Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26138 Brassica carinata HOM05D007703 ORTHO05D009731 7.6e-36 153.3 77 100.0
C05p21240 Brassica napus HOM05D007703 ORTHO05D009731 7.6e-36 153.3 77 100.0
BolC5t30820H Brassica oleracea HOM05D007703 ORTHO05D009731 7.6e-36 153.3 77 100.0
BraA09t39737Z Brassica rapa HOM05D007703 ORTHO05D009731 1.1e-31 139.4 79 93.7
BcaB07g32233 Brassica carinata HOM05D007703 ORTHO05D009731 1.5e-31 139.0 78 92.3
A09p42620 Brassica napus HOM05D007703 ORTHO05D009731 4.3e-31 137.5 79 92.4
Thhalv10009245m.g Eutrema salsugineum HOM05D007703 ORTHO05D009731 2.4e-29 131.7 75 84.0
Sp1g19640 Schrenkiella parvula HOM05D007703 ORTHO05D009731 5.3e-29 130.6 75 85.3
CARHR022490 Cardamine hirsuta HOM05D007703 ORTHO05D009731 1.4e-26 122.5 75 78.7
AT1G22140 Arabidopsis thaliana HOM05D007703 ORTHO05D009731 3.0e-24 114.8 75 76.0
AL1G35580 Arabidopsis lyrata HOM05D007703 ORTHO05D009731 3.9e-24 114.4 75 74.7
Carub.0001s2169 Capsella rubella HOM05D007703 ORTHO05D009731 1.5e-23 112.5 75 74.7
Aa31LG7G6100 Aethionema arabicum HOM05D007703 ORTHO05D009731 3.7e-22 107.8 74 71.6
Gohir.D06G040000 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.2e-20 102.8 74 67.6
Gorai.010G044500 Gossypium raimondii HOM05D007703 ORTHO05D009731 1.2e-20 102.8 74 67.6
Gohir.A06G038300 Gossypium hirsutum HOM05D007703 ORTHO05D009731 1.5e-20 102.4 74 68.9
COL.COLO4_16476 Corchorus olitorius HOM05D007703 ORTHO05D009731 2.6e-20 101.7 74 71.6
Duzib116G0261 Durio zibethinus HOM05D007703 ORTHO05D009731 1.3e-19 99.4 74 68.9
Atru.chr13.1271 Acer truncatum HOM05D007703 ORTHO05D009731 4.2e-18 94.4 74 62.2
TWI56G0976 Tripterygium wilfordii HOM05D007703 ORTHO05D009731 4.2e-18 94.4 74 62.2
Ciclev10003047m.g Citrus clementina HOM05D007703 ORTHO05D009731 5.5e-18 94.0 75 62.7
Psat0s3920g0040 Pisum sativum HOM05D007703 ORTHO05D009731 5.5e-18 94.0 81 60.5
Potri.005G167200 Populus trichocarpa HOM05D007703 ORTHO05D009731 5.5e-18 94.0 73 65.8
QL12p035855 Quercus lobata HOM05D007703 ORTHO05D009731 5.5e-18 94.0 78 62.8
Thecc.08G112500 Theobroma cacao HOM05D007703 ORTHO05D009731 5.5e-18 94.0 74 66.2
Eucgr.F00482 Eucalyptus grandis HOM05D007703 ORTHO05D009731 7.2e-18 93.6 74 64.9
CiPaw.05G232600 Carya illinoinensis HOM05D007703 ORTHO05D009731 9.3e-18 93.2 75 62.7
GSVIVG01008983001 Vitis vinifera HOM05D007703 ORTHO05D009731 9.3e-18 93.2 75 62.7
TPR.G1060 Trifolium pratense HOM05D007703 ORTHO05D009731 2.7e-17 91.7 80 58.8
Manes.02G156200 Manihot esculenta HOM05D007703 ORTHO05D009731 3.6e-17 91.3 75 62.7
Medtr5g061840 Medicago truncatula HOM05D007703 ORTHO05D009731 3.6e-17 91.3 77 59.7
Cpa.g.sc66.97 Carica papaya HOM05D007703 ORTHO05D009731 4.6e-17 90.9 74 58.1
PGR042G2694 Punica granatum HOM05D007703 ORTHO05D009731 6.1e-17 90.5 74 62.2
arahy.Tifrunner.gnm1.ann1.0YA8SQ Arachis hypogaea HOM05D007703 ORTHO05D009731 7.9e-17 90.1 59 71.2
arahy.Tifrunner.gnm1.ann1.DJB4SG Arachis hypogaea HOM05D007703 ORTHO05D009731 7.9e-17 90.1 79 59.5
CsaV3_5G023730 Cucumis sativus L. HOM05D007703 ORTHO05D009731 1.3e-16 89.4 78 60.3
Hma1.2p1_0120F.1_g057000 Hydrangea macrophylla HOM05D007703 ORTHO05D009731 1.3e-16 89.4 54 77.8
RcHm_v2.0_Chr7g0240051 Rosa chinensis HOM05D007703 ORTHO05D009731 1.8e-16 89.0 74 59.5
Sabra05G0127000 Salix brachista HOM05D007703 ORTHO05D009731 2.3e-16 88.6 65 64.6
Sed0022194 Sechium edule HOM05D007703 ORTHO05D009731 2.3e-16 88.6 74 60.8
Aqoxy6G00561 Aquilegia oxysepala HOM05D007703 ORTHO05D009731 3.0e-16 88.2 77 59.7
FvH4_5g38090 Fragaria vesca HOM05D007703 ORTHO05D009731 3.0e-16 88.2 74 60.8
AUR62022343 Chenopodium quinoa HOM05D007703 ORTHO05D009731 3.9e-16 87.8 73 58.9
Ca_05260_v3 Cicer arietinum L. HOM05D007703 ORTHO05D009731 3.9e-16 87.8 55 72.7
Lj1g0023708 Lotus japonicus HOM05D007703 ORTHO05D009731 3.9e-16 87.8 55 72.7
MELO3C022803.2 Cucumis melo HOM05D007703 ORTHO05D009731 5.1e-16 87.4 77 59.7
Prupe.1G511400 Prunus persica HOM05D007703 ORTHO05D009731 5.1e-16 87.4 72 59.7
CANSAT25G3270 Cannabis sativa HOM05D007703 ORTHO05D009731 6.7e-16 87.0 80 53.8
AUR62034365 Chenopodium quinoa HOM05D007703 ORTHO05D009731 6.7e-16 87.0 74 58.1
Glyma.13G087000 Glycine max HOM05D007703 ORTHO05D009731 6.7e-16 87.0 75 57.3
Phvul.008G170600 Phaseolus vulgaris HOM05D007703 ORTHO05D009731 8.7e-16 86.7 74 55.4
Sed0012287 Sechium edule HOM05D007703 ORTHO05D009731 8.7e-16 86.7 78 60.3
FAN13G1213 Fragaria x ananassa HOM05D007703 ORTHO05D009731 1.5e-15 85.9 74 59.5
Lalb_Chr04g0253231 Lupinus albus HOM05D007703 ORTHO05D009731 1.5e-15 85.9 72 55.6
Pp3c13_8980 Physcomitrium patens HOM05D007703 ORTHO05D009731 1.5e-15 85.9 75 58.7
Sopen12g029570 Solanum pennellii HOM05D007703 ORTHO05D009731 1.9e-15 85.5 72 59.7
FAN04G3187 Fragaria x ananassa HOM05D007703 ORTHO05D009731 2.5e-15 85.1 74 59.5
Nitab4.5_0002566g0010 Nicotiana tabacum HOM05D007703 ORTHO05D009731 2.5e-15 85.1 75 62.7
MSTRG.24946 Avicennia marina HOM05D007703 ORTHO05D009731 4.3e-15 84.3 56 69.6
Lsat_1_v5_gn_9_44720 Lactuca sativa HOM05D007703 ORTHO05D009731 4.3e-15 84.3 73 53.4
PSO133G0107 Papaver somniferum HOM05D007703 ORTHO05D009731 5.7e-15 84.0 56 66.1
SalBow7G3803 Salvia bowleyana HOM05D007703 ORTHO05D009731 7.4e-15 83.6 77 58.4
HPP92_019111 Vanilla planifolia HOM05D007703 ORTHO05D009731 7.4e-15 83.6 72 56.9
Hund26653 Selenicereus undatus HOM05D007703 ORTHO05D009731 9.7e-15 83.2 79 58.2
PGSC0003DMG400008548 Solanum tuberosum HOM05D007703 ORTHO05D009731 9.7e-15 83.2 55 67.3
Glyma.14G169200 Glycine max HOM05D007703 ORTHO05D009731 1.3e-14 82.8 75 56.0
Mapoly0023s0123 Marchantia polymorpha HOM05D007703 ORTHO05D009731 1.3e-14 82.8 74 56.8
Solyc12g056910.2 Solanum lycopersicum HOM05D007703 ORTHO05D009731 1.3e-14 82.8 72 58.3
ECA232G3100 Erigeron canadensis HOM05D007703 ORTHO05D009731 2.2e-14 82.0 70 57.1
HanXRQChr05g0144121 Helianthus annuus HOM05D007703 ORTHO05D009731 2.8e-14 81.6 61 62.3
Sc20g0003040 Simmondsia chinensis HOM05D007703 ORTHO05D009731 2.8e-14 81.6 75 54.7
Nitab4.5_0000425g0040 Nicotiana tabacum HOM05D007703 ORTHO05D009731 3.7e-14 81.3 73 58.9
SEGI_17524 Sequoiadendron giganteum HOM05D007703 ORTHO05D009731 4.8e-14 80.9 80 56.2
Nn1g05271 Nelumbo nucifera HOM05D007703 ORTHO05D009731 6.3e-14 80.5 75 54.7
TAR628G1160 Trochodendron aralioides HOM05D007703 ORTHO05D009731 6.3e-14 80.5 77 54.5
CAN.G144.17 Capsicum annuum HOM05D007703 ORTHO05D009731 1.1e-13 79.7 50 74.0
Peaxi162Scf00160g01521 Petunia axillaris HOM05D007703 ORTHO05D009731 1.4e-13 79.3 76 57.9
vmacro21226 Vaccinium macrocarpon HOM05D007703 ORTHO05D009731 1.4e-13 79.3 65 61.5
CDE10G0679 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 1.8e-13 79.0 74 55.4
Os03g0385301 Oryza sativa ssp. japonica HOM05D007703 ORTHO05D009731 4.1e-13 77.8 79 50.6
EL10Ac1g01693 Beta vulgaris HOM05D007703 ORTHO05D009731 5.3e-13 77.4 70 57.1
RcHm_v2.0_Chr2g0097791 Rosa chinensis HOM05D007703 ORTHO05D009731 6.9e-13 77.0 51 68.6
Zm00001eb018670 Zea mays HOM05D007703 ORTHO05D009731 6.9e-13 77.0 81 54.3
Cc10_g05880 Coffea canephora HOM05D007703 ORTHO05D009731 4.5e-12 74.3 55 65.5
ATR0564G384 Amborella trichopoda HOM05D007703 ORTHO05D009731 1.0e-11 73.2 55 63.6
ClCG03G008950 Citrullus lanatus HOM05D007703 ORTHO05D009731 1.3e-11 72.8 118 41.5
SGA_v2.0_scaffold48G18018 Striga asiatica HOM05D007703 ORTHO05D009731 2.5e-10 68.6 98 42.9
Ah.05g168540 Amaranthus hybridus HOM05D007703 ORTHO05D009731 2.7e-09 65.1 42 73.8
Haze_00567 Corylus avellana HOM05D007703 ORTHO05D009731 6.7e-08 60.5 116 37.1
CDE10G0176 Ceratophyllum demersum HOM05D007703 ORTHO05D009731 1.5e-07 59.3 37 73.0
CSS0046153 Camellia sinensis var. sinensis HOM05D007703 ORTHO05D009731 4.8e-06 54.3 36 69.4


User provided reference genes

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