Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26208 Brassica carinata HOM05D007426 ORTHO05D009167 1.4e-174 617.5 573 100.0
BolC5t30917H Brassica oleracea HOM05D007426 ORTHO05D009167 6.4e-172 608.6 573 99.0
C05p22170 Brassica napus HOM05D007426 ORTHO05D009167 1.0e-169 601.3 573 98.6
A09p41750 Brassica napus HOM05D007426 ORTHO05D009167 2.0e-133 480.7 573 85.3
BraA09t39664Z Brassica rapa HOM05D007426 ORTHO05D009167 1.3e-124 451.4 579 77.4
A01p19900 Brassica napus HOM05D007426 ORTHO05D009167 3.3e-120 436.8 431 81.2
Thhalv10006897m.g Eutrema salsugineum HOM05D007426 ORTHO05D009167 1.2e-117 428.3 582 80.6
BcaB07g32294 Brassica carinata HOM05D007426 ORTHO05D009167 8.8e-113 412.1 586 83.4
Sp1g20420 Schrenkiella parvula HOM05D007426 ORTHO05D009167 1.1e-107 395.2 585 75.9
AL1G36520 Arabidopsis lyrata HOM05D007426 ORTHO05D009167 3.6e-66 257.3 582 68.2
Carub.0001s2246 Capsella rubella HOM05D007426 ORTHO05D009167 4.7e-66 256.9 585 70.3
CARHR023340 Cardamine hirsuta HOM05D007426 ORTHO05D009167 1.5e-64 251.9 582 71.0
AT1G22960 Arabidopsis thaliana HOM05D007426 ORTHO05D009167 1.3e-63 248.8 585 71.1
Aa31LG7G6970 Aethionema arabicum HOM05D007426 ORTHO05D009167 2.1e-50 204.9 218 55.0
BcaB03g11918 Brassica carinata HOM05D007426 ORTHO05D009167 2.4e-49 201.4 573 47.3
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 7.1e-46 189.9 271 40.2
Eucgr.G00774 Eucalyptus grandis HOM05D007426 ORTHO05D009167 9.2e-46 189.5 223 44.8
TAR629G2850 Trochodendron aralioides HOM05D007426 ORTHO05D009167 7.8e-45 186.4 251 42.2
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 2.3e-44 184.9 276 41.7
MD13G1032800 Malus domestica HOM05D007426 ORTHO05D009167 3.9e-44 184.1 205 48.8
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 5.1e-44 183.7 206 48.1
THA.LOC104821759 Tarenaya hassleriana HOM05D007426 ORTHO05D009167 6.6e-44 183.3 231 48.5
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 1.5e-43 182.2 268 42.2
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 1.8e-41 175.3 241 44.8
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 2.0e-40 171.8 272 37.1
Manes.06G063200 Manihot esculenta HOM05D007426 ORTHO05D009167 3.2e-38 164.5 189 45.5
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 4.2e-38 164.1 186 46.2
Cpa.g.sc65.89 Carica papaya HOM05D007426 ORTHO05D009167 7.1e-38 163.3 168 52.4
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 9.3e-38 162.9 208 43.3
QL01p003061 Quercus lobata HOM05D007426 ORTHO05D009167 3.0e-36 157.9 184 45.7
Atru.chr11.331 Acer truncatum HOM05D007426 ORTHO05D009167 8.7e-36 156.4 184 43.5
MELO3C012287.2 Cucumis melo HOM05D007426 ORTHO05D009167 8.7e-36 156.4 229 41.5
CANSAT01G1275 Cannabis sativa HOM05D007426 ORTHO05D009167 1.1e-35 156.0 212 41.5
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 1.1e-35 156.0 191 42.9
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 1.1e-35 156.0 190 41.1
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 1.5e-35 155.6 190 41.1
CiPaw.05G245100 Carya illinoinensis HOM05D007426 ORTHO05D009167 1.9e-35 155.2 171 49.7
Nn3g17999 Nelumbo nucifera HOM05D007426 ORTHO05D009167 2.5e-35 154.8 188 44.7
Aqoxy3G03989 Aquilegia oxysepala HOM05D007426 ORTHO05D009167 4.3e-35 154.1 180 42.8
Ciclev10017504m.g Citrus clementina HOM05D007426 ORTHO05D009167 5.6e-35 153.7 181 44.8
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 5.6e-35 153.7 190 43.7
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 9.6e-35 152.9 190 40.5
arahy.Tifrunner.gnm1.ann1.A3A4LS Arachis hypogaea HOM05D007426 ORTHO05D009167 2.8e-34 151.4 249 40.2
RcHm_v2.0_Chr4g0434041 Rosa chinensis HOM05D007426 ORTHO05D009167 2.8e-34 151.4 215 40.0
Dinv04907 Davidia involucrata HOM05D007426 ORTHO05D009167 3.6e-34 151.0 177 45.8
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 3.6e-34 151.0 190 42.6
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 4.8e-34 150.6 190 42.6
GSVIVG01011807001 Vitis vinifera HOM05D000798 ORTHO05D000659 1.1e-33 149.4 215 41.9
C05p22100 Brassica napus HOM05D007426 ORTHO05D009167 2.4e-33 148.3 193 98.4
Lj3A877T95 Lonicera japonica HOM05D007426 ORTHO05D009167 4.0e-33 147.5 202 43.1
ClCG04G001050 Citrullus lanatus HOM05D007426 ORTHO05D009167 6.9e-33 146.7 220 41.8
CsaV3_5G034750 Cucumis sativus L. HOM05D007426 ORTHO05D009167 1.5e-32 145.6 227 39.6
SGA_v2.0_scaffold376G50296 Striga asiatica HOM05D007426 ORTHO05D009167 5.8e-32 143.7 189 42.9
Duzib248G0356 Durio zibethinus HOM05D007426 ORTHO05D009167 7.6e-32 143.3 217 41.9
Sc11g0003960 Simmondsia chinensis HOM05D007426 ORTHO05D009167 7.6e-32 143.3 188 41.0
FAN12G1804 Fragaria x ananassa HOM05D007426 ORTHO05D009167 9.9e-32 142.9 224 38.4
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 9.9e-32 142.9 188 42.6
Medtr1g031720 Medicago truncatula HOM05D007426 ORTHO05D009167 1.3e-31 142.5 181 40.9
FAN12G0928 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.7e-31 142.1 224 38.4
Nitab4.5_0003886g0020 Nicotiana tabacum HOM05D007426 ORTHO05D009167 6.4e-31 140.2 178 40.4
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 1.1e-30 139.4 215 38.6
TWI79G0655 Tripterygium wilfordii HOM05D007426 ORTHO05D009167 1.4e-30 139.0 206 41.7
MSTRG.13563 Avicennia marina HOM05D007426 ORTHO05D009167 1.9e-30 138.7 179 41.9
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 5.4e-30 137.1 183 39.3
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 1.6e-29 135.6 181 43.6
Haze_00680 Corylus avellana HOM05D007426 ORTHO05D009167 4.6e-29 134.0 170 44.7
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 7.9e-29 133.3 188 39.4
Ca_12586_v3 Cicer arietinum L. HOM05D007426 ORTHO05D009167 7.9e-29 133.3 158 44.9
Lsat_1_v5_gn_4_15701 Lactuca sativa HOM05D007426 ORTHO05D009167 7.9e-29 133.3 201 37.3
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 6.7e-28 130.2 215 34.0
Sed0007337 Sechium edule HOM05D007426 ORTHO05D009167 7.4e-27 126.7 211 38.4
Cc11_g09290 Coffea canephora HOM05D007426 ORTHO05D009167 1.6e-26 125.6 147 42.9
vmacro10360 Vaccinium macrocarpon HOM05D007426 ORTHO05D009167 2.1e-26 125.2 226 35.4
arahy.Tifrunner.gnm1.ann1.5H8JFW Arachis hypogaea HOM05D003289 ORTHO05D009167 2.8e-26 124.8 185 41.6
SalBow8G0581 Salvia bowleyana HOM05D007426 ORTHO05D009167 6.2e-26 123.6 183 37.7
Nitab4.5_0000350g0090 Nicotiana tabacum HOM05D007426 ORTHO05D009167 8.1e-26 123.2 159 39.0
Lalb_Chr10g0096341 Lupinus albus HOM05D007426 ORTHO05D009167 1.8e-25 122.1 138 45.7
Psat6g044600 Pisum sativum HOM05D007426 ORTHO05D009167 4.0e-25 120.9 154 40.9
Hma1.2p1_0882F.1_g232200 Hydrangea macrophylla HOM05D007426 ORTHO05D009167 5.8e-24 117.1 167 40.1
Actinidia34749 Actinidia chinensis HOM05D007426 ORTHO05D009167 4.9e-23 114.0 211 37.0
CSS0028756 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 6.4e-23 113.6 128 45.3
Migut.E00390 Erythranthe guttata HOM05D007426 ORTHO05D009167 7.9e-21 106.7 165 35.2
Lj2g0001206 Lotus japonicus HOM05D007426 ORTHO05D009167 5.6e-19 100.5 148 39.9
Oeu048376.1 Olea europaea HOM05D007426 ORTHO05D009167 9.6e-19 99.8 210 33.3
FAN07G1506 Fragaria x ananassa HOM05D007426 ORTHO05D009167 1.2e-16 92.8 100 48.0
BcaC05g26202 Brassica carinata HOM05D007426 ORTHO05D009167 2.6e-16 91.7 44 95.5
BolC5t30906H Brassica oleracea HOM05D007426 ORTHO05D009167 2.6e-16 91.7 44 95.5
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 2.9e-15 88.2 97 48.5
FAN17G2923 Fragaria x ananassa HOM05D007426 ORTHO05D009167 9.3e-14 83.2 134 38.1
ATR0579G149 Amborella trichopoda HOM05D007426 ORTHO05D009167 2.7e-13 81.6 140 32.9
TPR.G36966 Trifolium pratense HOM05D007426 ORTHO05D009167 3.9e-12 77.8 150 34.0
Os12g0152600 Oryza sativa ssp. japonica HOM05D025020 ORTHO05D009167 3.3e-11 74.7 190 32.6
FvH4_4g26410 Fragaria vesca HOM05D007426 ORTHO05D009167 2.2e-10 72.0 106 37.7
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 2.8e-10 71.6 188 27.1
Zm00001eb406750 Zea mays HOM05D025020 ORTHO05D009167 3.7e-10 71.2 190 31.6
Oeu048390.1 Olea europaea HOM05D000798 ORTHO05D000659 4.8e-10 70.9 199 25.1
Cfa015816 Carpinus fangiana HOM05D007426 ORTHO05D009167 6.3e-10 70.5 74 48.6
A09p41780 Brassica napus HOM05D007426 ORTHO05D009167 4.1e-09 67.8 41 85.4
ECA246G4229 Erigeron canadensis HOM05D000587 ORTHO05D009114 4.1e-09 67.8 173 28.9
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 5.3e-09 67.4 192 25.5
BolC5t29545H Brassica oleracea HOM05D006888 ORTHO05D008371 5.3e-09 67.4 227 26.0
Zm00001eb164150 Zea mays HOM05D025020 ORTHO05D009167 9.0e-09 66.6 192 31.8
C05p07930 Brassica napus HOM05D006888 ORTHO05D008371 1.2e-08 66.2 227 25.6
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 1.2e-08 66.2 223 26.5
SEGI_36761 Sequoiadendron giganteum HOM05D007426 ORTHO05D009167 1.2e-08 66.2 147 29.3
Zm00001eb118640 Zea mays HOM05D025020 ORTHO05D009167 3.4e-08 64.7 188 31.9
BcaC05g24842 Brassica carinata HOM05D006888 ORTHO05D008371 5.9e-08 63.9 222 24.8
HanXRQChr05g0162401 Helianthus annuus HOM05D007390 ORTHO05D009114 7.7e-08 63.5 171 28.7
MD10G1084800 Malus domestica HOM05D007675 ORTHO05D009699 1.0e-07 63.2 245 24.9
Peaxi162Scf00205g01111 Petunia axillaris HOM05D007426 ORTHO05D009167 1.0e-07 63.2 61 49.2
Lsat_1_v5_gn_6_101541 Lactuca sativa HOM05D007390 ORTHO05D009114 1.7e-07 62.4 174 29.9
C07p33010 Brassica napus HOM05D007496 ORTHO05D009479 2.2e-07 62.0 216 25.5
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 2.2e-07 62.0 177 28.8
Sp1g08450 Schrenkiella parvula HOM05D006888 ORTHO05D008371 2.2e-07 62.0 224 23.7
Prupe.8G107700 Prunus persica HOM05D007675 ORTHO05D009699 2.9e-07 61.6 249 22.9
BcaC06g31248 Brassica carinata HOM05D007496 ORTHO05D009479 3.8e-07 61.2 215 23.7
BcaC06g34078 Brassica carinata HOM05D007496 ORTHO05D009479 5.0e-07 60.8 216 25.0
BolC7t43809H Brassica oleracea HOM05D007496 ORTHO05D009479 5.0e-07 60.8 216 25.0
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 5.0e-07 60.8 179 27.4
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 5.0e-07 60.8 221 25.8
Cpa.g.sc62.93 Carica papaya HOM05D007675 ORTHO05D009699 8.5e-07 60.1 246 25.2
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 8.5e-07 60.1 192 26.6
Carub.0001s0920 Capsella rubella HOM05D006888 ORTHO05D008371 1.1e-06 59.7 196 22.4
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 1.1e-06 59.7 228 24.1
AL1G20420 Arabidopsis lyrata HOM05D006888 ORTHO05D008371 1.4e-06 59.3 235 23.4
Zm00001eb197020 Zea mays HOM05D025020 ORTHO05D009167 1.4e-06 59.3 191 28.3
MELO3C025502.2 Cucumis melo HOM05D007763 ORTHO05D009537 2.5e-06 58.5 187 25.1
ATR1076G001 Amborella trichopoda HOM05D007426 ORTHO05D009167 3.2e-06 58.2 59 47.5
A06p43780 Brassica napus HOM05D007496 ORTHO05D009479 3.2e-06 58.2 215 23.7
Sabra04G0011500 Salix brachista HOM05D007956 ORTHO05D010152 3.2e-06 58.2 174 23.0
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 5.5e-06 57.4 182 28.0
EL10Ac4g09424 Beta vulgaris HOM05D006888 ORTHO05D008371 7.2e-06 57.0 190 22.6
ATR0829G190 Amborella trichopoda HOM05D007291 ORTHO05D009038 9.4e-06 56.6 175 21.7
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 9.4e-06 56.6 184 27.2
Lj5P203T17 Lonicera japonica HOM05D007675 ORTHO05D009699 9.4e-06 56.6 237 23.6
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 9.4e-06 56.6 165 25.5


User provided reference genes

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