Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 9.3e-110 400.2 201 100.0
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 7.4e-107 390.6 202 99.0
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 5.7e-99 364.4 195 91.3
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 1.3e-98 363.2 195 91.3
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 4.5e-96 354.8 195 88.7
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 5.9e-96 354.4 195 88.7
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 1.3e-95 353.2 195 88.2
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 1.7e-95 352.8 195 87.7
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 1.7e-95 352.8 195 88.2
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 1.7e-95 352.8 195 88.2
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 2.9e-95 352.1 208 89.9
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 8.5e-95 350.5 196 89.3
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 6.1e-93 344.4 196 87.2
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 7.9e-93 344.0 197 85.8
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 1.0e-92 343.6 201 86.1
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 2.8e-90 335.5 198 81.8
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 1.2e-88 330.1 198 81.3
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 7.7e-88 327.4 197 79.7
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 5.0e-87 324.7 201 80.1
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 6.1e-85 317.8 197 80.7
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 4.5e-80 301.6 195 78.5
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 3.2e-78 295.4 195 77.4
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 8.2e-74 280.8 197 69.5
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 9.1e-73 277.3 199 70.9
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.6e-72 276.6 199 70.4
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 2.0e-72 276.2 199 70.4
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 2.7e-72 275.8 183 73.2
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 7.7e-72 274.2 198 71.2
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 3.8e-71 271.9 199 68.8
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 5.0e-71 271.6 199 70.9
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 8.5e-71 270.8 199 69.8
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 8.5e-71 270.8 197 67.5
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.1e-70 270.4 199 68.8
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 3.2e-70 268.9 199 69.3
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.2e-70 268.9 199 69.3
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 3.2e-70 268.9 199 69.8
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 1.2e-69 266.9 201 67.2
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.6e-69 266.5 199 66.8
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 1.6e-69 266.5 199 66.8
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.1e-69 266.2 197 69.0
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 2.7e-69 265.8 196 65.3
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 2.7e-69 265.8 184 70.1
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.6e-69 265.4 199 68.3
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 3.6e-69 265.4 199 67.8
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 6.1e-69 264.6 197 73.6
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 8.0e-69 264.2 199 68.3
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 8.0e-69 264.2 184 71.2
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 1.0e-68 263.8 196 66.3
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 1.0e-68 263.8 200 64.0
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 1.0e-68 263.8 199 67.3
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 1.0e-68 263.8 199 67.3
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 1.8e-68 263.1 198 64.6
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 1.8e-68 263.1 200 66.5
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 1.8e-68 263.1 200 66.5
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 2.3e-68 262.7 199 67.8
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 2.3e-68 262.7 186 67.7
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 3.0e-68 262.3 199 66.8
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 3.0e-68 262.3 199 66.8
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 3.0e-68 262.3 199 66.3
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 4.0e-68 261.9 199 66.3
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 8.8e-68 260.8 199 65.8
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 1.2e-67 260.4 197 66.5
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 1.5e-67 260.0 198 66.2
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 2.0e-67 259.6 185 67.6
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 5.7e-67 258.1 197 62.9
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 5.7e-67 258.1 197 62.9
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 1.3e-66 256.9 200 64.0
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 1.7e-66 256.5 199 65.3
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 2.8e-66 255.8 201 63.7
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 3.7e-66 255.4 201 62.7
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 4.8e-66 255.0 176 71.0
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.1e-65 253.8 183 69.9
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 1.8e-65 253.1 199 64.8
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 2.4e-65 252.7 181 68.5
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 4.1e-65 251.9 199 65.3
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 7.0e-65 251.1 170 72.4
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 3.5e-64 248.8 197 59.9
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 3.5e-64 248.8 191 62.8
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 4.5e-64 248.4 193 62.7
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 5.9e-64 248.1 199 64.3
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 5.9e-64 248.1 196 62.2
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 1.7e-63 246.5 185 66.5
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 1.7e-63 246.5 197 62.4
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 6.6e-63 244.6 183 67.8
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 1.9e-62 243.0 199 64.3
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 1.9e-62 243.0 183 67.2
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 2.5e-62 242.7 197 62.9
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 2.5e-62 242.7 183 66.7
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 3.3e-62 242.3 197 64.0
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 3.3e-62 242.3 195 64.1
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 4.2e-62 241.9 199 61.3
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 5.5e-62 241.5 197 61.4
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 7.2e-62 241.1 197 61.9
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 7.2e-62 241.1 196 60.2
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 9.5e-62 240.7 199 60.8
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 1.2e-61 240.4 199 64.3
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.2e-61 240.4 197 63.5
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 2.1e-61 239.6 172 66.3
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 2.8e-61 239.2 187 63.6
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 2.8e-61 239.2 170 66.5
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 6.1e-61 238.0 197 61.4
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 1.4e-60 236.9 183 64.5
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 1.8e-60 236.5 197 60.9
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 1.8e-60 236.5 197 60.9
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 4.0e-60 235.3 184 62.5
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 1.2e-59 233.8 197 58.9
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 1.5e-59 233.4 197 67.5
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 1.3e-58 230.3 183 65.0
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 1.7e-58 229.9 195 59.5
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 1.7e-58 229.9 199 57.3
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.7e-58 229.9 169 66.9
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 2.4e-57 226.1 145 74.5
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 1.6e-56 223.4 186 59.7
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 3.8e-55 218.8 183 59.6
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.9e-54 216.5 188 56.4
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.3e-54 215.7 184 58.2
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 3.3e-54 215.7 184 58.2
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 9.5e-54 214.2 186 58.6
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 2.3e-52 209.5 184 56.5
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.5e-51 206.8 200 56.0
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 7.5e-51 204.5 147 69.4
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.7e-50 203.4 150 64.7
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 3.2e-49 199.1 139 71.9
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 4.6e-48 195.3 200 53.5
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 1.3e-47 193.7 137 69.3
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 2.3e-47 193.0 198 49.0
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 6.6e-47 191.4 201 50.7
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 8.6e-47 191.0 185 52.4
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 9.5e-46 187.6 197 53.3
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 2.1e-45 186.4 151 61.6
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 6.2e-45 184.9 151 53.6
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 2.3e-44 183.0 201 47.8
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 2.9e-42 176.0 195 45.1
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 2.7e-40 169.5 109 74.3
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 1.1e-38 164.1 104 78.8
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 1.9e-38 163.3 196 49.0
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 9.5e-38 161.0 197 49.7
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 1.1e-36 157.5 169 47.9
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 6.4e-34 148.3 120 63.3
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.4e-33 147.1 121 63.6
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 6.6e-31 138.3 195 39.0
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 6.6e-31 138.3 205 39.5
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 8.6e-31 137.9 171 42.7
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 8.6e-31 137.9 85 72.9
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 3.1e-28 129.4 123 55.3
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 6.8e-28 128.3 120 52.5
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 5.8e-27 125.2 120 50.8
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.7e-24 116.3 80 68.8
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 5.3e-20 102.1 61 73.8
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.2e-19 100.9 83 67.5
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 9.3e-17 91.3 105 41.0
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.5e-14 84.0 66 68.2
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.1e-12 77.8 68 52.9
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 1.1e-12 77.8 64 56.2
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 5.3e-12 75.5 88 45.5
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 6.0e-08 62.0 47 63.8


User provided reference genes

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