Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26083 Brassica carinata HOM05D006317 ORTHO05D007852 2.3e-17 91.3 50 100.0
BcaB07g32159 Brassica carinata HOM05D006317 ORTHO05D007852 1.0e-09 65.9 50 76.0
A06p17730 Brassica napus HOM05D006317 ORTHO05D007852 1.4e-09 65.5 50 76.0
Sp1g19190 Schrenkiella parvula HOM05D006317 ORTHO05D007852 1.8e-09 65.1 50 74.0
BolC5t30761H Brassica oleracea HOM05D006317 ORTHO05D007852 2.3e-09 64.7 59 69.5
BraA06t24865Z Brassica rapa HOM05D006317 ORTHO05D007852 2.3e-09 64.7 50 74.0
Thhalv10009123m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 5.1e-09 63.5 50 70.0
Aa31LG4G7370 Aethionema arabicum HOM05D006317 ORTHO05D007852 1.1e-08 62.4 50 70.0
A08p28870 Brassica napus HOM05D006317 ORTHO05D007852 1.5e-08 62.0 50 74.0
C08p20980 Brassica napus HOM05D006317 ORTHO05D007852 1.5e-08 62.0 50 74.0
BolC8t49735H Brassica oleracea HOM05D006317 ORTHO05D007852 1.5e-08 62.0 50 74.0
BraA08t34818Z Brassica rapa HOM05D006317 ORTHO05D007852 1.5e-08 62.0 50 74.0
CARHR070830 Cardamine hirsuta HOM05D006317 ORTHO05D007852 1.5e-08 62.0 50 68.0
BcaB03g14259 Brassica carinata HOM05D006317 ORTHO05D007852 2.6e-08 61.2 50 70.0
Carub.0002s2423 Capsella rubella HOM05D006317 ORTHO05D007852 3.3e-08 60.8 50 66.0
Thhalv10019323m.g Eutrema salsugineum HOM05D006317 ORTHO05D007852 7.4e-08 59.7 50 66.0
BcaC06g34898 Brassica carinata HOM05D006317 ORTHO05D007852 1.3e-07 58.9 49 71.4
A07p14980 Brassica napus HOM05D006317 ORTHO05D007852 1.3e-07 58.9 49 71.4
BolC7t42733H Brassica oleracea HOM05D006317 ORTHO05D007852 1.3e-07 58.9 49 71.4
BraA07t29244Z Brassica rapa HOM05D006317 ORTHO05D007852 1.3e-07 58.9 49 71.4
CiPaw.15G032500 Carya illinoinensis HOM05D006317 ORTHO05D007852 1.7e-07 58.5 40 77.5
AL2G37550 Arabidopsis lyrata HOM05D006317 ORTHO05D007852 2.2e-07 58.2 47 68.1
Sc10g0008060 Simmondsia chinensis HOM05D006317 ORTHO05D007852 2.8e-07 57.8 42 73.8
AT1G77350 Arabidopsis thaliana HOM05D006317 ORTHO05D007852 3.7e-07 57.4 47 66.0
C07p22030 Brassica napus HOM05D006317 ORTHO05D007852 3.7e-07 57.4 48 70.8
DCAR_018876 Daucus carota HOM05D006317 ORTHO05D007852 4.8e-07 57.0 49 65.3
THA.LOC104813677 Tarenaya hassleriana HOM05D006317 ORTHO05D007852 4.8e-07 57.0 50 66.0
Dinv27277 Davidia involucrata HOM05D006317 ORTHO05D007852 6.3e-07 56.6 40 75.0
Duzib041G0795 Durio zibethinus HOM05D006317 ORTHO05D007852 8.2e-07 56.2 42 71.4
Duzib116G0606 Durio zibethinus HOM05D006317 ORTHO05D007852 8.2e-07 56.2 42 71.4
Gohir.A05G237800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 8.2e-07 56.2 42 71.4
Gohir.D05G239800 Gossypium hirsutum HOM05D006317 ORTHO05D007852 8.2e-07 56.2 42 71.4
Gorai.009G248700 Gossypium raimondii HOM05D006317 ORTHO05D007852 8.2e-07 56.2 42 71.4
Lalb_Chr08g0241161 Lupinus albus HOM05D006317 ORTHO05D007852 8.2e-07 56.2 40 72.5
Phvul.009G129100 Phaseolus vulgaris HOM05D006317 ORTHO05D007852 8.2e-07 56.2 42 71.4
Sed0004620 Sechium edule HOM05D006317 ORTHO05D007852 8.2e-07 56.2 42 71.4
Thecc.08G132100 Theobroma cacao HOM05D006317 ORTHO05D007852 8.2e-07 56.2 42 71.4
TAR375G0871 Trochodendron aralioides HOM05D006317 ORTHO05D007852 8.2e-07 56.2 42 71.4
VMungo1309G0699 Vigna mungo HOM05D006317 ORTHO05D007852 8.2e-07 56.2 42 71.4
ClCG08G005990 Citrullus lanatus HOM05D006317 ORTHO05D007852 1.1e-06 55.8 42 71.4
Cfa018120 Carpinus fangiana HOM05D006317 ORTHO05D007852 1.4e-06 55.5 40 75.0
Atru.chr13.1550 Acer truncatum HOM05D006317 ORTHO05D007852 1.8e-06 55.1 42 69.0
COL.COLO4_05688 Corchorus olitorius HOM05D006317 ORTHO05D007852 1.8e-06 55.1 42 69.0
Eucgr.D00248 Eucalyptus grandis HOM05D006317 ORTHO05D007852 1.8e-06 55.1 40 75.0
Manes.02G167400 Manihot esculenta HOM05D006317 ORTHO05D007852 1.8e-06 55.1 42 69.0
Manes.18G081900 Manihot esculenta HOM05D006317 ORTHO05D007852 1.8e-06 55.1 42 69.0
PGR044G1554 Punica granatum HOM05D006317 ORTHO05D007852 1.8e-06 55.1 50 66.0
CSS0008085 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 2.4e-06 54.7 40 70.0
CSS0027136 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 2.4e-06 54.7 40 70.0
Glyma.04G246100 Glycine max HOM05D006317 ORTHO05D007852 2.4e-06 54.7 42 69.0
Glyma.06G116700 Glycine max HOM05D006317 ORTHO05D007852 2.4e-06 54.7 42 69.0
Hma1.2p1_0420F.1_g149670 Hydrangea macrophylla HOM05D006317 ORTHO05D007852 2.4e-06 54.7 49 65.3
Lj1g0010212 Lotus japonicus HOM05D006317 ORTHO05D007852 2.4e-06 54.7 40 72.5
QL09p032738 Quercus lobata HOM05D006317 ORTHO05D007852 2.4e-06 54.7 40 75.0
Rhsim11G0071000 Rhododendron simsii HOM05D006317 ORTHO05D007852 2.4e-06 54.7 40 70.0
CSS0006686 Camellia sinensis var. sinensis HOM05D006317 ORTHO05D007852 3.1e-06 54.3 49 61.2
Dinv14667 Davidia involucrata HOM05D006317 ORTHO05D007852 3.1e-06 54.3 40 75.0
Nn1g09356 Nelumbo nucifera HOM05D006317 ORTHO05D007852 3.1e-06 54.3 42 69.0
GSVIVG01036785001 Vitis vinifera HOM05D006317 ORTHO05D007852 3.1e-06 54.3 42 69.0
FvH4_2g27730 Fragaria vesca HOM05D006317 ORTHO05D007852 4.1e-06 53.9 40 70.0
FAN20G1754 Fragaria x ananassa HOM05D006317 ORTHO05D007852 4.1e-06 53.9 40 70.0
FAN24G3505 Fragaria x ananassa HOM05D006317 ORTHO05D007852 4.1e-06 53.9 40 70.0
Prupe.1G490600 Prunus persica HOM05D006317 ORTHO05D007852 4.1e-06 53.9 42 66.7
ATR1101G062 Amborella trichopoda HOM05D006317 ORTHO05D007852 5.3e-06 53.5 42 66.7
MELO3C010655.2 Cucumis melo HOM05D006317 ORTHO05D007852 5.3e-06 53.5 42 69.0
CsaV3_6G034090 Cucumis sativus L. HOM05D006317 ORTHO05D007852 5.3e-06 53.5 42 69.0
Lalb_Chr23g0271161 Lupinus albus HOM05D006317 ORTHO05D007852 5.3e-06 53.5 42 66.7
Cpa.g.sc64.145 Carica papaya HOM05D006317 ORTHO05D007852 7.0e-06 53.1 42 66.7
MBI03_g35425_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 7.0e-06 53.1 42 66.7
MBI06_g36652_MAGBIO Magnolia biondii HOM05D006317 ORTHO05D007852 7.0e-06 53.1 42 66.7
Medtr3g088525 Medicago truncatula HOM05D006317 ORTHO05D007852 9.1e-06 52.8 40 70.0
RcHm_v2.0_Chr6g0296581 Rosa chinensis HOM05D006317 ORTHO05D007852 9.1e-06 52.8 42 66.7
TWI32G0551 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 9.1e-06 52.8 42 66.7
TWI34G0863 Tripterygium wilfordii HOM05D006317 ORTHO05D007852 9.1e-06 52.8 42 66.7


User provided reference genes

Program Settings