Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25909 Brassica carinata HOM05D003211 ORTHO05D003621 3.5e-106 388.3 190 100.0
BolC5t30571H Brassica oleracea HOM05D003211 ORTHO05D003621 2.1e-58 229.6 115 97.4
C05p18600 Brassica napus HOM05D003211 ORTHO05D003621 9.6e-56 220.7 120 90.8
AL1G32920 Arabidopsis lyrata HOM05D003211 ORTHO05D003621 1.8e-25 120.2 224 42.9
CARHR020600 Cardamine hirsuta HOM05D003211 ORTHO05D003621 3.9e-25 119.0 231 41.6
Sp1g17880 Schrenkiella parvula HOM05D003211 ORTHO05D003621 5.7e-24 115.2 223 39.9
Carub.0001s1964 Capsella rubella HOM05D003211 ORTHO05D003621 3.7e-23 112.5 221 40.3
Aa31LG4G6080 Aethionema arabicum HOM05D003211 ORTHO05D003621 2.4e-22 109.8 223 41.7
Thhalv10007122m.g Eutrema salsugineum HOM05D003211 ORTHO05D003621 2.0e-21 106.7 226 39.8
AT1G20110 Arabidopsis thaliana HOM05D003211 ORTHO05D003621 3.4e-21 105.9 221 42.1
C07p23340 Brassica napus HOM05D003211 ORTHO05D003621 2.8e-15 86.3 139 48.9
BolC7t42867H Brassica oleracea HOM05D003211 ORTHO05D003621 2.8e-15 86.3 139 48.9
Glyma.06G023000 Glycine max HOM05D003211 ORTHO05D003621 1.3e-12 77.4 183 38.8
THA.LOC104809587 Tarenaya hassleriana HOM05D003211 ORTHO05D003621 1.3e-12 77.4 193 38.3
THA.LOC104811427 Tarenaya hassleriana HOM05D003211 ORTHO05D003621 1.3e-12 77.4 168 39.9
VMungo1309G1711 Vigna mungo HOM05D003211 ORTHO05D003621 1.9e-11 73.6 195 34.4
Phvul.009G018000 Phaseolus vulgaris HOM05D003211 ORTHO05D003621 2.5e-11 73.2 199 33.7
COL.COLO4_26114 Corchorus olitorius HOM05D003211 ORTHO05D003621 3.6e-10 69.3 218 32.1
A08p29490 Brassica napus HOM05D003211 ORTHO05D003621 4.7e-10 68.9 188 37.8
BraA08t34886Z Brassica rapa HOM05D003211 ORTHO05D003621 4.7e-10 68.9 188 37.8
Lalb_Chr03g0033451 Lupinus albus HOM05D003211 ORTHO05D003621 6.1e-10 68.6 112 43.8
Potri.005G242700 Populus trichocarpa HOM05D003211 ORTHO05D003621 6.1e-10 68.6 218 30.7
Thecc.08G048400 Theobroma cacao HOM05D003211 ORTHO05D003621 6.1e-10 68.6 217 32.7
Medtr3g114080 Medicago truncatula HOM05D003211 ORTHO05D003621 3.0e-09 66.2 177 33.3
Sed0016624 Sechium edule HOM05D003211 ORTHO05D003621 3.9e-09 65.9 154 39.0
CSS0033408 Camellia sinensis var. sinensis HOM05D003211 ORTHO05D003621 5.1e-09 65.5 140 40.0
Lalb_Chr19g0131471 Lupinus albus HOM05D003211 ORTHO05D003621 6.7e-09 65.1 187 33.7
BcaB03g12880 Brassica carinata HOM05D003211 ORTHO05D003621 1.1e-08 64.3 204 32.4
Atru.chr13.250 Acer truncatum HOM05D003211 ORTHO05D003621 2.0e-08 63.5 54 59.3
Potri.002G018900 Populus trichocarpa HOM05D003211 ORTHO05D003621 2.0e-08 63.5 222 29.7
Cpa.g.sc26.295 Carica papaya HOM05D003211 ORTHO05D003621 4.4e-08 62.4 151 37.7
arahy.Tifrunner.gnm1.ann1.R2EEBA Arachis hypogaea HOM05D003211 ORTHO05D003621 7.4e-08 61.6 178 36.0
Gorai.009G192800 Gossypium raimondii HOM05D003211 ORTHO05D003621 7.4e-08 61.6 220 31.8
arahy.Tifrunner.gnm1.ann1.PQ7T65 Arachis hypogaea HOM05D003211 ORTHO05D003621 9.7e-08 61.2 127 42.5
Lj1g0003320 Lotus japonicus HOM05D003211 ORTHO05D003621 9.7e-08 61.2 181 33.1
Lsat_1_v5_gn_2_9160 Lactuca sativa HOM05D003211 ORTHO05D003621 1.3e-07 60.8 145 38.6
Cfa013985 Carpinus fangiana HOM05D003211 ORTHO05D003621 2.2e-07 60.1 187 34.8
Duzib093G0924 Durio zibethinus HOM05D003211 ORTHO05D003621 2.2e-07 60.1 219 32.4
Manes.18G011114 Manihot esculenta HOM05D003211 ORTHO05D003621 2.2e-07 60.1 195 33.3
Sabra02G0015200 Salix brachista HOM05D003211 ORTHO05D003621 2.8e-07 59.7 54 57.4
Ciclev10000707m.g Citrus clementina HOM05D003211 ORTHO05D003621 3.7e-07 59.3 145 34.5
PGR031G0024 Punica granatum HOM05D003211 ORTHO05D003621 4.8e-07 58.9 90 47.8
FAN27G3060 Fragaria x ananassa HOM05D003211 ORTHO05D003621 6.3e-07 58.5 36 75.0
Prupe.1G362200 Prunus persica HOM05D003211 ORTHO05D003621 1.4e-06 57.4 37 70.3
Gohir.D05G187600 Gossypium hirsutum HOM05D003211 ORTHO05D003621 1.8e-06 57.0 220 31.4
GSVIVG01009956001 Vitis vinifera HOM05D003211 ORTHO05D003621 1.8e-06 57.0 34 73.5
CANSAT25G3811 Cannabis sativa HOM05D003211 ORTHO05D003621 3.1e-06 56.2 157 35.7
TPR.G38138 Trifolium pratense HOM05D003211 ORTHO05D003621 3.1e-06 56.2 34 73.5
MELO3C003739.2 Cucumis melo HOM05D003211 ORTHO05D003621 4.1e-06 55.8 157 36.9
Gohir.A05G184800 Gossypium hirsutum HOM05D003211 ORTHO05D003621 4.1e-06 55.8 222 29.3
Haze_22671 Corylus avellana HOM05D003211 ORTHO05D003621 5.3e-06 55.5 196 31.6
QL02p012254 Quercus lobata HOM05D003211 ORTHO05D003621 7.0e-06 55.1 148 35.1
PGSC0003DMG400009878 Solanum tuberosum HOM05D003211 ORTHO05D003621 7.0e-06 55.1 133 36.1


User provided reference genes

Program Settings