Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 1.2e-121 439.9 226 100.0
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 1.7e-99 366.3 226 87.6
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 2.5e-87 325.9 197 87.3
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 4.9e-83 311.6 224 74.6
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 6.4e-83 311.2 233 72.1
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 2.4e-82 309.3 229 73.4
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 2.7e-81 305.8 228 73.7
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 5.1e-80 301.6 226 73.0
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 2.0e-76 289.7 190 85.8
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 9.0e-69 264.2 224 67.4
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 3.8e-51 205.7 228 56.6
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 8.7e-48 194.5 224 53.1
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 8.5e-43 177.9 233 43.8
BolC5t30769H Brassica oleracea HOM05D005772 ORTHO05D006468 6.7e-40 168.3 226 50.4
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 3.3e-39 166.0 237 41.8
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 1.4e-37 160.6 236 41.1
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 1.8e-37 160.2 237 39.7
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 6.9e-37 158.3 238 40.3
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 3.4e-36 156.0 227 41.9
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.9e-35 152.9 243 40.7
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 6.5e-35 151.8 227 43.2
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 9.4e-34 147.9 231 42.4
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 2.7e-33 146.4 227 41.9
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 4.7e-33 145.6 231 41.1
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 1.8e-32 143.7 239 41.8
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 3.3e-31 139.4 241 40.2
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 7.4e-31 138.3 218 40.8
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 1.7e-30 137.1 247 38.9
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 7.0e-29 131.7 230 40.9
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 2.6e-28 129.8 233 37.8
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 5.9e-28 128.6 226 38.9
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 7.7e-28 128.3 255 33.7
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 1.9e-26 123.6 244 36.5
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 3.2e-26 122.9 246 36.6
BcaB03g14256 Brassica carinata HOM05D002121 ORTHO05D004000 4.2e-26 122.5 124 61.3
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 4.2e-26 122.5 237 37.6
BraA07t29240Z Brassica rapa HOM05D005772 ORTHO05D006468 9.4e-26 121.3 225 41.8
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 2.1e-25 120.2 243 37.0
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 2.7e-25 119.8 228 36.8
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 2.7e-25 119.8 232 36.6
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 3.6e-25 119.4 245 34.3
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 1.0e-24 117.9 242 32.6
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 3.0e-24 116.3 175 39.4
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 6.7e-24 115.2 239 36.8
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 1.1e-23 114.4 227 36.6
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 1.5e-23 114.0 236 39.4
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 1.5e-23 114.0 234 38.0
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 7.5e-23 111.7 226 37.6
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 1.3e-22 110.9 183 38.3
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 1.7e-22 110.5 282 30.5
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 2.2e-22 110.2 228 38.6
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 2.8e-22 109.8 176 39.8
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 6.3e-22 108.6 238 37.4
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 1.4e-21 107.5 188 34.6
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 5.3e-21 105.5 220 35.0
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 5.3e-21 105.5 234 35.0
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 7.0e-21 105.1 218 33.5
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 9.1e-21 104.8 234 34.6
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 3.5e-20 102.8 164 39.6
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 5.9e-20 102.1 170 40.0
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 3.8e-19 99.4 199 37.7
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 4.2e-18 95.9 223 34.5
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 3.6e-17 92.8 231 35.1
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.4e-16 90.9 148 35.1
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.4e-16 90.9 148 35.1
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.8e-16 90.5 142 35.9
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 2.3e-16 90.1 229 34.9
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 5.7e-15 85.5 225 32.4
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 7.5e-15 85.1 202 33.2
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 7.5e-15 85.1 158 33.5
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 4.8e-14 82.4 150 32.7
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 1.8e-13 80.5 213 31.0
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 1.8e-13 80.5 234 34.6
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 3.1e-13 79.7 161 32.9
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 5.4e-13 79.0 147 33.3
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 5.4e-13 79.0 157 33.8
BolC5t30910H Brassica oleracea HOM05D002121 ORTHO05D039495 9.1e-13 78.2 41 95.1
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 1.2e-12 77.8 145 33.1
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 2.0e-12 77.0 150 35.3
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 2.0e-12 77.0 189 32.3
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 2.0e-12 77.0 163 29.4
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 4.5e-12 75.9 171 35.7
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 7.7e-12 75.1 129 33.3
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 1.0e-11 74.7 158 31.6
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 1.7e-11 73.9 174 36.2
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 1.7e-11 73.9 103 35.9
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 2.2e-11 73.6 196 29.6
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 2.9e-11 73.2 234 35.0
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 3.8e-11 72.8 103 35.0
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 5.0e-11 72.4 169 30.8
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 1.1e-10 71.2 171 29.8
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.5e-10 70.9 103 33.0
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 3.2e-10 69.7 108 32.4
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 5.5e-10 68.9 169 32.0
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 7.2e-10 68.6 108 33.3
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 9.4e-10 68.2 158 30.4
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 2.1e-09 67.0 168 32.7
unitig_22.g6227 Utricularia gibba HOM05D005772 ORTHO05D006468 3.6e-09 66.2 59 49.2
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 4.7e-09 65.9 156 27.6
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.0e-08 64.7 169 29.6
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 1.0e-08 64.7 171 29.8
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 1.4e-08 64.3 173 27.7
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 1.8e-08 63.9 125 28.0
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 1.8e-08 63.9 103 32.0
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 4.0e-08 62.8 103 29.1
Sabra05G0136400 Salix brachista HOM05D005772 ORTHO05D006468 5.2e-08 62.4 177 33.3
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 8.8e-08 61.6 146 27.4
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 1.5e-07 60.8 103 30.1
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.5e-07 60.8 103 30.1
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 1.5e-07 60.8 103 30.1
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 1.5e-07 60.8 103 30.1
Nitab4.5_0003012g0080 Nicotiana tabacum HOM05D005772 ORTHO05D006468 2.6e-07 60.1 57 47.4
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 4.4e-07 59.3 164 26.2
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 4.4e-07 59.3 128 28.1
Rhsim06G0101700 Rhododendron simsii HOM05D005772 ORTHO05D006468 5.7e-07 58.9 165 33.9
Lsat_1_v5_gn_8_150021 Lactuca sativa HOM05D041600 ORTHO05D006468 9.8e-07 58.2 156 34.0
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 2.2e-06 57.0 219 25.1
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 2.8e-06 56.6 87 29.9
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 2.8e-06 56.6 168 27.4
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 6.3e-06 55.5 170 26.5


User provided reference genes

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