Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25908 Brassica carinata HOM05D008819 ORTHO05D003197 1.8e-137 492.7 268 100.0
C05p18590 Brassica napus HOM05D008819 ORTHO05D003197 1.8e-137 492.7 268 100.0
BolC5t30570H Brassica oleracea HOM05D008819 ORTHO05D003197 3.1e-129 465.3 270 95.2
A06p16240 Brassica napus HOM05D008819 ORTHO05D003197 2.0e-120 436.0 273 88.3
BraA06t24727Z Brassica rapa HOM05D008819 ORTHO05D003197 3.0e-119 432.2 273 88.3
BcaB07g32025 Brassica carinata HOM05D008819 ORTHO05D003197 2.9e-106 389.0 279 82.4
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 1.1e-97 360.5 280 75.0
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 7.1e-97 357.8 280 74.3
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 7.1e-97 357.8 281 73.7
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.7e-90 336.7 274 73.4
BolC3t16044H Brassica oleracea HOM05D008819 ORTHO05D003197 3.6e-85 318.9 194 88.1
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 3.3e-78 295.8 287 68.3
Sp1g17870 Schrenkiella parvula HOM05D008819 ORTHO05D003197 6.2e-77 291.6 280 61.4
BcaB03g14414 Brassica carinata HOM05D008819 ORTHO05D003197 2.2e-74 283.1 285 65.3
BcaB03g14340 Brassica carinata HOM05D008819 ORTHO05D003197 1.9e-73 280.0 285 64.9
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 2.7e-72 276.2 286 57.3
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 1.0e-71 274.2 293 64.2
BcaC01g06727 Brassica carinata HOM05D008819 ORTHO05D003197 7.9e-64 248.1 203 70.0
C03p37510 Brassica napus HOM05D008819 ORTHO05D003197 5.7e-62 241.9 200 71.5
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 5.9e-51 205.3 300 47.7
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 7.7e-51 204.9 302 49.7
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 5.0e-50 202.2 315 45.4
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 8.8e-47 191.4 301 46.5
BcaC03g14371 Brassica carinata HOM05D008819 ORTHO05D003197 1.5e-46 190.7 190 62.1
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.7e-42 177.2 231 50.6
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 9.4e-41 171.4 316 43.4
C02p17840 Brassica napus HOM05D008819 ORTHO05D003197 1.4e-39 167.5 112 82.1
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 1.4e-39 167.5 314 42.7
CARHR020580 Cardamine hirsuta HOM05D008819 ORTHO05D003197 3.0e-39 166.4 168 58.9
A08p16950 Brassica napus HOM05D008819 ORTHO05D003197 2.8e-37 159.8 106 84.0
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 3.7e-37 159.5 293 45.1
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 5.3e-36 155.6 296 43.6
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 1.2e-35 154.5 296 43.9
C06p49830 Brassica napus HOM05D008819 ORTHO05D003197 1.7e-34 150.6 296 43.6
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 1.1e-33 147.9 296 43.2
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 6.1e-32 142.1 299 43.5
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 9.1e-28 128.3 270 39.3
THA.LOC104813240 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.0e-27 127.1 286 37.4
BraA08t33657Z Brassica rapa HOM05D008819 ORTHO05D003197 3.6e-24 116.3 106 66.0
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 1.3e-18 97.8 299 35.8
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.3e-15 87.0 292 33.9
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 2.3e-15 87.0 311 32.5
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 8.9e-15 85.1 296 34.8
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.6e-14 83.6 293 33.8
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.4e-14 83.2 287 34.5
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 7.5e-14 82.0 286 33.9
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 9.8e-14 81.6 208 32.2
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 2.2e-13 80.5 312 33.0
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.4e-12 77.8 293 32.8
CARHR020590 Cardamine hirsuta HOM05D008819 ORTHO05D003197 3.2e-12 76.6 88 72.7
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.0e-10 71.6 334 27.8
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 1.7e-10 70.9 334 27.5
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 5.0e-10 69.3 231 29.0
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 8.6e-10 68.6 303 28.4
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.5e-09 67.8 229 31.9
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 3.3e-09 66.6 233 29.6
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 4.3e-09 66.2 310 29.0
CARHR069790 Cardamine hirsuta HOM05D014797 ORTHO05D016596 5.6e-09 65.9 247 32.0
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 9.5e-09 65.1 309 29.1
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 1.2e-08 64.7 315 30.8
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 3.6e-08 63.2 328 25.6
AT1G76230 Arabidopsis thaliana HOM05D014797 ORTHO05D016596 8.0e-08 62.0 228 31.1
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 6.8e-07 58.9 317 28.7
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 6.8e-07 58.9 330 26.4
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 1.2e-06 58.2 240 28.8
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 5.8e-06 55.8 323 26.0
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 7.5e-06 55.5 306 29.7
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 7.5e-06 55.5 90 46.7
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 7.5e-06 55.5 322 26.1
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 9.8e-06 55.1 322 29.2
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 9.8e-06 55.1 335 23.3
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 9.8e-06 55.1 287 29.6
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 9.8e-06 55.1 338 27.5


User provided reference genes

Program Settings