Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26024 Brassica carinata HOM05D003652 ORTHO05D004190 3.1e-57 224.9 116 100.0
AT1G21170 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 5.0e-39 164.5 103 78.6
Sp1g18810 Schrenkiella parvula HOM05D003652 ORTHO05D004190 7.2e-38 160.6 104 76.9
Carub.0001s2061 Capsella rubella HOM05D003652 ORTHO05D004190 1.6e-37 159.5 101 80.2
AL1G34230 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 6.1e-37 157.5 104 77.9
Thhalv10006745m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 5.1e-36 154.5 102 77.5
CARHR021630 Cardamine hirsuta HOM05D003652 ORTHO05D004190 5.3e-33 144.4 101 73.3
Aa31LG7G5310 Aethionema arabicum HOM05D003652 ORTHO05D004190 1.9e-30 136.0 102 69.6
THA.LOC104812038 Tarenaya hassleriana HOM05D003652 ORTHO05D004190 1.9e-30 136.0 103 68.9
Potri.005G191500 Populus trichocarpa HOM05D003652 ORTHO05D004190 1.0e-28 130.2 107 63.6
Potri.002G068900 Populus trichocarpa HOM05D003652 ORTHO05D004190 6.7e-28 127.5 107 60.7
C05p19910 Brassica napus HOM05D003652 ORTHO05D004190 1.5e-27 126.3 64 98.4
BolC5t30688H Brassica oleracea HOM05D003652 ORTHO05D004190 1.5e-27 126.3 64 98.4
AUR62026715 Chenopodium quinoa HOM05D003652 ORTHO05D004190 2.0e-27 125.9 107 59.8
AUR62013575 Chenopodium quinoa HOM05D003652 ORTHO05D004190 3.3e-27 125.2 107 59.8
Atru.chr13.2145 Acer truncatum HOM05D003652 ORTHO05D004190 5.7e-27 124.4 107 60.7
QL02p033637 Quercus lobata HOM05D003652 ORTHO05D004190 1.3e-26 123.2 107 59.8
SGA_v2.0_scaffold19G08667 Striga asiatica HOM05D003652 ORTHO05D004190 1.3e-26 123.2 105 61.9
Actinidia10649 Actinidia chinensis HOM05D003652 ORTHO05D004190 1.7e-26 122.9 107 61.7
EL10Ac1g01536 Beta vulgaris HOM05D003652 ORTHO05D004190 1.7e-26 122.9 107 58.9
Sabra02G0054200 Salix brachista HOM05D003652 ORTHO05D004190 1.7e-26 122.9 107 58.9
Cfa013845 Carpinus fangiana HOM05D003652 ORTHO05D004190 2.2e-26 122.5 106 61.3
CiPaw.07G160100 Carya illinoinensis HOM05D003652 ORTHO05D004190 2.8e-26 122.1 107 58.9
Migut.N03225 Erythranthe guttata HOM05D003652 ORTHO05D004190 2.8e-26 122.1 107 59.8
Hma1.2p1_0105F.1_g050770 Hydrangea macrophylla HOM05D003652 ORTHO05D004190 2.8e-26 122.1 106 61.3
GSVIVG01034519001 Vitis vinifera HOM05D003652 ORTHO05D004190 3.7e-26 121.7 107 59.8
Aqoxy5G02100 Aquilegia oxysepala HOM05D003652 ORTHO05D004190 4.8e-26 121.3 107 59.8
SGA_v2.0_scaffold25G11172 Striga asiatica HOM05D003652 ORTHO05D004190 4.8e-26 121.3 105 59.0
Sabra05G0146300 Salix brachista HOM05D003652 ORTHO05D004190 6.3e-26 120.9 104 63.5
Sc02g0004140 Simmondsia chinensis HOM05D003652 ORTHO05D004190 8.2e-26 120.6 107 60.7
TWI34G0668 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 8.2e-26 120.6 107 58.9
MSTRG.22372 Avicennia marina HOM05D003652 ORTHO05D004190 1.1e-25 120.2 107 57.9
Ciclev10000108m.g Citrus clementina HOM05D003652 ORTHO05D004190 1.1e-25 120.2 107 58.9
Duzib116G0402 Durio zibethinus HOM05D003652 ORTHO05D004190 1.1e-25 120.2 104 61.5
Cc10_g14750 Coffea canephora HOM05D003652 ORTHO05D004190 1.4e-25 119.8 107 59.8
Glyma.10G217200 Glycine max HOM05D003652 ORTHO05D004190 1.4e-25 119.8 107 57.9
Lj5g0007913 Lotus japonicus HOM05D003652 ORTHO05D004190 1.4e-25 119.8 107 57.0
Glyma.20G174900 Glycine max HOM05D003652 ORTHO05D004190 1.8e-25 119.4 107 57.9
Medtr1g096550 Medicago truncatula HOM05D003652 ORTHO05D004190 1.8e-25 119.4 106 58.5
SalBow6G6910 Salvia bowleyana HOM05D003652 ORTHO05D004190 2.4e-25 119.0 107 58.9
Manes.02G178800 Manihot esculenta HOM05D003652 ORTHO05D004190 3.1e-25 118.6 107 60.7
Nitab4.5_0000140g0050 Nicotiana tabacum HOM05D003652 ORTHO05D004190 3.1e-25 118.6 107 58.9
TPR.G8817 Trifolium pratense HOM05D003652 ORTHO05D004190 3.1e-25 118.6 106 57.5
AL2G36970 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 4.1e-25 118.2 102 61.8
Rhsim10G0066500 Rhododendron simsii HOM05D003652 ORTHO05D004190 4.1e-25 118.2 107 59.8
vmacro18508 Vaccinium macrocarpon HOM05D003652 ORTHO05D004190 4.1e-25 118.2 107 58.9
Carub.0002s2373 Capsella rubella HOM05D003652 ORTHO05D004190 5.3e-25 117.9 101 62.4
CsaV3_7G024680 Cucumis sativus L. HOM05D003652 ORTHO05D004190 5.3e-25 117.9 105 59.0
Dinv25854 Davidia involucrata HOM05D003652 ORTHO05D004190 5.3e-25 117.9 102 61.8
Dinv41091 Davidia involucrata HOM05D003652 ORTHO05D004190 5.3e-25 117.9 107 59.8
Prupe.8G058700 Prunus persica HOM05D003652 ORTHO05D004190 5.3e-25 117.9 107 58.9
TWI60G1418 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 5.3e-25 117.9 107 57.0
TAR376G0660 Trochodendron aralioides HOM05D003652 ORTHO05D004190 5.3e-25 117.9 105 60.0
unitig_744.g24568 Utricularia gibba HOM05D003652 ORTHO05D004190 5.3e-25 117.9 107 62.6
VMungo0720G3010 Vigna mungo HOM05D003652 ORTHO05D004190 5.3e-25 117.9 107 54.2
A06p17210 Brassica napus HOM05D003652 ORTHO05D004190 7.0e-25 117.5 104 67.3
MELO3C024093.2 Cucumis melo HOM05D003652 ORTHO05D004190 7.0e-25 117.5 105 58.1
ClCG09G010020 Citrullus lanatus HOM05D003652 ORTHO05D004190 9.1e-25 117.1 105 58.1
Nn5g28722 Nelumbo nucifera HOM05D003652 ORTHO05D004190 9.1e-25 117.1 107 57.9
Rhsim08G0021800 Rhododendron simsii HOM05D003652 ORTHO05D004190 9.1e-25 117.1 107 59.8
AT1G76850 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 1.2e-24 116.7 102 61.8
CSS0021982 Camellia sinensis var. sinensis HOM05D003652 ORTHO05D004190 1.2e-24 116.7 107 59.8
Nitab4.5_0008106g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.2e-24 116.7 107 57.9
Oeu014495.2 Olea europaea HOM05D003652 ORTHO05D004190 2.0e-24 115.9 107 56.1
Ca_10620_v3 Cicer arietinum L. HOM05D003652 ORTHO05D004190 2.6e-24 115.5 106 55.7
Gohir.A02G064300 Gossypium hirsutum HOM05D003652 ORTHO05D004190 2.6e-24 115.5 104 60.6
Gohir.D02G070200 Gossypium hirsutum HOM05D003652 ORTHO05D004190 2.6e-24 115.5 104 60.6
Gorai.005G079300 Gossypium raimondii HOM05D003652 ORTHO05D004190 2.6e-24 115.5 104 60.6
PSO210G4735 Papaver somniferum HOM05D003652 ORTHO05D004190 2.6e-24 115.5 107 57.9
PSO238G0028 Papaver somniferum HOM05D003652 ORTHO05D004190 2.6e-24 115.5 107 57.9
PGSC0003DMG400024108 Solanum tuberosum HOM05D003652 ORTHO05D004190 2.6e-24 115.5 107 57.0
Haze_22519 Corylus avellana HOM05D003652 ORTHO05D004190 3.5e-24 115.2 125 53.6
Eucgr.F04242 Eucalyptus grandis HOM05D003652 ORTHO05D004190 4.5e-24 114.8 107 56.1
TAR628G0150 Trochodendron aralioides HOM05D003652 ORTHO05D004190 4.5e-24 114.8 107 56.1
CANSAT25G1176 Cannabis sativa HOM05D003652 ORTHO05D004190 5.9e-24 114.4 103 59.2
COL.COLO4_37835 Corchorus olitorius HOM05D003652 ORTHO05D004190 5.9e-24 114.4 104 59.6
Oeu011939.2 Olea europaea HOM05D003652 ORTHO05D004190 5.9e-24 114.4 107 59.8
Sed0009622 Sechium edule HOM05D003652 ORTHO05D004190 5.9e-24 114.4 105 57.1
Lj7C372G9 Lonicera japonica HOM05D003652 ORTHO05D004190 7.7e-24 114.0 103 59.2
Lalb_Chr21g0305741 Lupinus albus HOM05D003652 ORTHO05D004190 7.7e-24 114.0 107 56.1
Psat6g186720 Pisum sativum HOM05D003652 ORTHO05D004190 7.7e-24 114.0 106 56.6
Nitab4.5_0005705g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.3e-23 113.2 107 57.0
Phvul.007G088900 Phaseolus vulgaris HOM05D003652 ORTHO05D004190 1.7e-23 112.8 101 62.4
Hund26699 Selenicereus undatus HOM05D003652 ORTHO05D004190 1.7e-23 112.8 107 54.2
Solyc04g071350.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 1.7e-23 112.8 107 55.1
Sopen04g027310 Solanum pennellii HOM05D003652 ORTHO05D004190 1.7e-23 112.8 107 55.1
CAN.G268.10 Capsicum annuum HOM05D003652 ORTHO05D004190 2.9e-23 112.1 107 55.1
Aa31LG4G6890 Aethionema arabicum HOM05D003652 ORTHO05D004190 3.8e-23 111.7 104 58.7
Lsat_1_v5_gn_7_71861 Lactuca sativa HOM05D003652 ORTHO05D004190 3.8e-23 111.7 102 58.8
Peaxi162Scf01294g00125 Petunia axillaris HOM05D003652 ORTHO05D004190 3.8e-23 111.7 107 55.1
BcaC08g45509 Brassica carinata HOM05D003652 ORTHO05D004190 5.0e-23 111.3 102 57.8
C06p31780 Brassica napus HOM05D003652 ORTHO05D004190 5.0e-23 111.3 102 57.8
BolC6t38307H Brassica oleracea HOM05D003652 ORTHO05D004190 5.0e-23 111.3 102 57.8
MD07G1075500 Malus domestica HOM05D003652 ORTHO05D004190 5.0e-23 111.3 107 57.9
BcaB02g07077 Brassica carinata HOM05D003652 ORTHO05D004190 6.5e-23 110.9 102 56.9
A07p28340 Brassica napus HOM05D003652 ORTHO05D004190 6.5e-23 110.9 102 56.9
BraA07t30471Z Brassica rapa HOM05D003652 ORTHO05D004190 6.5e-23 110.9 102 56.9
Lalb_Chr06g0162011 Lupinus albus HOM05D003652 ORTHO05D004190 6.5e-23 110.9 107 55.1
PGR042G2936 Punica granatum HOM05D003652 ORTHO05D004190 6.5e-23 110.9 108 53.7
Sp5g31980 Schrenkiella parvula HOM05D003652 ORTHO05D004190 6.5e-23 110.9 102 57.8
HanXRQChr11g0339321 Helianthus annuus HOM05D003652 ORTHO05D004190 8.5e-23 110.5 101 58.4
Peaxi162Scf00765g00049 Petunia axillaris HOM05D003652 ORTHO05D004190 8.5e-23 110.5 107 54.2
RcHm_v2.0_Chr1g0332001 Rosa chinensis HOM05D003652 ORTHO05D004190 8.5e-23 110.5 104 58.7
Cpa.g.sc21.193 Carica papaya HOM05D003652 ORTHO05D004190 1.1e-22 110.2 104 57.7
Os04g0421900 Oryza sativa ssp. japonica HOM05D003652 ORTHO05D004190 1.5e-22 109.8 98 61.2
CARHR070360 Cardamine hirsuta HOM05D003652 ORTHO05D004190 1.9e-22 109.4 103 60.2
Nn1g06100 Nelumbo nucifera HOM05D003652 ORTHO05D004190 1.9e-22 109.4 107 54.2
FvH4_7g05280 Fragaria vesca HOM05D003652 ORTHO05D004190 2.5e-22 109.0 104 56.7
FAN01G0918 Fragaria x ananassa HOM05D003652 ORTHO05D004190 2.5e-22 109.0 104 56.7
FAN03G2156 Fragaria x ananassa HOM05D003652 ORTHO05D004190 2.5e-22 109.0 104 56.7
FAN06G2696 Fragaria x ananassa HOM05D003652 ORTHO05D004190 2.5e-22 109.0 104 56.7
MD02G1241400 Malus domestica HOM05D003652 ORTHO05D004190 2.5e-22 109.0 107 56.1
CAN.G89.17 Capsicum annuum HOM05D003652 ORTHO05D004190 5.5e-22 107.8 105 56.2
BcaC03g15706 Brassica carinata HOM05D003652 ORTHO05D004190 7.2e-22 107.5 104 54.8
C02p34110 Brassica napus HOM05D003652 ORTHO05D004190 7.2e-22 107.5 104 54.8
BolC2t09427H Brassica oleracea HOM05D003652 ORTHO05D004190 7.2e-22 107.5 104 54.8
Zm00001eb422350 Zea mays HOM05D003652 ORTHO05D004190 1.2e-21 106.7 98 56.1
Nitab4.5_0005926g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.6e-21 106.3 113 53.1
ECA236G0544 Erigeron canadensis HOM05D003652 ORTHO05D004190 3.6e-21 105.1 101 56.4
Zm00001eb083200 Zea mays HOM05D003652 ORTHO05D004190 1.0e-20 103.6 98 57.1
ATR0772G136 Amborella trichopoda HOM05D003652 ORTHO05D004190 5.2e-20 101.3 106 53.8
Solyc12g056520.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 2.0e-19 99.4 105 51.4
Sopen12g029110 Solanum pennellii HOM05D003652 ORTHO05D004190 2.0e-19 99.4 105 51.4
DCAR_014431 Daucus carota HOM05D003652 ORTHO05D004190 9.7e-19 97.1 105 50.5
MBI09_g47603_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 3.7e-18 95.1 98 54.1
CDE08G0217 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 1.1e-17 93.6 99 49.5
ECA247G2571 Erigeron canadensis HOM05D003652 ORTHO05D004190 1.8e-17 92.8 101 50.5
Actinidia29525 Actinidia chinensis HOM05D003652 ORTHO05D004190 4.1e-17 91.7 91 56.0
SHI18207 Sapria himalayana HOM05D003652 ORTHO05D004190 7.0e-17 90.9 105 44.8
CDE06G1552 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 1.2e-16 90.1 99 48.5
HanXRQChr02g0045411 Helianthus annuus HOM05D003652 ORTHO05D004190 1.0e-15 87.0 103 49.5
HanXRQChr06g0174441 Helianthus annuus HOM05D003652 ORTHO05D004190 1.0e-15 87.0 103 49.5
SEGI_34715 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 2.9e-15 85.5 98 50.0
MBI09_g20113_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 3.8e-15 85.1 98 52.0
A02p20930 Brassica napus HOM05D003652 ORTHO05D004190 7.2e-14 80.9 86 50.0
MBI09_g18624_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 8.0e-13 77.4 82 51.2
arahy.Tifrunner.gnm1.ann1.2W1LLW Arachis hypogaea HOM05D003652 ORTHO05D004190 9.8e-11 70.5 74 52.7
arahy.Tifrunner.gnm1.ann1.8KD3C5 Arachis hypogaea HOM05D003652 ORTHO05D004190 9.8e-11 70.5 74 52.7
AagrBONN_evm.TU.Sc2ySwM_344.5035 Anthoceros agrestis HOM05D003652 ORTHO05D004190 7.0e-09 64.3 99 38.4


User provided reference genes

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