Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25886 Brassica carinata HOM05D001233 ORTHO05D032176 2.2e-37 158.3 70 100.0
A03p65520 Brassica napus HOM05D001233 ORTHO05D032176 5.7e-30 133.7 64 93.8
BolC1t02500H Brassica oleracea HOM05D001233 ORTHO05D032176 1.4e-25 119.0 70 80.0
AT3G17940 Arabidopsis thaliana HOM05D001233 ORTHO05D001233 2.3e-15 85.1 55 70.9
Thhalv10021070m.g Eutrema salsugineum HOM05D001233 ORTHO05D001233 5.2e-15 84.0 55 69.1
AL3G31110 Arabidopsis lyrata HOM05D001233 ORTHO05D001233 6.7e-15 83.6 55 70.9
Sp3g16070 Schrenkiella parvula HOM05D001233 ORTHO05D001233 8.8e-15 83.2 55 67.3
BcaB04g20804 Brassica carinata HOM05D001233 ORTHO05D001233 1.5e-14 82.4 55 67.3
BcaB06g25862 Brassica carinata HOM05D001233 ORTHO05D001233 1.5e-14 82.4 55 69.1
BraA01t03710Z Brassica rapa HOM05D001233 ORTHO05D001233 2.6e-14 81.6 53 69.8
Carub.0003s1767 Capsella rubella HOM05D001233 ORTHO05D001233 2.6e-14 81.6 55 69.1
BraA05t22017Z Brassica rapa HOM05D001233 ORTHO05D001233 1.3e-13 79.3 55 67.3
BcaC09g48757 Brassica carinata HOM05D001233 ORTHO05D001233 1.7e-13 79.0 55 65.5
C01p46220 Brassica napus HOM05D001233 ORTHO05D001233 1.7e-13 79.0 55 65.5
BolC1t04583H Brassica oleracea HOM05D001233 ORTHO05D001233 1.7e-13 79.0 55 65.5
BcaC05g28731 Brassica carinata HOM05D001233 ORTHO05D001233 2.8e-13 78.2 55 65.5
C05p48340 Brassica napus HOM05D001233 ORTHO05D001233 2.8e-13 78.2 55 65.5
BolC5t33568H Brassica oleracea HOM05D001233 ORTHO05D001233 2.8e-13 78.2 55 65.5
THA.LOC104820346 Tarenaya hassleriana HOM05D001233 ORTHO05D001233 4.8e-13 77.4 55 65.5
A05p31850 Brassica napus HOM05D001233 ORTHO05D001233 8.2e-13 76.6 55 65.5
CARHR093270 Cardamine hirsuta HOM05D001233 ORTHO05D001233 8.2e-13 76.6 55 63.6
Aa31LG8G4810 Aethionema arabicum HOM05D001233 ORTHO05D001233 1.7e-10 68.9 56 58.9
Prupe.5G234200 Prunus persica HOM05D001233 ORTHO05D001233 1.1e-09 66.2 55 58.2
Migut.O00772 Erythranthe guttata HOM05D001233 ORTHO05D001233 1.5e-09 65.9 55 54.5
Peaxi162Scf00314g00323 Petunia axillaris HOM05D001233 ORTHO05D001233 1.5e-09 65.9 55 58.2
QL10p029836 Quercus lobata HOM05D001233 ORTHO05D001233 1.5e-09 65.9 55 58.2
MD14G1236900 Malus domestica HOM05D001233 ORTHO05D001233 1.9e-09 65.5 55 56.4
FvH4_5g17440 Fragaria vesca HOM05D001233 ORTHO05D001233 2.5e-09 65.1 55 54.5
FAN08G3202 Fragaria x ananassa HOM05D001233 ORTHO05D001233 2.5e-09 65.1 55 54.5
FAN18G3927 Fragaria x ananassa HOM05D001233 ORTHO05D001233 2.5e-09 65.1 55 54.5
MD06G1227800 Malus domestica HOM05D001233 ORTHO05D001233 2.5e-09 65.1 55 54.5
RcHm_v2.0_Chr7g0178251 Rosa chinensis HOM05D001233 ORTHO05D001233 2.5e-09 65.1 55 54.5
Solyc03g118650.3 Solanum lycopersicum HOM05D001233 ORTHO05D001233 3.2e-09 64.7 55 56.4
Sopen03g037610 Solanum pennellii HOM05D001233 ORTHO05D001233 3.2e-09 64.7 55 56.4
Sopen08g012510 Solanum pennellii HOM05D001233 ORTHO05D001233 3.2e-09 64.7 55 56.4
PGSC0003DMG400005754 Solanum tuberosum HOM05D001233 ORTHO05D001233 3.2e-09 64.7 55 56.4
CSS0006371 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 5.5e-09 63.9 55 58.2
CSS0029153 Camellia sinensis var. sinensis HOM05D001233 ORTHO05D001233 5.5e-09 63.9 55 58.2
ECA238G3057 Erigeron canadensis HOM05D001233 ORTHO05D001233 5.5e-09 63.9 55 58.2
HanXRQChr14g0433261 Helianthus annuus HOM05D001233 ORTHO05D001233 5.5e-09 63.9 55 60.0
CiPaw.15G143900 Carya illinoinensis HOM05D001233 ORTHO05D001233 7.2e-09 63.5 55 58.2
Sc05g0001190 Simmondsia chinensis HOM05D001233 ORTHO05D001233 7.2e-09 63.5 55 56.4
Haze_18873 Corylus avellana HOM05D001233 ORTHO05D001233 9.4e-09 63.2 55 50.9
Nitab4.5_0012026g0020 Nicotiana tabacum HOM05D001233 ORTHO05D001233 9.4e-09 63.2 55 56.4
Nitab4.5_0013135g0020 Nicotiana tabacum HOM05D001233 ORTHO05D001233 9.4e-09 63.2 55 56.4
Sabra12G0032100 Salix brachista HOM05D001233 ORTHO05D001233 9.4e-09 63.2 55 54.5
Sed0023736 Sechium edule HOM05D001233 ORTHO05D001233 9.4e-09 63.2 55 56.4
Aqoxy3G04086 Aquilegia oxysepala HOM05D001233 ORTHO05D001233 1.2e-08 62.8 55 54.5
arahy.Tifrunner.gnm1.ann1.95KH60 Arachis hypogaea HOM05D001233 ORTHO05D001233 1.2e-08 62.8 55 54.5
arahy.Tifrunner.gnm1.ann1.B84EEW Arachis hypogaea HOM05D001233 ORTHO05D001233 1.2e-08 62.8 55 54.5
DCAR_028347 Daucus carota HOM05D001233 ORTHO05D001233 1.2e-08 62.8 56 60.7
Rhsim08G0127100 Rhododendron simsii HOM05D001233 ORTHO05D001233 1.2e-08 62.8 55 54.5
vmacro18158 Vaccinium macrocarpon HOM05D001233 ORTHO05D001233 1.2e-08 62.8 55 54.5
Potri.012G045875 Populus trichocarpa HOM05D001233 ORTHO05D001233 1.6e-08 62.4 55 54.5
MELO3C017363.2 Cucumis melo HOM05D001233 ORTHO05D001233 2.1e-08 62.0 55 56.4
CsaV3_1G004410 Cucumis sativus L. HOM05D001233 ORTHO05D001233 2.1e-08 62.0 55 56.4
Eucgr.B00995 Eucalyptus grandis HOM05D001233 ORTHO05D001233 2.1e-08 62.0 56 58.9
FAN04G1457 Fragaria x ananassa HOM05D001233 ORTHO05D001233 2.1e-08 62.0 55 52.7
FAN13G0800 Fragaria x ananassa HOM05D001233 ORTHO05D001233 2.1e-08 62.0 55 52.7
Lalb_Chr14g0370601 Lupinus albus HOM05D001233 ORTHO05D001233 2.1e-08 62.0 55 52.7
Lalb_Chr24g0398161 Lupinus albus HOM05D001233 ORTHO05D001233 2.1e-08 62.0 55 54.5
Psat1g030840 Pisum sativum HOM05D001233 ORTHO05D001233 2.1e-08 62.0 55 50.9
Hund02844 Selenicereus undatus HOM05D001233 ORTHO05D001233 2.1e-08 62.0 55 54.5
VMungo0464G1448 Vigna mungo HOM05D001233 ORTHO05D001233 2.1e-08 62.0 55 50.9
Lj5A158T78 Lonicera japonica HOM05D001233 ORTHO05D001233 2.7e-08 61.6 55 56.4
Medtr6g069630 Medicago truncatula HOM05D001233 ORTHO05D001233 2.7e-08 61.6 55 50.9
Oeu061238.1 Olea europaea HOM05D001233 ORTHO05D001233 2.7e-08 61.6 51 62.7
SalBow1G7573 Salvia bowleyana HOM05D001233 ORTHO05D001233 2.7e-08 61.6 55 58.2
vmacro17773 Vaccinium macrocarpon HOM05D001233 ORTHO05D001233 2.7e-08 61.6 55 54.5
GSVIVG01008450001 Vitis vinifera HOM05D001233 ORTHO05D001233 2.7e-08 61.6 55 54.5
TPR.G8648 Trifolium pratense HOM05D001233 ORTHO05D001233 3.6e-08 61.2 55 49.1
C07p43150 Brassica napus HOM05D001233 ORTHO05D013029 4.7e-08 60.8 30 93.3
BolC3t16305H Brassica oleracea HOM05D001233 ORTHO05D013029 4.7e-08 60.8 30 93.3
BolC7t44841H Brassica oleracea HOM05D001233 ORTHO05D013029 4.7e-08 60.8 30 93.3
AUR62011992 Chenopodium quinoa HOM05D001233 ORTHO05D001233 4.7e-08 60.8 55 52.7
AUR62032311 Chenopodium quinoa HOM05D001233 ORTHO05D001233 4.7e-08 60.8 55 52.7
BraA05t21562Z Brassica rapa HOM05D001233 ORTHO05D013029 6.1e-08 60.5 30 90.0
ClCG06G014260 Citrullus lanatus HOM05D001233 ORTHO05D001233 6.1e-08 60.5 55 56.4
Glyma.07G102900 Glycine max HOM05D001233 ORTHO05D001233 6.1e-08 60.5 55 49.1
Phvul.004G150200 Phaseolus vulgaris HOM05D001233 ORTHO05D001233 6.1e-08 60.5 55 50.9
TWI60G1513 Tripterygium wilfordii HOM05D001233 ORTHO05D001233 6.1e-08 60.5 55 56.4
CAN.G843.51 Capsicum annuum HOM05D001233 ORTHO05D001233 8.0e-08 60.1 55 52.7
Manes.14G171800 Manihot esculenta HOM05D001233 ORTHO05D001233 8.0e-08 60.1 55 52.7
EL10Ac5g10524 Beta vulgaris HOM05D001233 ORTHO05D001233 1.0e-07 59.7 55 49.1
CANSAT80G1969 Cannabis sativa HOM05D001233 ORTHO05D001233 1.0e-07 59.7 55 52.7
Lj2g0003443 Lotus japonicus HOM05D001233 ORTHO05D001233 1.0e-07 59.7 55 47.3
BolC6t36560H Brassica oleracea HOM05D001233 ORTHO05D013029 1.4e-07 59.3 30 90.0
Ciclev10008981m.g Citrus clementina HOM05D001233 ORTHO05D001233 1.4e-07 59.3 56 55.4
Cc04_g06190 Coffea canephora HOM05D001233 ORTHO05D001233 1.8e-07 58.9 55 56.4
Glyma.U031515 Glycine max HOM05D001233 ORTHO05D001233 1.8e-07 58.9 55 49.1
Oeu031765.1 Olea europaea HOM05D001233 ORTHO05D001233 1.8e-07 58.9 55 54.5
Cpa.g.sc3.391 Carica papaya HOM05D001233 ORTHO05D001233 2.3e-07 58.5 55 52.7
Lj2g0002731 Lotus japonicus HOM05D001233 ORTHO05D001233 2.3e-07 58.5 55 49.1
PGR083G1970 Punica granatum HOM05D001233 ORTHO05D001233 2.3e-07 58.5 56 53.6
Hund09517 Selenicereus undatus HOM05D001233 ORTHO05D001233 2.3e-07 58.5 58 48.3
Atru.chr9.1711 Acer truncatum HOM05D001233 ORTHO05D001233 3.0e-07 58.2 56 57.1
MSTRG.9307 Avicennia marina HOM05D001233 ORTHO05D001233 3.0e-07 58.2 55 54.5
TAR622G1286 Trochodendron aralioides HOM05D001233 ORTHO05D001233 3.0e-07 58.2 56 57.1
Ciclev10012137m.g Citrus clementina HOM05D001233 ORTHO05D001233 4.0e-07 57.8 56 53.6
Ca_25337_v3 Cicer arietinum L. HOM05D001233 ORTHO05D001233 5.2e-07 57.4 55 49.1
Ca_29639_v3 Cicer arietinum L. HOM05D001233 ORTHO05D001233 5.2e-07 57.4 55 49.1
Manes.01G118100 Manihot esculenta HOM05D001233 ORTHO05D001233 5.2e-07 57.4 56 51.8
Nn4g24259 Nelumbo nucifera HOM05D001233 ORTHO05D001233 5.2e-07 57.4 56 55.4
SGA_v2.0_scaffold124G33647 Striga asiatica HOM05D001233 ORTHO05D001233 5.2e-07 57.4 55 50.9
Nn3g18297 Nelumbo nucifera HOM05D001233 ORTHO05D001233 8.8e-07 56.6 56 55.4
MBI12_g36339_MAGBIO Magnolia biondii HOM05D001233 ORTHO05D001233 1.2e-06 56.2 55 54.5
Thecc.03G055200 Theobroma cacao HOM05D001233 ORTHO05D001233 2.0e-06 55.5 55 52.7
unitig_27.g24922 Utricularia gibba HOM05D001233 ORTHO05D001233 2.0e-06 55.5 55 52.7
COL.COLO4_04911 Corchorus olitorius HOM05D001233 ORTHO05D001233 3.3e-06 54.7 55 50.9
Potri.017G129300 Populus trichocarpa HOM05D001233 ORTHO05D001233 3.3e-06 54.7 56 50.0
Hma1.2p1_0158F.1_g070220 Hydrangea macrophylla HOM05D001233 ORTHO05D001233 4.4e-06 54.3 56 55.4
Atru.chr1.1902 Acer truncatum HOM05D001233 ORTHO05D001233 5.7e-06 53.9 56 51.8
Glyma.09G174902 Glycine max HOM05D001233 ORTHO05D001233 5.7e-06 53.9 55 45.5
Lj9C476G16 Lonicera japonica HOM05D001233 ORTHO05D001233 5.7e-06 53.9 55 49.1
SEGI_06084 Sequoiadendron giganteum HOM05D001233 ORTHO05D001233 5.7e-06 53.9 55 49.1
Lsat_1_v5_gn_2_11861 Lactuca sativa HOM05D001233 ORTHO05D001233 7.5e-06 53.5 51 54.9
Sabra17G0107700 Salix brachista HOM05D001233 ORTHO05D001233 7.5e-06 53.5 56 50.0
HPP92_010104 Vanilla planifolia HOM05D001233 ORTHO05D001233 7.5e-06 53.5 51 51.0


User provided reference genes

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