Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25942 Brassica carinata HOM05D003567 ORTHO05D004117 1.1e-142 510.0 260 100.0
BcaC09g49610 Brassica carinata HOM05D003567 ORTHO05D004117 8.0e-138 493.8 264 96.6
C01p34500 Brassica napus HOM05D003567 ORTHO05D004117 8.0e-138 493.8 264 96.6
BolC1t03421H Brassica oleracea HOM05D003567 ORTHO05D004117 8.0e-138 493.8 264 96.6
BraA01t02844Z Brassica rapa HOM05D003567 ORTHO05D004117 6.4e-135 484.2 264 95.5
BcaB04g20139 Brassica carinata HOM05D003567 ORTHO05D004117 6.4e-127 457.6 262 92.0
SpUn0002_0170 Schrenkiella parvula HOM05D003567 ORTHO05D004117 2.7e-117 425.6 269 83.6
Thhalv10023619m.g Eutrema salsugineum HOM05D003567 ORTHO05D004117 2.1e-109 399.4 268 78.4
AL1G65120 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 3.8e-103 378.6 270 77.0
Carub.0002s0892 Capsella rubella HOM05D003567 ORTHO05D004117 1.5e-96 356.7 269 73.2
AT1G54680 Arabidopsis thaliana HOM05D003567 ORTHO05D004117 3.4e-96 355.5 266 72.6
CARHR055820 Cardamine hirsuta HOM05D003567 ORTHO05D004117 7.6e-96 354.4 274 70.4
Aa31LG2G12110 Aethionema arabicum HOM05D003567 ORTHO05D004117 1.4e-89 333.6 284 64.4
A01p27100 Brassica napus HOM05D003567 ORTHO05D004117 2.7e-77 292.7 156 96.8
THA.LOC104805845 Tarenaya hassleriana HOM05D003567 ORTHO05D004117 1.3e-74 283.9 280 57.1
C05p18930 Brassica napus HOM05D003567 ORTHO05D004117 7.9e-61 238.0 121 100.0
AL7G51030 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 2.6e-56 223.0 169 73.4
Dinv40231 Davidia involucrata HOM05D003567 ORTHO05D004117 1.6e-53 213.8 286 44.1
PGR031G3379 Punica granatum HOM05D003567 ORTHO05D004117 3.6e-53 212.6 276 46.0
Cpa.g.sc84.116 Carica papaya HOM05D003567 ORTHO05D004117 2.0e-51 206.8 255 47.1
TAR365G0081 Trochodendron aralioides HOM05D003567 ORTHO05D004117 4.4e-51 205.7 279 40.5
GSVIVG01022012001 Vitis vinifera HOM05D003567 ORTHO05D004117 4.4e-51 205.7 269 44.6
Nn3g21221 Nelumbo nucifera HOM05D003567 ORTHO05D004117 8.2e-50 201.4 268 42.9
Eucgr.H04432 Eucalyptus grandis HOM05D003567 ORTHO05D004117 3.0e-44 183.0 282 39.0
Aqoxy2G03162 Aquilegia oxysepala HOM05D003567 ORTHO05D004117 4.0e-44 182.6 280 38.9
Sed0008957 Sechium edule HOM05D003567 ORTHO05D004117 8.8e-44 181.4 279 38.0
Lj9A677G34 Lonicera japonica HOM05D003567 ORTHO05D004117 4.4e-43 179.1 253 40.7
Duzib106G0722 Durio zibethinus HOM05D003567 ORTHO05D004117 9.7e-43 177.9 276 39.9
PSO170G0922 Papaver somniferum HOM05D003567 ORTHO05D004117 1.7e-42 177.2 281 39.1
CAN.G566.56 Capsicum annuum HOM05D003567 ORTHO05D004117 8.2e-42 174.9 253 42.7
Solyc08g042140.3 Solanum lycopersicum HOM05D003567 ORTHO05D004117 1.1e-41 174.5 276 40.9
Oeu033946.2 Olea europaea HOM05D003567 ORTHO05D004117 1.8e-41 173.7 293 39.6
Nitab4.5_0006272g0050 Nicotiana tabacum HOM05D003567 ORTHO05D004117 2.4e-41 173.3 275 42.2
Actinidia30900 Actinidia chinensis HOM05D003567 ORTHO05D004117 2.0e-40 170.2 241 41.9
ECA246G0369 Erigeron canadensis HOM05D003567 ORTHO05D004117 3.8e-39 166.0 282 38.3
Migut.L01511 Erythranthe guttata HOM05D003567 ORTHO05D004117 3.8e-39 166.0 276 42.4
ClCG03G016600 Citrullus lanatus HOM05D003567 ORTHO05D004117 1.5e-38 164.1 306 33.7
SGA_v2.0_scaffold21G09406 Striga asiatica HOM05D003567 ORTHO05D004117 4.7e-37 159.1 309 38.5
Peaxi162Scf00071g00838 Petunia axillaris HOM05D003567 ORTHO05D004117 6.1e-37 158.7 264 41.3
TAR362G0113 Trochodendron aralioides HOM05D003567 ORTHO05D004117 2.3e-36 156.8 275 35.6
PSO302G0249 Papaver somniferum HOM05D003567 ORTHO05D004117 4.0e-36 156.0 308 35.4
Gohir.D11G270600 Gossypium hirsutum HOM05D003567 ORTHO05D004117 6.8e-36 155.2 301 32.9
Gorai.007G291100 Gossypium raimondii HOM05D003567 ORTHO05D004117 6.8e-36 155.2 301 32.9
HanXRQChr12g0379821 Helianthus annuus HOM05D003567 ORTHO05D004117 1.2e-35 154.5 267 36.7
Aqoxy2G03161 Aquilegia oxysepala HOM05D003567 ORTHO05D004117 2.0e-35 153.7 301 35.2
THA.LOC104802813 Tarenaya hassleriana HOM05D003567 ORTHO05D004117 9.8e-35 151.4 301 33.9
PGSC0003DMG400010083 Solanum tuberosum HOM05D003567 ORTHO05D004117 1.3e-34 151.0 303 32.7
SGA_v2.0_scaffold21G09407 Striga asiatica HOM05D003567 ORTHO05D004117 1.3e-34 151.0 300 33.0
Sopen02g034720 Solanum pennellii HOM05D003567 ORTHO05D004117 1.7e-34 150.6 303 32.7
Duzib177G1144 Durio zibethinus HOM05D003567 ORTHO05D004117 2.2e-34 150.2 302 34.1
Manes.08G124900 Manihot esculenta HOM05D003567 ORTHO05D004117 2.8e-34 149.8 300 33.3
Atru.chr2.536 Acer truncatum HOM05D003567 ORTHO05D004117 3.7e-34 149.4 300 32.3
A09p05230 Brassica napus HOM05D003567 ORTHO05D004117 3.7e-34 149.4 301 33.2
Cpa.g.sc84.115 Carica papaya HOM05D003567 ORTHO05D004117 3.7e-34 149.4 314 32.8
Ciclev10001775m.g Citrus clementina HOM05D003567 ORTHO05D004117 3.7e-34 149.4 300 32.0
BraA09t36162Z Brassica rapa HOM05D003567 ORTHO05D004117 6.3e-34 148.7 301 32.9
CDE05G1895 Ceratophyllum demersum HOM05D003567 ORTHO05D004117 8.3e-34 148.3 300 33.0
Cc02_g32800 Coffea canephora HOM05D003567 ORTHO05D004117 1.1e-33 147.9 300 34.0
COL.COLO4_13563 Corchorus olitorius HOM05D003567 ORTHO05D004117 1.1e-33 147.9 301 31.9
Rhsim05G0146400 Rhododendron simsii HOM05D003567 ORTHO05D004117 1.1e-33 147.9 302 33.1
GSVIVG01022011001 Vitis vinifera HOM05D003567 ORTHO05D004117 1.1e-33 147.9 300 33.7
ATR0487G007 Amborella trichopoda HOM05D003567 ORTHO05D004117 1.4e-33 147.5 304 33.6
Aa31LG11G9050 Aethionema arabicum HOM05D003567 ORTHO05D004117 1.8e-33 147.1 302 30.8
PGR031G0264 Punica granatum HOM05D003567 ORTHO05D004117 1.8e-33 147.1 301 33.2
RcHm_v2.0_Chr3g0453431 Rosa chinensis HOM05D003567 ORTHO05D004117 1.8e-33 147.1 303 33.3
BcaB04g19661 Brassica carinata HOM05D003567 ORTHO05D004117 3.1e-33 146.4 300 33.0
CSS0000473 Camellia sinensis var. sinensis HOM05D003567 ORTHO05D004117 3.1e-33 146.4 300 32.3
CSS0010999 Camellia sinensis var. sinensis HOM05D003567 ORTHO05D004117 3.1e-33 146.4 300 32.3
MD04G1212700 Malus domestica HOM05D003567 ORTHO05D004117 3.1e-33 146.4 300 32.0
SalBow1G3301 Salvia bowleyana HOM05D003567 ORTHO05D004117 3.1e-33 146.4 300 33.0
Thecc.05G296900 Theobroma cacao HOM05D003567 ORTHO05D004117 3.1e-33 146.4 301 31.9
PSO170G0105 Papaver somniferum HOM05D003567 ORTHO05D004117 4.1e-33 146.0 301 32.2
Sabra13G0029300 Salix brachista HOM05D003567 ORTHO05D004117 4.1e-33 146.0 300 32.0
BolC9t53498H Brassica oleracea HOM05D003567 ORTHO05D004117 5.4e-33 145.6 300 32.7
CAN.G836.16 Capsicum annuum HOM05D003567 ORTHO05D004117 5.4e-33 145.6 303 32.3
Ca_09384_v3 Cicer arietinum L. HOM05D003567 ORTHO05D004117 5.4e-33 145.6 300 32.7
ECA246G1301 Erigeron canadensis HOM05D003567 ORTHO05D004117 5.4e-33 145.6 301 33.9
Eucgr.H04431 Eucalyptus grandis HOM05D003567 ORTHO05D004117 5.4e-33 145.6 301 32.9
HanXRQChr16g0512311 Helianthus annuus HOM05D003567 ORTHO05D004117 7.0e-33 145.2 304 33.6
Potri.013G029000 Populus trichocarpa HOM05D003567 ORTHO05D004117 7.0e-33 145.2 300 31.0
CANSAT54G0395 Cannabis sativa HOM05D003567 ORTHO05D004117 9.1e-33 144.8 300 32.3
C09p05690 Brassica napus HOM05D003567 ORTHO05D004117 1.2e-32 144.4 300 32.7
AUR62005073 Chenopodium quinoa HOM05D003567 ORTHO05D004117 1.2e-32 144.4 300 31.3
Lj1g0016651 Lotus japonicus HOM05D003567 ORTHO05D004117 1.2e-32 144.4 300 32.3
Nn3g21224 Nelumbo nucifera HOM05D003567 ORTHO05D004117 1.2e-32 144.4 303 34.0
arahy.Tifrunner.gnm1.ann1.86SZEE Arachis hypogaea HOM05D003567 ORTHO05D004117 1.6e-32 144.1 303 31.0
FvH4_6g04940 Fragaria vesca HOM05D003567 ORTHO05D004117 2.0e-32 143.7 301 31.9
CARHR185910 Cardamine hirsuta HOM05D003567 ORTHO05D004117 2.7e-32 143.3 304 30.9
Os01g0382700 Oryza sativa ssp. japonica HOM05D003567 ORTHO05D004117 3.5e-32 142.9 303 33.3
BcaB04g19664 Brassica carinata HOM05D003567 ORTHO05D004117 4.5e-32 142.5 300 32.0
BcaC04g23684 Brassica carinata HOM05D003567 ORTHO05D004117 4.5e-32 142.5 300 32.0
Migut.L01512 Erythranthe guttata HOM05D003567 ORTHO05D004117 4.5e-32 142.5 297 32.0
Medtr7g114070 Medicago truncatula HOM05D003567 ORTHO05D004117 4.5e-32 142.5 301 30.6
Nitab4.5_0008257g0040 Nicotiana tabacum HOM05D003567 ORTHO05D004117 4.5e-32 142.5 303 31.4
Sp2g20530 Schrenkiella parvula HOM05D003567 ORTHO05D004117 4.5e-32 142.5 300 33.0
BcaC04g23687 Brassica carinata HOM05D003567 ORTHO05D004117 5.9e-32 142.1 300 33.0
DCAR_016974 Daucus carota HOM05D003567 ORTHO05D004117 5.9e-32 142.1 302 32.1
AT5G27290 Arabidopsis thaliana HOM05D003567 ORTHO05D004117 7.7e-32 141.7 305 31.5
Thhalv10004533m.g Eutrema salsugineum HOM05D003567 ORTHO05D004117 7.7e-32 141.7 301 32.2
FAN14G3462 Fragaria x ananassa HOM05D003567 ORTHO05D004117 1.3e-31 141.0 300 31.0
Psat3g009280 Pisum sativum HOM05D003567 ORTHO05D004117 1.3e-31 141.0 300 30.0
AUR62000902 Chenopodium quinoa HOM05D003567 ORTHO05D004117 1.7e-31 140.6 276 33.0
VMungo0540G1876 Vigna mungo HOM05D003567 ORTHO05D004117 2.3e-31 140.2 300 30.3
Lalb_Chr18g0045341 Lupinus albus HOM05D003567 ORTHO05D004117 2.9e-31 139.8 300 30.7
Oeu025239.1 Olea europaea HOM05D003567 ORTHO05D004117 3.8e-31 139.4 332 29.5
arahy.Tifrunner.gnm1.ann1.BBX3WJ Arachis hypogaea HOM05D003567 ORTHO05D004117 5.0e-31 139.0 320 30.3
PSO170G3637 Papaver somniferum HOM05D003567 ORTHO05D004117 5.0e-31 139.0 300 30.7
Hund07025 Selenicereus undatus HOM05D003567 ORTHO05D004117 5.0e-31 139.0 315 31.1
TPR.G21793 Trifolium pratense HOM05D003567 ORTHO05D004117 5.0e-31 139.0 305 32.5
AL6G39790 Arabidopsis lyrata HOM05D003567 ORTHO05D004117 6.5e-31 138.7 304 30.6
EL10Ac4g09285 Beta vulgaris HOM05D003567 ORTHO05D004117 6.5e-31 138.7 309 31.1
Sc06g0003450 Simmondsia chinensis HOM05D003567 ORTHO05D004117 8.6e-31 138.3 163 42.9
Carub.0006s2522 Capsella rubella HOM05D003567 ORTHO05D004117 1.1e-30 137.9 301 31.9
Cfa006520 Carpinus fangiana HOM05D003567 ORTHO05D004117 1.1e-30 137.9 302 30.8
PSO302G0281 Papaver somniferum HOM05D003567 ORTHO05D004117 1.5e-30 137.5 302 31.1
Phvul.006G095900 Phaseolus vulgaris HOM05D003567 ORTHO05D004117 1.5e-30 137.5 297 30.6
QL03p002916 Quercus lobata HOM05D003567 ORTHO05D004117 1.9e-30 137.1 325 30.5
QL03p003527 Quercus lobata HOM05D003567 ORTHO05D004117 1.9e-30 137.1 325 30.5
unitig_578.g16416 Utricularia gibba HOM05D003567 ORTHO05D004117 1.9e-30 137.1 300 31.0
Glyma.03G241900 Glycine max HOM05D003567 ORTHO05D004117 3.3e-30 136.3 300 30.3
Sed0017789 Sechium edule HOM05D003567 ORTHO05D004117 7.2e-30 135.2 300 30.7
Cc02_g32780 Coffea canephora HOM05D003567 ORTHO05D004117 2.1e-29 133.7 204 37.3
DCAR_003305 Daucus carota HOM05D003567 ORTHO05D004117 2.8e-29 133.3 261 36.8
Lsat_1_v5_gn_5_38921 Lactuca sativa HOM05D003567 ORTHO05D004117 2.8e-29 133.3 303 30.7
CsaV3_1G039400 Cucumis sativus L. HOM05D003567 ORTHO05D004117 3.6e-29 132.9 300 29.7
ClCG03G016590 Citrullus lanatus HOM05D003567 ORTHO05D004117 1.0e-28 131.3 300 29.7
Peaxi162Scf00338g00312 Petunia axillaris HOM05D003567 ORTHO05D004117 5.2e-28 129.0 257 32.7
Nitab4.5_0000027g0510 Nicotiana tabacum HOM05D003567 ORTHO05D004117 6.8e-28 128.6 232 38.4
SEGI_02572 Sequoiadendron giganteum HOM05D003567 ORTHO05D004117 1.2e-27 127.9 164 39.6
Glyma.19G239300 Glycine max HOM05D003567 ORTHO05D004117 1.5e-27 127.5 164 37.8
Nitab4.5_0000327g0090 Nicotiana tabacum HOM05D003567 ORTHO05D004117 2.0e-27 127.1 303 29.4
CiPaw.08G174300 Carya illinoinensis HOM05D003567 ORTHO05D004117 8.3e-26 121.7 160 40.0
SMO367G0890 Selaginella moellendorffii HOM05D003567 ORTHO05D004117 1.1e-25 121.3 164 39.0
Lj9A677T42 Lonicera japonica HOM05D003567 ORTHO05D004117 1.4e-25 120.9 326 29.8
Haze_04266 Corylus avellana HOM05D003567 ORTHO05D004117 1.8e-25 120.6 162 37.7
SalBow1G7230 Salvia bowleyana HOM05D003567 ORTHO05D004117 2.7e-24 116.7 275 37.1
Actinidia19813 Actinidia chinensis HOM05D003567 ORTHO05D004117 3.5e-24 116.3 237 33.8
Solyc02g090020.4 Solanum lycopersicum HOM05D003567 ORTHO05D004117 6.6e-23 112.1 253 32.8
Rhsim07G0178200 Rhododendron simsii HOM05D003567 ORTHO05D004117 1.1e-22 111.3 158 44.3
CiPaw.08G174900 Carya illinoinensis HOM05D003567 ORTHO05D004117 2.5e-22 110.2 273 28.6
AagrBONN_evm.TU.Sc2ySwM_344.4623 Anthoceros agrestis HOM05D003567 ORTHO05D004117 3.3e-22 109.8 157 38.2
vmacro19654 Vaccinium macrocarpon HOM05D003567 ORTHO05D004117 8.0e-21 105.1 397 26.2
Mapoly0059s0075 Marchantia polymorpha HOM05D003567 ORTHO05D004117 1.0e-20 104.8 164 33.5
Pp3c5_10750 Physcomitrium patens HOM05D003567 ORTHO05D004117 1.8e-20 104.0 158 36.1
CBR_g53664 Chara braunii HOM05D003567 ORTHO05D004117 2.3e-20 103.6 165 33.3
PSO302G0180 Papaver somniferum HOM05D003567 ORTHO05D004117 2.3e-20 103.6 251 29.5
CsaV3_1G039390 Cucumis sativus L. HOM05D003567 ORTHO05D004117 4.0e-20 102.8 164 39.6
Sopen08g012750 Solanum pennellii HOM05D003567 ORTHO05D004117 1.5e-19 100.9 94 53.2
MELO3C015365.2 Cucumis melo HOM05D003567 ORTHO05D004117 2.6e-19 100.1 317 25.2
CiPaw.08G171500 Carya illinoinensis HOM05D003567 ORTHO05D004117 4.4e-19 99.4 155 34.2
CiPaw.08G171000 Carya illinoinensis HOM05D003567 ORTHO05D004117 7.5e-19 98.6 132 37.1
MELO3C029313.2 Cucumis melo HOM05D003567 ORTHO05D004117 9.8e-19 98.2 94 50.0
vmacro05046 Vaccinium macrocarpon HOM05D003567 ORTHO05D004117 9.8e-19 98.2 174 37.9
AUR62033882 Chenopodium quinoa HOM05D003567 ORTHO05D004117 2.2e-18 97.1 204 32.4
PRCOL_00003025 Prasinoderma coloniale HOM05D003567 ORTHO05D004117 8.3e-18 95.1 160 33.8
MCO11G582 Micromonas commoda HOM05D003567 ORTHO05D004117 1.2e-16 91.3 160 30.6
Sopen08g012740 Solanum pennellii HOM05D003567 ORTHO05D004117 3.5e-16 89.7 156 39.1
Manes.09G161401 Manihot esculenta HOM05D003567 ORTHO05D004117 6.0e-16 89.0 106 44.3
Cre01.g055412 Chlamydomonas reinhardtii HOM05D003567 ORTHO05D004117 7.8e-16 88.6 154 31.2
MELO3C029314.2 Cucumis melo HOM05D003567 ORTHO05D004117 7.8e-16 88.6 188 32.4
AUR62025002 Chenopodium quinoa HOM05D003567 ORTHO05D004117 2.3e-15 87.0 104 39.4
AUR62030520 Chenopodium quinoa HOM05D003567 ORTHO05D004117 2.3e-15 87.0 104 39.4
AUR62032573 Chenopodium quinoa HOM05D003567 ORTHO05D004117 2.3e-15 87.0 104 39.4
AUR62037588 Chenopodium quinoa HOM05D003567 ORTHO05D004117 2.3e-15 87.0 104 39.4
AUR62043825 Chenopodium quinoa HOM05D003567 ORTHO05D004117 1.1e-12 78.2 160 30.0
Gohir.A11G260300 Gossypium hirsutum HOM05D003567 ORTHO05D004117 1.1e-12 78.2 192 30.2
AUR62026190 Chenopodium quinoa HOM05D003567 ORTHO05D004117 1.4e-12 77.8 92 42.4
MSTRG.10546 Avicennia marina HOM05D003567 ORTHO05D004117 4.0e-12 76.3 97 47.4
CiPaw.08G169100 Carya illinoinensis HOM05D003567 ORTHO05D004117 5.2e-12 75.9 134 30.6
Lsat_1_v5_gn_5_39020 Lactuca sativa HOM05D003567 ORTHO05D004117 5.2e-12 75.9 158 33.5
Duzib128G1838 Durio zibethinus HOM05D003567 ORTHO05D004117 2.6e-11 73.6 88 37.5
Dinv22925 Davidia involucrata HOM05D003567 ORTHO05D004117 1.3e-10 71.2 192 29.2
Prupe.6G333000 Prunus persica HOM05D003567 ORTHO05D004117 1.7e-10 70.9 192 28.1
CiPaw.08G170300 Carya illinoinensis HOM05D003567 ORTHO05D004117 8.3e-10 68.6 215 27.4
CBR_g22370 Chara braunii HOM05D003567 ORTHO05D004117 1.1e-09 68.2 181 29.3
Zm00001eb131930 Zea mays HOM05D003567 ORTHO05D004117 3.2e-09 66.6 145 33.1
Lsat_1_v5_gn_5_38361 Lactuca sativa HOM05D003567 ORTHO05D004117 3.9e-07 59.7 59 45.8
Ah.01g016620 Amaranthus hybridus HOM05D003567 ORTHO05D004117 1.1e-06 58.2 102 32.4
CiPaw.08G169600 Carya illinoinensis HOM05D003567 ORTHO05D004117 1.5e-06 57.8 53 47.2
CiPaw.08G176400 Carya illinoinensis HOM05D003567 ORTHO05D004117 1.9e-06 57.4 53 47.2
Mapoly0080s0063 Marchantia polymorpha HOM05D007284 ORTHO05D009303 4.3e-06 56.2 165 23.6


User provided reference genes

Program Settings