Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 7.2e-121 437.2 211 100.0
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 2.8e-109 398.7 207 93.2
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 1.8e-108 396.0 207 92.8
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 3.7e-101 371.7 223 86.1
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 4.9e-101 371.3 218 86.7
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 5.4e-100 367.9 180 96.1
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 7.0e-100 367.5 220 85.9
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 4.7e-96 354.8 219 83.6
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 5.2e-95 351.3 182 92.3
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 1.3e-93 346.7 220 80.0
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 4.9e-93 344.7 184 90.2
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 1.0e-90 337.0 217 78.8
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 5.6e-89 331.3 182 87.4
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 5.6e-89 331.3 181 87.8
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 9.5e-89 330.5 181 87.8
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 1.8e-87 326.2 213 79.3
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 1.2e-86 323.6 207 79.2
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 2.1e-80 302.8 187 78.6
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 3.1e-79 298.9 189 76.7
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 3.4e-78 295.4 186 76.9
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 3.4e-78 295.4 186 76.9
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 7.6e-78 294.3 181 75.7
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 7.6e-78 294.3 189 75.7
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 1.4e-76 290.0 195 77.4
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 1.4e-76 290.0 193 73.1
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 2.4e-76 289.3 163 81.6
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 2.4e-76 289.3 189 72.5
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 3.2e-76 288.9 166 80.7
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 5.4e-76 288.1 184 73.4
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 1.2e-75 287.0 163 80.4
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.2e-75 287.0 181 73.5
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 1.0e-74 283.9 192 69.8
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 1.3e-74 283.5 174 75.3
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 1.7e-74 283.1 163 80.4
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 2.3e-74 282.7 180 72.8
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 2.3e-74 282.7 144 86.1
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 3.0e-74 282.3 143 87.4
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 3.9e-74 282.0 191 71.7
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 6.6e-74 281.2 178 73.6
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 6.6e-74 281.2 157 80.9
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 6.6e-74 281.2 166 80.7
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 8.7e-74 280.8 183 73.2
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 8.7e-74 280.8 160 80.0
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 8.7e-74 280.8 163 80.4
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 8.7e-74 280.8 166 78.3
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.1e-73 280.4 172 77.9
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 1.1e-73 280.4 150 85.3
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 2.5e-73 279.3 164 77.4
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 2.5e-73 279.3 169 76.9
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 2.5e-73 279.3 187 71.7
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 3.3e-73 278.9 180 73.9
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 4.3e-73 278.5 163 79.1
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 5.6e-73 278.1 147 83.7
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 7.3e-73 277.7 180 73.3
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 7.3e-73 277.7 182 69.2
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 7.3e-73 277.7 182 69.2
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 9.6e-73 277.3 181 71.8
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 9.6e-73 277.3 165 78.8
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 9.6e-73 277.3 187 67.4
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 1.3e-72 276.9 223 65.5
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.3e-72 276.9 180 73.3
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 1.6e-72 276.6 143 86.0
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 2.1e-72 276.2 178 69.7
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 6.2e-72 274.6 149 81.9
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 6.2e-72 274.6 183 70.5
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.1e-71 273.9 166 77.1
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 1.1e-71 273.9 166 77.1
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 1.1e-71 273.9 181 71.3
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 1.4e-71 273.5 154 81.2
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 1.4e-71 273.5 154 81.2
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 1.4e-71 273.5 144 84.0
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 1.8e-71 273.1 182 71.4
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 4.0e-71 271.9 191 67.0
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 6.9e-71 271.2 143 81.1
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 9.0e-71 270.8 151 78.8
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 3.4e-70 268.9 185 70.3
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 3.4e-70 268.9 180 70.6
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 5.8e-70 268.1 142 83.1
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 9.9e-70 267.3 177 70.1
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 3.8e-69 265.4 191 64.4
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 3.8e-69 265.4 155 78.7
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 1.1e-68 263.8 182 70.9
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 5.4e-68 261.5 142 80.3
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 7.1e-68 261.2 154 76.0
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 2.1e-67 259.6 141 78.7
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 6.0e-67 258.1 167 73.7
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 9.6e-65 250.8 163 70.6
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 3.6e-64 248.8 143 76.2
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 5.8e-62 241.5 140 72.9
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 7.6e-62 241.1 156 74.4
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 7.6e-62 241.1 126 84.1
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 2.2e-61 239.6 146 71.2
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 2.2e-61 239.6 158 71.5
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 1.1e-60 237.3 140 72.9
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 2.4e-60 236.1 119 89.1
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 7.1e-60 234.6 150 73.3
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 1.6e-59 233.4 159 71.1
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 1.0e-58 230.7 119 84.9
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 1.8e-58 229.9 126 84.1
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 1.8e-58 229.9 180 62.8
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.8e-58 229.9 127 79.5
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 3.3e-57 225.7 181 62.4
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.1e-55 220.7 140 67.9
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 5.3e-55 218.4 151 70.9
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 1.2e-54 217.2 168 63.7
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 4.5e-54 215.3 128 77.3
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.4e-52 210.3 120 78.3
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 7.9e-51 204.5 128 76.6
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 4.1e-47 192.2 146 66.4
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 4.5e-46 188.7 99 84.8
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 7.9e-43 177.9 151 53.0
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 2.5e-41 172.9 184 48.9
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 2.2e-40 169.9 93 83.9
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.4e-39 167.2 150 54.0
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.8e-39 166.8 146 52.7
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 4.1e-39 165.6 91 82.4
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 6.9e-39 164.9 153 53.6
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.3e-37 160.6 168 48.2
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.7e-37 160.2 87 82.8
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 2.2e-37 159.8 116 64.7
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 5.5e-36 155.2 224 50.9
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.3e-33 146.0 72 95.8
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 9.7e-33 144.4 140 47.9
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 1.3e-32 144.1 157 50.3
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.1e-31 139.4 70 94.3
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 3.1e-31 139.4 138 49.3
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 5.9e-30 135.2 85 71.8
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 1.7e-29 133.7 59 100.0
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 8.2e-24 114.8 170 39.4
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 2.4e-23 113.2 53 92.5
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.0e-21 107.8 118 45.8
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 9.7e-17 91.3 84 54.8
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 6.5e-13 78.6 146 38.4
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 1.5e-12 77.4 145 31.7
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 1.6e-11 73.9 79 54.4
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 2.3e-10 70.1 141 31.9
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 5.7e-09 65.5 31 83.9
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 3.5e-06 56.2 154 24.7
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 7.7e-06 55.1 57 45.6


User provided reference genes

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