Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 4.2e-84 314.7 165 100.0
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 4.2e-84 314.7 165 100.0
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 4.2e-84 314.7 165 100.0
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 8.3e-80 300.4 165 95.8
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 6.8e-66 254.2 133 99.2
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 8.9e-66 253.8 133 99.2
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 4.3e-60 235.0 166 77.1
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 1.0e-58 230.3 165 76.4
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 6.8e-58 227.6 168 76.2
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 8.9e-58 227.3 164 76.8
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 1.5e-57 226.5 167 74.9
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 1.1e-55 220.3 168 75.0
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 1.6e-54 216.5 169 73.4
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 3.5e-54 215.3 169 72.8
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 3.9e-53 211.8 169 71.6
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 2.5e-52 209.1 170 70.6
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 2.3e-50 202.6 165 70.3
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 2.3e-50 202.6 165 70.3
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 1.2e-49 200.3 166 70.5
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 2.6e-49 199.1 165 69.1
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 2.6e-49 199.1 165 69.1
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 9.8e-49 197.2 165 69.1
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 2.7e-46 189.1 161 64.6
Carub.0002s1726 Capsella rubella HOM05D008070 ORTHO05D001888 1.9e-39 166.4 168 56.5
AT1G70540 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 2.1e-38 162.9 169 55.0
AL2G29930 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 2.7e-38 162.5 169 55.0
Thhalv10019249m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 6.0e-38 161.4 157 55.4
Sp5g25690 Schrenkiella parvula HOM05D008070 ORTHO05D001888 2.5e-36 156.0 167 52.7
CARHR063750 Cardamine hirsuta HOM05D008070 ORTHO05D001888 1.2e-35 153.7 169 52.7
BcaC03g15202 Brassica carinata HOM05D008070 ORTHO05D001888 1.6e-35 153.3 167 50.9
C02p27870 Brassica napus HOM05D008070 ORTHO05D001888 1.6e-35 153.3 167 50.9
BolC2t08833H Brassica oleracea HOM05D008070 ORTHO05D001888 1.6e-35 153.3 167 50.9
BraA02t06717Z Brassica rapa HOM05D008070 ORTHO05D001888 2.8e-35 152.5 167 52.1
A02p16620 Brassica napus HOM05D008070 ORTHO05D001888 8.1e-35 151.0 167 51.5
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 7.8e-30 134.4 148 49.3
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 1.7e-29 133.3 163 49.1
A07p13910 Brassica napus HOM05D001342 ORTHO05D001286 1.8e-26 123.2 107 68.2
C07p20460 Brassica napus HOM05D001342 ORTHO05D001286 5.3e-26 121.7 107 66.4
Aa31LG4G10410 Aethionema arabicum HOM05D008070 ORTHO05D001888 1.4e-23 113.6 165 44.8
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 1.0e-21 107.5 141 44.0
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 1.8e-21 106.7 151 40.4
BcaB05g24587 Brassica carinata HOM05D008070 ORTHO05D001888 6.7e-21 104.8 106 50.9
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 3.3e-20 102.4 166 40.4
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 1.6e-19 100.1 165 40.6
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 4.8e-19 98.6 165 41.8
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 1.1e-18 97.4 162 38.9
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 2.0e-17 93.2 163 39.9
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 2.0e-17 93.2 163 39.9
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 2.0e-17 93.2 148 39.9
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 3.4e-17 92.4 160 38.8
TWI75G1444 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 4.5e-17 92.0 161 38.5
Aa31LG2G9780 Aethionema arabicum HOM05D009121 ORTHO05D001888 9.9e-17 90.9 152 36.8
Sed0022116 Sechium edule HOM05D008070 ORTHO05D001888 9.9e-17 90.9 157 33.8
Sed0024894 Sechium edule HOM05D008070 ORTHO05D001888 3.8e-16 89.0 154 37.0
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 4.9e-16 88.6 159 37.1
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 8.4e-16 87.8 158 36.1
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 1.1e-15 87.4 160 36.9
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 2.4e-15 86.3 157 38.2
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 5.5e-15 85.1 133 39.8
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 7.1e-15 84.7 161 36.0
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 1.6e-14 83.6 150 40.0
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 3.5e-14 82.4 153 35.9
THA.LOC104819351 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 4.6e-14 82.0 154 32.5
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 6.0e-14 81.6 177 37.9
Carub.0001s1032 Capsella rubella HOM05D009121 ORTHO05D001888 1.8e-13 80.1 148 33.8
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 5.1e-13 78.6 170 34.1
AT1G10770 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 1.1e-12 77.4 149 32.9
CARHR010990 Cardamine hirsuta HOM05D009121 ORTHO05D001888 1.5e-12 77.0 149 31.5
BolC5t29657H Brassica oleracea HOM05D009121 ORTHO05D001888 4.3e-12 75.5 150 32.7
BcaC07g38628 Brassica carinata HOM05D009121 ORTHO05D001888 5.6e-12 75.1 151 33.1
C05p09130 Brassica napus HOM05D009121 ORTHO05D001888 5.6e-12 75.1 150 32.7
C08p48520 Brassica napus HOM05D009121 ORTHO05D001888 7.4e-12 74.7 150 34.0
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 7.4e-12 74.7 149 34.2
BolC8t52391H Brassica oleracea HOM05D009121 ORTHO05D001888 9.6e-12 74.3 150 34.0
A09p64670 Brassica napus HOM05D009121 ORTHO05D001888 1.3e-11 73.9 150 34.0
BraA09t41825Z Brassica rapa HOM05D009121 ORTHO05D001888 1.3e-11 73.9 150 34.0
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 1.3e-11 73.9 161 32.3
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 1.6e-11 73.6 145 34.5
BcaC05g24955 Brassica carinata HOM05D009121 ORTHO05D001888 2.1e-11 73.2 150 32.0
THA.LOC104809586 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 2.1e-11 73.2 162 31.5
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 2.1e-11 73.2 161 31.7
AL2G15820 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 2.8e-11 72.8 162 31.5
BcaB08g37374 Brassica carinata HOM05D009121 ORTHO05D001888 3.7e-11 72.4 151 33.1
AL1G21700 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 4.8e-11 72.0 149 31.5
A06p07570 Brassica napus HOM05D009121 ORTHO05D001888 6.2e-11 71.6 150 32.0
BraA06t23959Z Brassica rapa HOM05D009121 ORTHO05D001888 6.2e-11 71.6 150 32.0
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 8.1e-11 71.2 151 32.5
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 1.1e-10 70.9 138 32.6
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 1.1e-10 70.9 165 34.5
Thhalv10024081m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 1.4e-10 70.5 158 33.5
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 1.4e-10 70.5 152 34.2
MELO3C011973.2 Cucumis melo HOM05D008070 ORTHO05D001888 1.8e-10 70.1 138 34.1
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 1.8e-10 70.1 155 31.6
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 2.4e-10 69.7 153 32.0
Carub.0002s0459 Capsella rubella HOM05D009121 ORTHO05D001888 3.1e-10 69.3 149 31.5
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 5.3e-10 68.6 159 30.8
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 5.3e-10 68.6 159 30.8
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 5.3e-10 68.6 157 30.6
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 6.9e-10 68.2 159 30.8
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 6.9e-10 68.2 159 30.8
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 6.9e-10 68.2 159 30.8
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 9.0e-10 67.8 138 31.9
Sed0000802 Sechium edule HOM05D008070 ORTHO05D001888 1.2e-09 67.4 129 34.9
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 2.0e-09 66.6 138 31.9
CARHR051730 Cardamine hirsuta HOM05D009121 ORTHO05D001888 3.4e-09 65.9 158 30.4
CDE02G2547 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 4.5e-09 65.5 142 29.6
QL04p082607 Quercus lobata HOM05D010056 ORTHO05D001888 7.6e-09 64.7 160 31.9
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 1.3e-08 63.9 139 30.9
MBI10_g44381_MAGBIO Magnolia biondii HOM05D008070 ORTHO05D001888 1.3e-08 63.9 171 29.2
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 1.7e-08 63.5 156 29.5
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 2.2e-08 63.2 138 30.4
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 2.2e-08 63.2 139 33.1
Rhsim02G0004500 Rhododendron simsii HOM05D005742 ORTHO05D001888 2.2e-08 63.2 148 30.4
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 2.9e-08 62.8 149 28.9
QL06p011856 Quercus lobata HOM05D005742 ORTHO05D001888 2.9e-08 62.8 145 33.8
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 2.9e-08 62.8 143 31.5
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 3.8e-08 62.4 154 30.5
DCAR_026529 Daucus carota HOM05D009745 ORTHO05D011350 4.9e-08 62.0 137 32.1
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 8.4e-08 61.2 149 28.2
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 8.4e-08 61.2 141 31.2
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 1.4e-07 60.5 139 32.4
Medtr2g034220 Medicago truncatula HOM05D005742 ORTHO05D001888 1.4e-07 60.5 147 26.5
PSO478G3987 Papaver somniferum HOM05D020914 ORTHO05D001888 1.9e-07 60.1 135 28.9
PGSC0003DMG400002898 Solanum tuberosum HOM05D000281 ORTHO05D007047 2.5e-07 59.7 147 31.3
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 3.2e-07 59.3 142 30.3
CDE06G2294 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 7.1e-07 58.2 146 32.2
Gohir.D02G058775 Gossypium hirsutum HOM05D005742 ORTHO05D001888 7.1e-07 58.2 110 32.7
Gorai.005G066500 Gossypium raimondii HOM05D005742 ORTHO05D001888 7.1e-07 58.2 110 32.7
CsaV3_4G001290 Cucumis sativus L. HOM05D005742 ORTHO05D001888 9.3e-07 57.8 159 28.9
Gohir.A02G054001 Gossypium hirsutum HOM05D005742 ORTHO05D001888 1.2e-06 57.4 130 30.8
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 1.6e-06 57.0 139 30.9
CSS0018184 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 2.1e-06 56.6 173 28.9
CSS0026509 Camellia sinensis var. sinensis HOM05D005742 ORTHO05D001888 2.1e-06 56.6 173 28.9
Oeu012697.1 Olea europaea HOM05D009745 ORTHO05D011350 2.1e-06 56.6 162 32.1
Ah.04g157100 Amaranthus hybridus HOM05D005742 ORTHO05D001888 2.7e-06 56.2 144 29.9
Cpa.g.sc9.68 Carica papaya HOM05D005742 ORTHO05D001888 2.7e-06 56.2 145 28.3
ClCG10G011490 Citrullus lanatus HOM05D005742 ORTHO05D001888 2.7e-06 56.2 154 27.3
PSO017G3787 Papaver somniferum HOM05D020914 ORTHO05D023578 2.7e-06 56.2 135 28.1
vmacro15186 Vaccinium macrocarpon HOM05D005742 ORTHO05D001888 2.7e-06 56.2 143 28.0
MELO3C017910.2 Cucumis melo HOM05D005742 ORTHO05D001888 3.5e-06 55.8 170 28.2
MD03G1299200 Malus domestica HOM05D005742 ORTHO05D001888 3.5e-06 55.8 179 28.5
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 3.5e-06 55.8 143 30.1
CDE07G0112 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 4.6e-06 55.5 146 31.5
QL04p082804 Quercus lobata HOM05D010056 ORTHO05D001888 6.0e-06 55.1 153 30.1
CAN.G816.17 Capsicum annuum HOM05D000281 ORTHO05D007047 7.9e-06 54.7 143 31.5
Rhsim12G0042100 Rhododendron simsii HOM05D009745 ORTHO05D011350 7.9e-06 54.7 171 28.1


User provided reference genes

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