Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25986 Brassica carinata HOM05D005712 ORTHO05D007865 2.0e-190 669.1 367 100.0
C05p19380 Brassica napus HOM05D005712 ORTHO05D007865 2.0e-190 669.1 367 100.0
BolC5t30641H Brassica oleracea HOM05D005712 ORTHO05D007865 4.8e-189 664.5 368 99.7
A06p16820 Brassica napus HOM05D005712 ORTHO05D007865 3.2e-172 608.6 370 91.1
BraA06t24791Z Brassica rapa HOM05D005712 ORTHO05D007865 1.6e-171 606.3 370 90.8
BcaB07g32078 Brassica carinata HOM05D005712 ORTHO05D007865 2.7e-171 605.5 368 90.5
Sp1g18530 Schrenkiella parvula HOM05D005712 ORTHO05D007865 1.1e-164 583.6 369 85.9
BcaB03g12849 Brassica carinata HOM05D005712 ORTHO05D007865 7.0e-164 580.9 371 83.0
Thhalv10007995m.g Eutrema salsugineum HOM05D005712 ORTHO05D007865 2.5e-161 572.4 367 85.6
AT1G20830 Arabidopsis thaliana HOM05D005712 ORTHO05D007865 5.1e-154 548.1 370 79.5
Carub.0001s2029 Capsella rubella HOM05D005712 ORTHO05D007865 9.5e-153 543.9 369 77.5
CARHR021260 Cardamine hirsuta HOM05D005712 ORTHO05D007865 2.6e-150 535.8 369 78.9
Aa31LG7G4990 Aethionema arabicum HOM05D005712 ORTHO05D007865 3.2e-140 502.3 366 72.1
THA.LOC104813742 Tarenaya hassleriana HOM05D005712 ORTHO05D007865 1.1e-119 434.1 372 66.1
AL1G33850 Arabidopsis lyrata HOM05D005712 ORTHO05D007865 3.4e-118 429.1 241 88.8
Thecc.08G064200 Theobroma cacao HOM05D005712 ORTHO05D007865 3.6e-99 365.9 369 56.1
Cpa.g.sc26.149 Carica papaya HOM05D005712 ORTHO05D007865 1.4e-98 364.0 385 56.1
COL.COLO4_07687 Corchorus olitorius HOM05D005712 ORTHO05D007865 2.3e-98 363.2 384 55.2
Duzib116G0237 Durio zibethinus HOM05D005712 ORTHO05D007865 1.5e-97 360.5 367 55.3
QL02p015343 Quercus lobata HOM05D005712 ORTHO05D007865 1.9e-92 343.6 381 53.8
Manes.05G126100 Manihot esculenta HOM05D005712 ORTHO05D007865 1.0e-90 337.8 361 53.5
Gohir.A05G177700 Gossypium hirsutum HOM05D005712 ORTHO05D007865 2.3e-90 336.7 335 54.0
Gohir.D05G181100 Gossypium hirsutum HOM05D005712 ORTHO05D007865 6.7e-90 335.1 337 53.4
Gorai.009G186100 Gossypium raimondii HOM05D005712 ORTHO05D007865 1.1e-89 334.3 329 55.0
Ciclev10001686m.g Citrus clementina HOM05D005712 ORTHO05D007865 4.4e-89 332.4 384 51.6
Dinv31977 Davidia involucrata HOM05D005712 ORTHO05D007865 9.7e-89 331.3 328 57.3
CiPaw.07G134700 Carya illinoinensis HOM05D005712 ORTHO05D007865 2.8e-88 329.7 328 55.8
Atru.chr13.78 Acer truncatum HOM05D005712 ORTHO05D007865 4.8e-88 328.9 247 67.2
CsaV3_4G037540 Cucumis sativus L. HOM05D005712 ORTHO05D007865 8.2e-88 328.2 357 55.5
Nn5g31025 Nelumbo nucifera HOM05D005712 ORTHO05D007865 1.4e-87 327.4 367 53.1
Actinidia17068 Actinidia chinensis HOM05D005712 ORTHO05D007865 3.1e-87 326.2 367 52.0
Actinidia15518 Actinidia chinensis HOM05D005712 ORTHO05D007865 2.6e-86 323.2 365 51.5
GSVIVG01013413001 Vitis vinifera HOM05D005712 ORTHO05D007865 2.6e-86 323.2 369 52.0
Potri.005G255300 Populus trichocarpa HOM05D005712 ORTHO05D007865 3.5e-86 322.8 384 50.0
TAR625G0170 Trochodendron aralioides HOM05D005712 ORTHO05D007865 5.9e-86 322.0 358 53.9
Sabra05G0197900 Salix brachista HOM05D005712 ORTHO05D007865 7.7e-86 321.6 302 57.0
Sed0012463 Sechium edule HOM05D005712 ORTHO05D007865 1.0e-85 321.2 340 53.8
CSS0017080 Camellia sinensis var. sinensis HOM05D005712 ORTHO05D007865 1.3e-85 320.9 370 50.3
TAR381G1666 Trochodendron aralioides HOM05D005712 ORTHO05D007865 5.0e-85 318.9 370 51.1
MELO3C017048.2 Cucumis melo HOM05D005712 ORTHO05D007865 6.5e-85 318.5 338 54.7
TWI12G0719 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 8.5e-85 318.2 361 51.5
Cfa014126 Carpinus fangiana HOM05D005712 ORTHO05D007865 7.2e-84 315.1 313 56.2
Potri.002G006300 Populus trichocarpa HOM05D005712 ORTHO05D007865 3.6e-83 312.8 301 56.5
vmacro21777 Vaccinium macrocarpon HOM05D005712 ORTHO05D007865 1.0e-82 311.2 256 61.7
HanXRQChr06g0185301 Helianthus annuus HOM05D005712 ORTHO05D007865 3.0e-82 309.7 302 57.6
TWI56G0384 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 3.0e-82 309.7 361 50.7
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 5.2e-82 308.9 247 64.0
PGSC0003DMG400000968 Solanum tuberosum HOM05D005712 ORTHO05D007865 5.2e-82 308.9 242 64.0
Migut.N02981 Erythranthe guttata HOM05D005712 ORTHO05D007865 6.7e-82 308.5 242 66.5
Ah.00g001120 Amaranthus hybridus HOM05D005712 ORTHO05D007865 8.8e-82 308.1 233 67.4
Lj4C5T14 Lonicera japonica HOM05D005712 ORTHO05D007865 1.2e-81 307.8 292 57.5
MBI05_g08201_MAGBIO Magnolia biondii HOM05D005712 ORTHO05D007865 1.2e-81 307.8 343 50.7
ECA238G0561 Erigeron canadensis HOM05D005712 ORTHO05D007865 2.0e-81 307.0 300 57.3
MSTRG.22087 Avicennia marina HOM05D005712 ORTHO05D007865 2.6e-81 306.6 239 66.9
Sopen08g012540 Solanum pennellii HOM05D005712 ORTHO05D007865 2.6e-81 306.6 242 63.6
Aqoxy6G01560 Aquilegia oxysepala HOM05D005712 ORTHO05D007865 3.3e-81 306.2 244 65.6
Nitab4.5_0004637g0020 Nicotiana tabacum HOM05D005712 ORTHO05D007865 3.3e-81 306.2 247 63.6
AUR62024105 Chenopodium quinoa HOM05D005712 ORTHO05D007865 5.7e-81 305.4 291 58.1
Phvul.009G007500 Phaseolus vulgaris HOM05D005712 ORTHO05D007865 5.7e-81 305.4 229 65.5
VMungo1309G2122 Vigna mungo HOM05D005712 ORTHO05D007865 5.7e-81 305.4 210 69.5
ClCG11G018940 Citrullus lanatus HOM05D005712 ORTHO05D007865 9.7e-81 304.7 356 51.1
Nitab4.5_0000486g0150 Nicotiana tabacum HOM05D005712 ORTHO05D007865 9.7e-81 304.7 247 63.2
CAN.G36.16 Capsicum annuum HOM05D005712 ORTHO05D007865 2.2e-80 303.5 242 63.2
Solyc08g042080.3 Solanum lycopersicum HOM05D005712 ORTHO05D007865 2.2e-80 303.5 242 63.2
Lsat_1_v5_gn_2_2221 Lactuca sativa HOM05D005712 ORTHO05D007865 4.8e-80 302.4 292 55.5
Hma1.2p1_0699F.1_g205630 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 6.3e-80 302.0 259 62.2
Hund05083 Selenicereus undatus HOM05D005712 ORTHO05D007865 6.3e-80 302.0 356 50.8
Glyma.06G015100 Glycine max HOM05D005712 ORTHO05D007865 1.1e-79 301.2 234 63.7
CDE04G2669 Ceratophyllum demersum HOM05D005712 ORTHO05D007865 2.4e-79 300.1 247 63.2
CANSAT35G0891 Cannabis sativa HOM05D005712 ORTHO05D007865 3.1e-79 299.7 244 64.3
Oeu004544.1 Olea europaea HOM05D005712 ORTHO05D007865 3.1e-79 299.7 368 51.1
Eucgr.F03584 Eucalyptus grandis HOM05D005712 ORTHO05D007865 1.6e-78 297.4 347 49.0
arahy.Tifrunner.gnm1.ann1.CTTM8W Arachis hypogaea HOM05D005712 ORTHO05D007865 2.0e-78 297.0 252 61.9
Haze_22847 Corylus avellana HOM05D005712 ORTHO05D007865 2.0e-78 297.0 356 49.2
SGA_v2.0_scaffold54G19632 Striga asiatica HOM05D005712 ORTHO05D007865 3.5e-78 296.2 226 67.3
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 5.9e-78 295.4 378 47.1
Cc10_g00320 Coffea canephora HOM05D005712 ORTHO05D007865 2.2e-77 293.5 240 64.2
PSO675G3648 Papaver somniferum HOM05D005712 ORTHO05D007865 2.2e-77 293.5 365 48.8
Lalb_Chr23g0265571 Lupinus albus HOM05D005712 ORTHO05D007865 2.9e-77 293.1 241 63.5
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 5.0e-77 292.4 245 60.8
PSO541G4707 Papaver somniferum HOM05D005712 ORTHO05D007865 6.5e-77 292.0 339 51.3
Lj1g0001697 Lotus japonicus HOM05D005712 ORTHO05D007865 8.5e-77 291.6 246 61.4
Ca_15390_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 1.5e-76 290.8 237 60.3
Glyma.04G015100 Glycine max HOM05D005712 ORTHO05D007865 4.2e-76 289.3 236 62.3
MD06G1005200 Malus domestica HOM05D005712 ORTHO05D007865 9.4e-76 288.1 376 48.1
EL10Ac1g01884 Beta vulgaris HOM05D005712 ORTHO05D007865 2.1e-75 287.0 323 52.0
SalBow6G6969 Salvia bowleyana HOM05D005712 ORTHO05D007865 3.6e-75 286.2 290 55.9
Prupe.5G006400 Prunus persica HOM05D005712 ORTHO05D007865 6.1e-75 285.4 291 53.6
Peaxi162Scf00632g00416 Petunia axillaris HOM05D005712 ORTHO05D007865 1.4e-74 284.3 250 59.6
Medtr3g116050 Medicago truncatula HOM05D005712 ORTHO05D007865 4.0e-74 282.7 247 59.1
AUR62035160 Chenopodium quinoa HOM05D005712 ORTHO05D007865 6.8e-74 282.0 204 71.1
arahy.Tifrunner.gnm1.ann1.16JRKN Arachis hypogaea HOM05D005712 ORTHO05D007865 1.2e-73 281.2 239 61.5
RcHm_v2.0_Chr7g0216471 Rosa chinensis HOM05D005712 ORTHO05D007865 1.2e-73 281.2 371 47.2
FAN08G0897 Fragaria x ananassa HOM05D005712 ORTHO05D007865 9.8e-73 278.1 361 47.9
FvH4_5g25940 Fragaria vesca HOM05D005712 ORTHO05D007865 2.2e-72 276.9 308 50.0
FAN18G0352 Fragaria x ananassa HOM05D005712 ORTHO05D007865 2.2e-72 276.9 360 46.9
Hma1.2p1_0699F.1_g205640 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 2.8e-72 276.6 181 74.0
Ca_29628_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 3.7e-72 276.2 202 67.3
FAN13G2028 Fragaria x ananassa HOM05D005712 ORTHO05D007865 1.4e-71 274.2 360 46.7
RcHm_v2.0_Chr4g0410601 Rosa chinensis HOM05D005712 ORTHO05D007865 1.8e-71 273.9 237 59.9
TPR.G38133 Trifolium pratense HOM05D005712 ORTHO05D007865 2.4e-71 273.5 228 61.4
ATR0807G100 Amborella trichopoda HOM05D005712 ORTHO05D007865 3.1e-71 273.1 230 60.4
FAN04G3045 Fragaria x ananassa HOM05D005712 ORTHO05D007865 2.3e-69 266.9 376 45.5
unitig_22.g5745 Utricularia gibba HOM05D005712 ORTHO05D007865 6.5e-69 265.4 201 69.7
Psat5g008680 Pisum sativum HOM05D005712 ORTHO05D007865 3.2e-68 263.1 189 69.3
HPP92_022548 Vanilla planifolia HOM05D005712 ORTHO05D007865 6.6e-61 238.8 234 56.0
SEGI_27803 Sequoiadendron giganteum HOM05D005712 ORTHO05D007865 4.7e-59 232.6 183 61.2
Zm00001eb428100 Zea mays HOM05D005712 ORTHO05D007865 4.0e-58 229.6 247 49.8
Cpa.g.sc26.148 Carica papaya HOM05D005712 ORTHO05D007865 5.2e-58 229.2 154 72.7
Zm00001eb072780 Zea mays HOM05D005712 ORTHO05D007865 2.6e-57 226.9 234 52.6
Os04g0584900 Oryza sativa ssp. japonica HOM05D005712 ORTHO05D007865 6.4e-56 222.2 250 48.8
Mapoly0022s0159 Marchantia polymorpha HOM05D005712 ORTHO05D007865 5.2e-50 202.6 178 53.4
Oeu019899.1 Olea europaea HOM05D005712 ORTHO05D007865 3.7e-48 196.4 121 76.0
AagrBONN_evm.TU.Sc2ySwM_117.1031 Anthoceros agrestis HOM05D005712 ORTHO05D007865 8.3e-48 195.3 171 54.4
Pp3c9_6030 Physcomitrium patens HOM05D005712 ORTHO05D007865 8.3e-48 195.3 191 51.3
SMO276G0054 Selaginella moellendorffii HOM05D005712 ORTHO05D007865 2.0e-46 190.7 215 51.6
Pp3c15_5620 Physcomitrium patens HOM05D005712 ORTHO05D007865 2.7e-46 190.3 190 50.5
Duzib093G1432 Durio zibethinus HOM05D005712 ORTHO05D007865 1.0e-45 188.3 103 82.5
Cpa.g.c30366.3 Carica papaya HOM05D005712 ORTHO05D007865 1.1e-31 141.7 79 79.7
Cpa.g.c44851 Carica papaya HOM05D005712 ORTHO05D007865 4.6e-30 136.3 69 87.0
BcaB07g32077 Brassica carinata HOM05D005712 ORTHO05D007865 1.0e-21 108.6 64 84.4
Oeu019902.1 Olea europaea HOM05D005712 ORTHO05D007865 2.4e-18 97.4 63 74.6
BolC8t49668H Brassica oleracea HOM05D005712 ORTHO05D032168 6.9e-18 95.9 297 31.3
A07p15460 Brassica napus HOM05D005712 ORTHO05D007865 4.5e-17 93.2 61 72.1
BcaC07g39055 Brassica carinata HOM05D005712 ORTHO05D032168 3.8e-16 90.1 152 41.4
C08p20390 Brassica napus HOM05D005712 ORTHO05D032168 1.3e-13 81.6 323 28.8
BcaB03g14422 Brassica carinata HOM05D005712 ORTHO05D014368 4.5e-09 66.6 43 74.4


User provided reference genes

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