Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25818 Brassica carinata HOM05D000078 ORTHO05D094471 1.7e-57 225.7 109 100.0
A06p15360 Brassica napus HOM05D000078 ORTHO05D000025 1.5e-13 79.7 48 83.3
BraA06t24649Z Brassica rapa HOM05D000078 ORTHO05D000025 5.8e-13 77.8 48 81.2
C05p17590 Brassica napus HOM05D000078 ORTHO05D000025 7.5e-13 77.4 48 81.2
BolC5t30464H Brassica oleracea HOM05D000078 ORTHO05D000025 7.5e-13 77.4 48 81.2
BcaB07g31936 Brassica carinata HOM05D000078 ORTHO05D000025 2.4e-11 72.4 49 77.6
BcaB03g14459 Brassica carinata HOM05D000078 ORTHO05D000025 4.1e-11 71.6 48 70.8
BraA09t41325Z Brassica rapa HOM05D000112 ORTHO05D000025 4.1e-11 71.6 48 72.9
BcaB03g12927 Brassica carinata HOM05D000078 ORTHO05D000025 1.2e-10 70.1 48 70.8
BcaC07g41269 Brassica carinata HOM05D000078 ORTHO05D000025 2.0e-10 69.3 48 70.8
A08p29940 Brassica napus HOM05D000078 ORTHO05D000025 2.0e-10 69.3 48 68.8
A09p59470 Brassica napus HOM05D000078 ORTHO05D000025 2.0e-10 69.3 48 70.8
C08p42760 Brassica napus HOM05D000078 ORTHO05D000025 2.0e-10 69.3 48 70.8
BolC8t51832H Brassica oleracea HOM05D000078 ORTHO05D000025 2.0e-10 69.3 48 70.8
BraA08t34929Z Brassica rapa HOM05D000078 ORTHO05D000025 2.0e-10 69.3 48 68.8
BolC8t49551H Brassica oleracea HOM05D000078 ORTHO05D000025 4.6e-10 68.2 48 68.8
Thhalv10009812m.g Eutrema salsugineum HOM05D000078 ORTHO05D000025 7.8e-10 67.4 47 68.1
CARHR019810 Cardamine hirsuta HOM05D000078 ORTHO05D000025 1.0e-09 67.0 48 66.7
Sp1g17110 Schrenkiella parvula HOM05D000078 ORTHO05D000025 1.3e-09 66.6 48 66.7
AT1G19210 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 2.3e-09 65.9 47 66.0
BcaC07g38986 Brassica carinata HOM05D000078 ORTHO05D000025 3.0e-09 65.5 48 64.6
BcaC07g38989 Brassica carinata HOM05D000078 ORTHO05D000025 3.0e-09 65.5 48 64.6
C08p19300 Brassica napus HOM05D000078 ORTHO05D000025 3.0e-09 65.5 48 64.6
Potri.018G047300 Populus trichocarpa HOM05D000078 ORTHO05D000025 5.0e-09 64.7 50 64.0
Psat1g136600 Pisum sativum HOM05D000078 ORTHO05D000025 1.1e-08 63.5 48 62.5
A07p29160 Brassica napus HOM05D000078 ORTHO05D000025 1.9e-08 62.8 48 62.5
BraA07t30555Z Brassica rapa HOM05D000078 ORTHO05D000025 1.9e-08 62.8 48 62.5
Sabra18G0045500 Salix brachista HOM05D000078 ORTHO05D000025 2.5e-08 62.4 46 67.4
Aa31LG7G3920 Aethionema arabicum HOM05D000078 ORTHO05D000025 3.3e-08 62.0 43 67.4
AL1G31790 Arabidopsis lyrata HOM05D000078 ORTHO05D000025 3.3e-08 62.0 47 63.8
CANSAT56G4161 Cannabis sativa HOM05D000078 ORTHO05D000025 3.3e-08 62.0 48 62.5
Carub.0001s1881 Capsella rubella HOM05D000078 ORTHO05D000025 3.3e-08 62.0 48 60.4
Sabra06G0168200 Salix brachista HOM05D000078 ORTHO05D000025 7.3e-08 60.8 46 63.0
Ah.09g229160 Amaranthus hybridus HOM05D000078 ORTHO05D000025 1.2e-07 60.1 46 65.2
Ca_02231_v3 Cicer arietinum L. HOM05D000078 ORTHO05D000025 1.2e-07 60.1 53 54.7
Duzib187G0649 Durio zibethinus HOM05D000078 ORTHO05D000025 1.2e-07 60.1 48 60.4
GSVIVG01035502001 Vitis vinifera HOM05D000078 ORTHO05D000025 1.2e-07 60.1 46 63.0
Ca_11748_v3 Cicer arietinum L. HOM05D000078 ORTHO05D000025 1.6e-07 59.7 52 53.8
Potri.006G218200 Populus trichocarpa HOM05D000078 ORTHO05D000025 1.6e-07 59.7 46 60.9
FAN26G2187 Fragaria x ananassa HOM05D000078 ORTHO05D000025 2.1e-07 59.3 46 63.0
Medtr2g043040 Medicago truncatula HOM05D000078 ORTHO05D000025 2.1e-07 59.3 51 54.9
TWI63G0050 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 2.1e-07 59.3 48 62.5
Aa31LG4G5140 Aethionema arabicum HOM05D000078 ORTHO05D000025 2.8e-07 58.9 46 60.9
BcaB02g06973 Brassica carinata HOM05D000078 ORTHO05D000025 2.8e-07 58.9 48 58.3
MD15G1221100 Malus domestica HOM05D000078 ORTHO05D000025 2.8e-07 58.9 48 58.3
PSO386G0086 Papaver somniferum HOM05D000078 ORTHO05D000025 2.8e-07 58.9 46 60.9
Prupe.7G194400 Prunus persica HOM05D000078 ORTHO05D000025 2.8e-07 58.9 48 60.4
TWI34G1224 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 2.8e-07 58.9 48 62.5
Ca_02230_v3 Cicer arietinum L. HOM05D000078 ORTHO05D000025 3.6e-07 58.5 53 52.8
Manes.03G044100 Manihot esculenta HOM05D000078 ORTHO05D000025 3.6e-07 58.5 49 61.2
PGR142G3380 Punica granatum HOM05D000078 ORTHO05D000025 3.6e-07 58.5 47 61.7
Rhsim05G0004400 Rhododendron simsii HOM05D000078 ORTHO05D000025 3.6e-07 58.5 47 57.4
Sabra06G0108600 Salix brachista HOM05D000403 ORTHO05D000025 3.6e-07 58.5 48 60.4
Glyma.09G072000 Glycine max HOM05D000078 ORTHO05D000025 4.7e-07 58.2 48 58.3
MD02G1096500 Malus domestica HOM05D000078 ORTHO05D000025 4.7e-07 58.2 48 60.4
Potri.006G138800 Populus trichocarpa HOM05D000078 ORTHO05D000025 4.7e-07 58.2 48 60.4
RcHm_v2.0_Chr2g0095581 Rosa chinensis HOM05D000078 ORTHO05D000025 4.7e-07 58.2 46 63.0
AL2G34820 Arabidopsis lyrata HOM05D000078 ORTHO05D000025 6.2e-07 57.8 46 60.9
Glyma.15G180000 Glycine max HOM05D000078 ORTHO05D000025 6.2e-07 57.8 48 58.3
Medtr2g043050 Medicago truncatula HOM05D000078 ORTHO05D000025 6.2e-07 57.8 47 59.6
Atru.chr7.1746 Acer truncatum HOM05D000078 ORTHO05D000025 8.0e-07 57.4 48 56.2
Duzib168G1048 Durio zibethinus HOM05D000078 ORTHO05D000025 8.0e-07 57.4 48 58.3
FvH4_1g09180 Fragaria vesca HOM05D000078 ORTHO05D000025 8.0e-07 57.4 46 60.9
FAN19G1025 Fragaria x ananassa HOM05D000078 ORTHO05D000025 8.0e-07 57.4 46 60.9
FAN23G0025 Fragaria x ananassa HOM05D000078 ORTHO05D000025 8.0e-07 57.4 46 60.9
FAN26G1645 Fragaria x ananassa HOM05D000078 ORTHO05D000025 8.0e-07 57.4 46 60.9
FAN28G0259 Fragaria x ananassa HOM05D000078 ORTHO05D000025 8.0e-07 57.4 46 60.9
FAN28G2998 Fragaria x ananassa HOM05D000078 ORTHO05D000025 8.0e-07 57.4 46 60.9
Gohir.A07G016200 Gossypium hirsutum HOM05D000078 ORTHO05D000025 8.0e-07 57.4 48 60.4
Gohir.D07G016000 Gossypium hirsutum HOM05D000078 ORTHO05D000025 8.0e-07 57.4 48 60.4
Gorai.001G016800 Gossypium raimondii HOM05D000078 ORTHO05D000025 8.0e-07 57.4 48 60.4
EL10Ac8g19010 Beta vulgaris HOM05D000078 ORTHO05D000025 1.1e-06 57.0 46 60.9
C06p48940 Brassica napus HOM05D000078 ORTHO05D000025 1.1e-06 57.0 48 58.3
BolC6t39931H Brassica oleracea HOM05D000078 ORTHO05D000025 1.1e-06 57.0 48 58.3
AUR62041401 Chenopodium quinoa HOM05D000078 ORTHO05D000025 1.1e-06 57.0 46 60.9
Duzib150G0535 Durio zibethinus HOM05D000078 ORTHO05D000025 1.1e-06 57.0 48 58.3
Thhalv10019652m.g Eutrema salsugineum HOM05D000078 ORTHO05D000025 1.1e-06 57.0 48 56.2
Medtr2g043020 Medicago truncatula HOM05D000078 ORTHO05D000025 1.1e-06 57.0 54 50.0
Medtr2g043030 Medicago truncatula HOM05D000078 ORTHO05D000025 1.1e-06 57.0 51 52.9
PSO724G1063 Papaver somniferum HOM05D000078 ORTHO05D000025 1.1e-06 57.0 46 58.7
CiPaw.03G203100 Carya illinoinensis HOM05D000078 ORTHO05D000025 1.4e-06 56.6 47 59.6
Dinv42418 Davidia involucrata HOM05D000078 ORTHO05D000025 1.4e-06 56.6 48 58.3
Glyma.13G112400 Glycine max HOM05D000078 ORTHO05D000025 1.4e-06 56.6 47 57.4
PSO724G0366 Papaver somniferum HOM05D000078 ORTHO05D000025 1.4e-06 56.6 46 58.7
PSO724G0868 Papaver somniferum HOM05D000078 ORTHO05D000025 1.4e-06 56.6 46 58.7
Phvul.009G225000 Phaseolus vulgaris HOM05D000078 ORTHO05D000025 1.4e-06 56.6 48 56.2
TPR.G335 Trifolium pratense HOM05D000078 ORTHO05D000025 1.4e-06 56.6 47 57.4
TWI34G1170 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 1.4e-06 56.6 48 60.4
Aa31LG1G13460 Aethionema arabicum HOM05D000078 ORTHO05D000025 1.8e-06 56.2 49 55.1
Ah.14g084820 Amaranthus hybridus HOM05D000078 ORTHO05D000025 1.8e-06 56.2 46 58.7
Cfa002959 Carpinus fangiana HOM05D000078 ORTHO05D000025 1.8e-06 56.2 47 59.6
ClCG03G014830 Citrullus lanatus HOM05D000078 ORTHO05D000025 1.8e-06 56.2 47 59.6
Manes.03G056100 Manihot esculenta HOM05D000078 ORTHO05D000025 1.8e-06 56.2 41 68.3
PGSC0003DMG400002899 Solanum tuberosum HOM05D000078 ORTHO05D000025 1.8e-06 56.2 41 63.4
VMungo1309G1921 Vigna mungo HOM05D000078 ORTHO05D000025 1.8e-06 56.2 48 56.2
BcaC08g46926 Brassica carinata HOM05D000078 ORTHO05D000025 2.3e-06 55.8 48 56.2
BcaC08g46964 Brassica carinata HOM05D000078 ORTHO05D000025 2.3e-06 55.8 48 56.2
BcaNung06478 Brassica carinata HOM05D000078 ORTHO05D000025 2.3e-06 55.8 48 56.2
A07p40560 Brassica napus HOM05D000078 ORTHO05D000025 2.3e-06 55.8 48 56.2
BraA07t31601Z Brassica rapa HOM05D000078 ORTHO05D000025 2.3e-06 55.8 48 56.2
Cc06_g12520 Coffea canephora HOM05D000078 ORTHO05D000025 2.3e-06 55.8 104 37.5
Gohir.D08G267500 Gossypium hirsutum HOM05D000078 ORTHO05D000025 2.3e-06 55.8 47 59.6
Gorai.004G285200 Gossypium raimondii HOM05D000078 ORTHO05D000025 2.3e-06 55.8 47 59.6
Lj7P689T57 Lonicera japonica HOM05D000078 ORTHO05D000025 2.3e-06 55.8 48 56.2
Solyc12g009240.1 Solanum lycopersicum HOM05D000078 ORTHO05D000025 2.3e-06 55.8 41 63.4
Sopen12g004190 Solanum pennellii HOM05D000078 ORTHO05D000025 2.3e-06 55.8 41 63.4
TWI63G1303 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 2.3e-06 55.8 48 58.3
vmacro17106 Vaccinium macrocarpon HOM05D000078 ORTHO05D000025 2.3e-06 55.8 47 55.3
EL10Ac8g19009 Beta vulgaris HOM05D000078 ORTHO05D000025 3.1e-06 55.5 46 58.7
BcaB01g04753 Brassica carinata HOM05D000078 ORTHO05D000025 3.1e-06 55.5 46 58.7
BcaC01g06618 Brassica carinata HOM05D000078 ORTHO05D000025 3.1e-06 55.5 46 58.7
A03p10480 Brassica napus HOM05D000078 ORTHO05D000025 3.1e-06 55.5 46 58.7
C03p12070 Brassica napus HOM05D000078 ORTHO05D000025 3.1e-06 55.5 46 58.7
BolC3t13677H Brassica oleracea HOM05D000078 ORTHO05D000025 3.1e-06 55.5 46 58.7
Carub.0002s2172 Capsella rubella HOM05D000078 ORTHO05D000025 3.1e-06 55.5 46 58.7
Eucgr.C03175 Eucalyptus grandis HOM05D000078 ORTHO05D000025 3.1e-06 55.5 46 60.9
Glyma.17G047300 Glycine max HOM05D000078 ORTHO05D000025 3.1e-06 55.5 47 57.4
Gohir.D06G078100 Gossypium hirsutum HOM05D000078 ORTHO05D000025 3.1e-06 55.5 48 54.2
Actinidia30245 Actinidia chinensis HOM05D002686 ORTHO05D003222 4.0e-06 55.1 48 56.2
Gohir.A08G246400 Gossypium hirsutum HOM05D000078 ORTHO05D000025 4.0e-06 55.1 47 59.6
PSO386G0165 Papaver somniferum HOM05D000078 ORTHO05D000025 4.0e-06 55.1 47 59.6
CSS0044673 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 5.2e-06 54.7 48 54.2
Ciclev10009540m.g Citrus clementina HOM05D000078 ORTHO05D000025 5.2e-06 54.7 48 54.2
COL.COLO4_18058 Corchorus olitorius HOM05D000078 ORTHO05D000025 5.2e-06 54.7 47 55.3
MELO3C015543.2 Cucumis melo HOM05D000078 ORTHO05D000025 5.2e-06 54.7 47 57.4
Gohir.A06G078800 Gossypium hirsutum HOM05D000078 ORTHO05D000025 5.2e-06 54.7 48 54.2
Gohir.A07G018600 Gossypium hirsutum HOM05D000078 ORTHO05D000025 5.2e-06 54.7 46 56.5
PSO386G0139 Papaver somniferum HOM05D000078 ORTHO05D000025 5.2e-06 54.7 49 55.1
Psat1g136520 Pisum sativum HOM05D000078 ORTHO05D000025 5.2e-06 54.7 47 57.4
Sp5g30070 Schrenkiella parvula HOM05D000078 ORTHO05D000025 5.2e-06 54.7 48 54.2
TPR.G38760 Trifolium pratense HOM05D000078 ORTHO05D000025 5.2e-06 54.7 46 58.7
AUR62016128 Chenopodium quinoa HOM05D000078 ORTHO05D000025 6.8e-06 54.3 45 60.0
Duzib150G1236 Durio zibethinus HOM05D000078 ORTHO05D000025 6.8e-06 54.3 46 58.7
Gorai.010G091100 Gossypium raimondii HOM05D000078 ORTHO05D000025 6.8e-06 54.3 48 52.1
SGA_v2.0_scaffold296G47566 Striga asiatica HOM05D000078 ORTHO05D000025 6.8e-06 54.3 46 58.7
CARHR068250 Cardamine hirsuta HOM05D000078 ORTHO05D000025 8.9e-06 53.9 45 57.8
Nitab4.5_0000073g0330 Nicotiana tabacum HOM05D000078 ORTHO05D000025 8.9e-06 53.9 47 55.3
PGR044G0097 Punica granatum HOM05D000078 ORTHO05D000025 8.9e-06 53.9 46 58.7
SGA_v2.0_scaffold22G09927 Striga asiatica HOM05D000078 ORTHO05D000025 8.9e-06 53.9 42 57.1
TPR.G39931 Trifolium pratense HOM05D000078 ORTHO05D000025 8.9e-06 53.9 45 60.0


User provided reference genes

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