
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 1.2e-93 346.7 180 97.8
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 4.9e-92 341.3 192 90.6
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 2.4e-91 339.0 180 95.6
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.3e-89 333.2 195 88.7
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 4.0e-86 321.6 192 87.0
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 6.9e-86 320.9 193 87.0
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 1.2e-85 320.1 193 85.0
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 1.2e-85 320.1 193 86.5
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.4e-85 318.5 192 86.5
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 2.9e-84 315.5 193 85.0
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 2.9e-84 315.5 193 85.0
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 1.1e-83 313.5 188 85.6
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.6e-74 283.1 191 75.9
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 2.1e-74 282.7 191 73.8
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 7.4e-64 247.7 155 83.9
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 3.7e-63 245.4 193 73.6
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 7.6e-61 237.7 182 71.4
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 6.3e-55 218.0 123 91.1
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.8e-49 199.9 193 57.0
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 3.9e-49 198.7 175 59.4
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.5e-48 196.8 192 55.7
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 2.6e-48 196.1 183 56.8
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.3e-48 195.7 183 56.3
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 5.7e-48 194.9 180 56.1
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 5.7e-48 194.9 184 56.0
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.7e-47 193.4 194 55.7
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.7e-47 193.4 190 56.8
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.7e-47 193.4 185 55.7
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 1.7e-47 193.4 176 58.0
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 3.7e-47 192.2 172 57.0
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 8.2e-47 191.0 176 54.5
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 1.4e-46 190.3 175 56.0
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 1.4e-46 190.3 175 57.7
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.8e-46 189.9 175 56.6
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 2.4e-46 189.5 183 53.6
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 2.4e-46 189.5 166 59.6
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 3.1e-46 189.1 176 56.2
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 4.1e-46 188.7 181 54.7
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 5.3e-46 188.3 182 55.5
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 7.0e-46 188.0 174 56.3
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 7.0e-46 188.0 173 54.9
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.5e-45 186.8 174 57.5
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 2.0e-45 186.4 176 55.1
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 2.6e-45 186.0 173 53.2
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 3.4e-45 185.7 193 54.4
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 4.5e-45 185.3 177 54.8
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 5.9e-45 184.9 175 55.4
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 5.9e-45 184.9 183 55.2
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 7.7e-45 184.5 183 53.6
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 7.7e-45 184.5 171 56.7
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 1.0e-44 184.1 171 56.7
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 1.0e-44 184.1 178 55.6
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 2.9e-44 182.6 174 54.6
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.9e-44 182.6 193 51.8
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 2.9e-44 182.6 178 53.4
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 2.9e-44 182.6 185 53.5
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 5.0e-44 181.8 179 53.6
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 5.0e-44 181.8 177 53.7
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 6.5e-44 181.4 172 54.1
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 8.5e-44 181.0 190 54.2
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 1.1e-43 180.6 184 52.7
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.4e-43 180.3 177 53.7
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.4e-43 180.3 176 52.3
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.9e-43 179.9 172 55.2
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.5e-43 179.5 175 54.3
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 2.5e-43 179.5 165 57.6
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 3.2e-43 179.1 172 53.5
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 4.2e-43 178.7 174 53.4
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 4.2e-43 178.7 183 52.5
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 4.2e-43 178.7 172 52.9
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 7.2e-43 177.9 190 53.7
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 7.2e-43 177.9 179 52.0
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 9.4e-43 177.6 181 52.5
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 9.4e-43 177.6 187 52.9
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 1.6e-42 176.8 179 52.5
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 2.1e-42 176.4 172 52.9
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 3.6e-42 175.6 172 52.9
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 3.6e-42 175.6 174 52.3
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.1e-42 174.9 190 52.6
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 8.0e-42 174.5 172 52.9
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 8.0e-42 174.5 199 49.2
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.0e-41 172.6 190 52.1
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 3.0e-41 172.6 170 53.5
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 6.7e-41 171.4 174 52.9
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.7e-41 171.4 190 52.1
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 3.3e-40 169.1 181 49.7
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 4.4e-40 168.7 183 52.5
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 7.4e-40 167.9 171 50.9
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 1.3e-39 167.2 133 63.2
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 2.8e-39 166.0 190 50.5
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.2e-39 164.5 171 49.7
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 1.1e-38 164.1 192 49.5
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.1e-38 164.1 212 44.8
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 1.8e-38 163.3 190 51.1
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 2.4e-38 162.9 190 51.1
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 3.1e-38 162.5 204 48.5
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 1.2e-37 160.6 192 47.4
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.6e-37 160.2 133 60.2
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.0e-37 159.8 164 51.2
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 2.6e-37 159.5 186 47.8
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 7.7e-37 157.9 237 40.5
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 1.0e-36 157.5 126 62.7
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.9e-36 156.0 138 59.4
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 2.9e-36 156.0 172 49.4
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.5e-36 154.5 162 50.0
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 1.5e-35 153.7 178 50.6
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 2.5e-35 152.9 125 61.6
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.5e-35 152.9 163 51.5
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 1.4e-33 147.1 171 49.1
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 3.0e-33 146.0 187 44.9
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 8.8e-33 144.4 109 67.0
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 1.2e-32 144.1 122 59.8
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 3.3e-32 142.5 187 44.4
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 5.7e-32 141.7 187 44.4
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 1.7e-31 140.2 165 49.1
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 2.8e-31 139.4 175 43.4
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 9.1e-30 134.4 144 50.7
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.0e-28 131.0 161 42.9
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.1e-27 127.5 194 41.2
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 9.4e-27 124.4 133 50.4
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.2e-24 117.5 160 43.1
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.2e-24 117.5 138 49.3
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.5e-24 117.1 127 49.6
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 2.0e-24 116.7 163 43.6
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 1.7e-23 113.6 125 49.6
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 4.8e-23 112.1 131 48.1
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 1.8e-22 110.2 128 47.7
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 5.4e-22 108.6 136 41.9
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.7e-20 103.6 128 45.3
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 6.1e-18 95.1 156 41.7
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 6.1e-18 95.1 182 33.5
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 3.0e-17 92.8 124 39.5
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 5.2e-17 92.0 84 56.0
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 6.8e-17 91.7 175 34.9
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 2.5e-11 73.2 60 58.3
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 7.3e-11 71.6 50 68.0
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 7.3e-11 71.6 50 68.0
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.1e-10 70.1 53 64.2
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 2.1e-10 70.1 54 63.0
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 2.8e-10 69.7 92 37.0
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 4.7e-10 68.9 50 66.0
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 8.0e-10 68.2 60 55.0
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 9.8e-08 61.2 124 36.3
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 3.7e-07 59.3 41 65.9


User provided reference genes

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