Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32014 Brassica carinata HOM05D001206 ORTHO05D005935 8.9e-44 179.9 90 100.0
BcaB07g32016 Brassica carinata HOM05D001206 ORTHO05D005935 8.9e-44 179.9 90 100.0
BcaC05g25894 Brassica carinata HOM05D001206 ORTHO05D005935 8.9e-44 179.9 90 100.0
C05p18490 Brassica napus HOM05D001206 ORTHO05D005935 8.9e-44 179.9 90 100.0
BcaC04g22258 Brassica carinata HOM05D001206 ORTHO05D005935 4.0e-36 154.5 90 88.9
BcaC03g15127 Brassica carinata HOM05D001206 ORTHO05D005935 7.5e-35 150.2 90 88.9
A09p24920 Brassica napus HOM05D001206 ORTHO05D005935 2.0e-27 125.6 66 93.9
BraA09t38080Z Brassica rapa HOM05D001206 ORTHO05D005935 2.0e-27 125.6 66 93.9
BcaB07g30635 Brassica carinata HOM05D001206 ORTHO05D005935 9.9e-27 123.2 66 92.4
BcaC04g21423 Brassica carinata HOM05D001206 ORTHO05D005935 3.7e-26 121.3 66 90.9
C09p31950 Brassica napus HOM05D001206 ORTHO05D005935 3.7e-26 121.3 66 90.9
BolC9t56049H Brassica oleracea HOM05D001206 ORTHO05D005935 3.7e-26 121.3 66 90.9
Thhalv10012940m.g Eutrema salsugineum HOM05D001206 ORTHO05D005935 4.9e-26 120.9 66 90.9
Sp2g14920 Schrenkiella parvula HOM05D001206 ORTHO05D005935 1.1e-25 119.8 66 89.4
Carub.0005s0348 Capsella rubella HOM05D001206 ORTHO05D005935 2.4e-25 118.6 66 87.9
AT3G25660 Arabidopsis thaliana HOM05D001206 ORTHO05D005935 9.2e-25 116.7 66 87.9
CARHR260190 Cardamine hirsuta HOM05D001206 ORTHO05D005935 1.2e-24 116.3 66 87.9
Aa31LG2G6650 Aethionema arabicum HOM05D001206 ORTHO05D005935 3.5e-24 114.8 66 86.4
AL5G14200 Arabidopsis lyrata HOM05D001206 ORTHO05D005935 3.5e-24 114.8 65 87.7
CARHR288520 Cardamine hirsuta HOM05D001206 ORTHO05D005935 3.0e-23 111.7 64 85.9
BolC3t19603H Brassica oleracea HOM05D000152 ORTHO05D000609 8.6e-23 110.2 66 84.8
THA.LOC104824040 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 1.9e-22 109.0 66 77.3
BcaC01g01682 Brassica carinata HOM05D007004 ORTHO05D009040 2.5e-22 108.6 66 83.3
THA.LOC104805240 Tarenaya hassleriana HOM05D001206 ORTHO05D005935 9.5e-22 106.7 60 86.7
Thecc.10G113900 Theobroma cacao HOM05D001206 ORTHO05D005935 2.1e-21 105.5 62 82.3
EL10Ac9g21024 Beta vulgaris HOM05D001206 ORTHO05D005935 2.8e-21 105.1 64 76.6
GSVIVG01020788001 Vitis vinifera HOM05D001206 ORTHO05D005935 2.8e-21 105.1 68 76.5
BcaB06g27855 Brassica carinata HOM05D001206 ORTHO05D005935 3.6e-21 104.8 66 83.3
CANSAT64G1074 Cannabis sativa HOM05D001206 ORTHO05D005935 6.2e-21 104.0 62 82.3
PGR142G3322 Punica granatum HOM05D001206 ORTHO05D005935 1.1e-20 103.2 60 83.3
Atru.chr6.3565 Acer truncatum HOM05D001206 ORTHO05D005935 1.4e-20 102.8 62 77.4
Gohir.A06G169500 Gossypium hirsutum HOM05D001206 ORTHO05D005935 1.4e-20 102.8 65 75.4
Gohir.D06G177200 Gossypium hirsutum HOM05D001206 ORTHO05D005935 1.4e-20 102.8 65 75.4
Gorai.N008100 Gossypium raimondii HOM05D001206 ORTHO05D005935 1.4e-20 102.8 65 75.4
AUR62032754 Chenopodium quinoa HOM05D001206 ORTHO05D005935 1.8e-20 102.4 63 74.6
QL08p043357 Quercus lobata HOM05D001206 ORTHO05D005935 2.4e-20 102.1 62 79.0
Cc05_g09120 Coffea canephora HOM05D001206 ORTHO05D005935 3.1e-20 101.7 60 81.7
Nn6g34432 Nelumbo nucifera HOM05D001206 ORTHO05D005935 3.1e-20 101.7 60 81.7
Ah.01g016080 Amaranthus hybridus HOM05D001206 ORTHO05D005935 4.0e-20 101.3 64 73.4
MSTRG.12835 Avicennia marina HOM05D001206 ORTHO05D005935 4.0e-20 101.3 60 81.7
Haze_13465 Corylus avellana HOM05D001206 ORTHO05D005935 4.0e-20 101.3 65 76.9
Migut.H02113 Erythranthe guttata HOM05D001206 ORTHO05D005935 4.0e-20 101.3 66 71.2
Hma1.2p1_3358F.1_g335550 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 4.0e-20 101.3 60 80.0
MD09G1156700 Malus domestica HOM05D001206 ORTHO05D005935 4.0e-20 101.3 62 79.0
MD17G1143200 Malus domestica HOM05D001206 ORTHO05D005935 4.0e-20 101.3 62 79.0
vmacro12422 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 4.0e-20 101.3 64 75.0
vmacro12423 Vaccinium macrocarpon HOM05D001206 ORTHO05D005935 4.0e-20 101.3 64 75.0
TAR629G1684 Trochodendron aralioides HOM05D001206 ORTHO05D005935 5.2e-20 100.9 62 79.0
ECA233G3159 Erigeron canadensis HOM05D001206 ORTHO05D005935 6.8e-20 100.5 62 74.2
FAN14G2675 Fragaria x ananassa HOM05D001206 ORTHO05D005935 6.8e-20 100.5 62 77.4
Eucgr.K01190 Eucalyptus grandis HOM05D001206 ORTHO05D005935 8.9e-20 100.1 62 79.0
Ciclev10014821m.g Citrus clementina HOM05D001206 ORTHO05D005935 1.2e-19 99.8 62 79.0
Potri.018G086350 Populus trichocarpa HOM05D001206 ORTHO05D005935 1.2e-19 99.8 60 81.7
unitig_22.g6850 Utricularia gibba HOM05D001206 ORTHO05D005935 1.2e-19 99.8 60 78.3
CSS0050390 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 2.0e-19 99.0 60 80.0
AUR62004905 Chenopodium quinoa HOM05D001206 ORTHO05D005935 2.0e-19 99.0 60 76.7
Manes.01G129100 Manihot esculenta HOM05D001206 ORTHO05D005935 2.0e-19 99.0 66 72.7
Peaxi162Scf00035g03126 Petunia axillaris HOM05D001206 ORTHO05D005935 2.0e-19 99.0 60 76.7
CiPaw.03G196100 Carya illinoinensis HOM05D001206 ORTHO05D005935 2.6e-19 98.6 62 75.8
Prupe.3G169900 Prunus persica HOM05D001206 ORTHO05D005935 2.6e-19 98.6 62 77.4
RcHm_v2.0_Chr2g0150631 Rosa chinensis HOM05D001206 ORTHO05D005935 2.6e-19 98.6 62 77.4
ClCG09G022260 Citrullus lanatus HOM05D001206 ORTHO05D005935 3.4e-19 98.2 62 79.0
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 4.4e-19 97.8 62 79.0
HanXRQChr13g0387351 Helianthus annuus HOM05D001206 ORTHO05D005935 4.4e-19 97.8 62 72.6
arahy.Tifrunner.gnm1.ann1.DXFN4R Arachis hypogaea HOM05D001206 ORTHO05D005935 5.8e-19 97.4 63 71.4
Cpa.g.sc139.29 Carica papaya HOM05D001206 ORTHO05D005935 5.8e-19 97.4 62 74.2
Rhsim06G0124000 Rhododendron simsii HOM05D001206 ORTHO05D005935 7.6e-19 97.1 60 75.0
arahy.Tifrunner.gnm1.ann1.BZT8G9 Arachis hypogaea HOM05D001206 ORTHO05D005935 1.3e-18 96.3 62 72.6
TWI38G0487 Tripterygium wilfordii HOM05D001206 ORTHO05D005935 1.3e-18 96.3 60 75.0
Aqoxy3G00674 Aquilegia oxysepala HOM05D001206 ORTHO05D005935 1.7e-18 95.9 62 71.0
CAN.G1191.9 Capsicum annuum HOM05D001206 ORTHO05D005935 1.7e-18 95.9 60 75.0
SalBow7G4591 Salvia bowleyana HOM05D001206 ORTHO05D005935 1.7e-18 95.9 62 71.0
PSO017G2524 Papaver somniferum HOM05D001206 ORTHO05D005935 2.2e-18 95.5 62 71.0
Ca_14632_v3 Cicer arietinum L. HOM05D001206 ORTHO05D005935 3.8e-18 94.7 60 73.3
Glyma.08G311400 Glycine max HOM05D001206 ORTHO05D005935 3.8e-18 94.7 60 76.7
BcaB07g30259 Brassica carinata HOM05D001206 ORTHO05D005935 4.9e-18 94.4 56 82.1
Oeu032122.1 Olea europaea HOM05D001206 ORTHO05D005935 4.9e-18 94.4 60 78.3
Psat5g186880 Pisum sativum HOM05D001206 ORTHO05D005935 4.9e-18 94.4 60 73.3
Gorai.N005800 Gossypium raimondii HOM05D001206 ORTHO05D005935 6.4e-18 94.0 65 72.3
Lsat_1_v5_gn_8_31840 Lactuca sativa HOM05D001206 ORTHO05D005935 6.4e-18 94.0 62 72.6
Medtr3g048950 Medicago truncatula HOM05D001206 ORTHO05D005935 6.4e-18 94.0 60 73.3
Solyc10g007840.3 Solanum lycopersicum HOM05D001206 ORTHO05D005935 6.4e-18 94.0 60 73.3
Sopen10g003740 Solanum pennellii HOM05D001206 ORTHO05D005935 6.4e-18 94.0 60 73.3
Actinidia12826 Actinidia chinensis HOM05D001206 ORTHO05D005935 8.4e-18 93.6 55 81.8
ATR1096G083 Amborella trichopoda HOM05D001206 ORTHO05D005935 8.4e-18 93.6 60 73.3
VMungo0540G0597 Vigna mungo HOM05D001206 ORTHO05D005935 8.4e-18 93.6 60 75.0
Actinidia11180 Actinidia chinensis HOM05D001206 ORTHO05D005935 1.1e-17 93.2 61 73.8
Phvul.006G036200 Phaseolus vulgaris HOM05D001206 ORTHO05D005935 1.1e-17 93.2 60 75.0
AagrBONN_evm.TU.Sc2ySwM_368.1898 Anthoceros agrestis HOM05D001206 ORTHO05D005935 1.4e-17 92.8 64 67.2
PSO478G1473 Papaver somniferum HOM05D001206 ORTHO05D005935 1.4e-17 92.8 60 73.3
Lalb_Chr15g0080441 Lupinus albus HOM05D001206 ORTHO05D005935 2.4e-17 92.0 60 75.0
TPR.G13547 Trifolium pratense HOM05D001206 ORTHO05D005935 3.2e-17 91.7 60 73.3
MELO3C014457.2 Cucumis melo HOM05D001206 ORTHO05D005935 4.2e-17 91.3 68 72.1
Nitab4.5_0002027g0090 Nicotiana tabacum HOM05D001206 ORTHO05D005935 4.2e-17 91.3 77 61.0
Pp3c27_1950 Physcomitrium patens HOM05D001206 ORTHO05D005935 3.5e-16 88.2 65 69.2
CDE05G3011 Ceratophyllum demersum HOM05D001206 ORTHO05D005935 7.8e-16 87.0 60 68.3
Sabra18G0074600 Salix brachista HOM05D003301 ORTHO05D003665 1.0e-15 86.7 87 56.3
Pp3c16_16670 Physcomitrium patens HOM05D001206 ORTHO05D005935 1.7e-15 85.9 65 66.2
SEGI_06909 Sequoiadendron giganteum HOM05D001206 ORTHO05D005935 3.0e-15 85.1 59 62.7
Mapoly0029s0077 Marchantia polymorpha HOM05D001206 ORTHO05D005935 1.1e-14 83.2 54 72.2
HPP92_002350 Vanilla planifolia HOM05D001206 ORTHO05D005935 1.5e-14 82.8 51 78.4
SGA_v2.0_scaffold4G02113 Striga asiatica HOM05D001206 ORTHO05D005935 1.1e-12 76.6 60 61.7
CBR_g12438 Chara braunii HOM05D001206 ORTHO05D005935 1.8e-12 75.9 51 70.6
Lj6g0018418 Lotus japonicus HOM05D001206 ORTHO05D005935 9.0e-12 73.6 62 62.9
DCAR_013291 Daucus carota HOM05D001206 ORTHO05D005935 1.2e-11 73.2 39 89.7
FAN02G0831 Fragaria x ananassa HOM05D001206 ORTHO05D005935 1.5e-11 72.8 67 55.2
MBI15_g31580_MAGBIO Magnolia biondii HOM05D001433 ORTHO05D011977 2.0e-11 72.4 41 82.9
Hma1.2p1_0178F.1_g078230 Hydrangea macrophylla HOM05D001206 ORTHO05D005935 3.4e-11 71.6 59 62.7
CSS0014076 Camellia sinensis var. sinensis HOM05D001206 ORTHO05D005935 7.6e-11 70.5 40 85.0
Lj1A587G24 Lonicera japonica HOM05D001206 ORTHO05D005935 9.9e-11 70.1 41 80.5
MBI05_g35447_MAGBIO Magnolia biondii HOM05D001206 ORTHO05D005935 1.7e-10 69.3 38 84.2
Hund07738 Selenicereus undatus HOM05D001206 ORTHO05D005935 2.2e-10 68.9 41 75.6
MBI08_g05402_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 3.2e-09 65.1 39 76.9
Nitab4.5_0001402g0110 Nicotiana tabacum HOM05D001206 ORTHO05D005935 7.1e-09 63.9 38 76.3
Nitab4.5_0001402g0160 Nicotiana tabacum HOM05D001206 ORTHO05D005935 7.1e-09 63.9 38 76.3
Cre10.g439400 Chlamydomonas reinhardtii HOM05D001206 ORTHO05D005935 1.6e-08 62.8 57 56.1
Pp3s32_288 Physcomitrium patens HOM05D001206 ORTHO05D005935 1.6e-08 62.8 51 56.9
HanXRQChr04g0113591 Helianthus annuus HOM05D001206 ORTHO05D015096 4.6e-08 61.2 38 73.7
PGSC0003DMG402021239 Solanum tuberosum HOM05D001206 ORTHO05D005935 4.6e-08 61.2 39 74.4
MBI04_g41030_MAGBIO Magnolia biondii HOM05D000078 ORTHO05D000025 1.7e-07 59.3 34 79.4
SMO118G0181 Selaginella moellendorffii HOM05D001206 ORTHO05D005935 2.3e-07 58.9 41 68.3
Gorai.010G208200 Gossypium raimondii HOM05D001206 ORTHO05D005935 8.7e-07 57.0 39 74.4
PRCOL_00000262 Prasinoderma coloniale HOM05D001206 ORTHO05D005935 1.1e-06 56.6 63 47.6
MCO01G356 Micromonas commoda HOM05D001206 ORTHO05D005935 2.5e-06 55.5 49 55.1
Haze_27080 Corylus avellana HOM05D001206 ORTHO05D005935 7.3e-06 53.9 61 45.9


User provided reference genes

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