Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 1.4e-73 279.6 150 100.0
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 1.5e-40 169.9 87 100.0
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 3.5e-29 132.1 91 73.6
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 3.5e-29 132.1 91 73.6
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 6.7e-28 127.9 79 83.5
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 1.9e-27 126.3 93 68.8
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 4.3e-27 125.2 93 67.7
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 9.6e-27 124.0 96 68.8
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 1.3e-26 123.6 79 81.0
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 2.8e-26 122.5 93 66.7
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 2.4e-25 119.4 96 65.6
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 1.2e-24 117.1 79 77.2
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 1.3e-23 113.6 79 73.4
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 3.8e-23 112.1 79 74.7
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 1.9e-22 109.8 85 68.2
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 2.7e-21 105.9 85 65.9
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 2.7e-21 105.9 87 64.4
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 1.3e-20 103.6 85 64.7
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 1.8e-20 103.2 97 58.8
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 2.3e-20 102.8 86 60.5
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 5.1e-20 101.7 98 57.1
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 6.7e-20 101.3 99 58.6
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 1.1e-19 100.5 79 65.8
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 1.1e-19 100.5 79 62.0
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 1.5e-19 100.1 96 56.2
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 1.5e-19 100.1 94 57.4
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 1.5e-19 100.1 94 57.4
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 1.5e-19 100.1 79 60.8
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 1.5e-19 100.1 79 64.6
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 1.9e-19 99.8 78 62.8
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 2.5e-19 99.4 79 64.6
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 2.5e-19 99.4 78 61.5
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 4.3e-19 98.6 80 62.5
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 5.7e-19 98.2 78 62.8
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 7.4e-19 97.8 79 60.8
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 7.4e-19 97.8 80 62.5
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 7.4e-19 97.8 79 60.8
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 7.4e-19 97.8 80 62.5
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 1.3e-18 97.1 96 54.2
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 1.3e-18 97.1 79 63.3
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 1.6e-18 96.7 80 61.2
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 2.2e-18 96.3 79 62.0
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 2.2e-18 96.3 89 57.3
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 2.2e-18 96.3 79 60.8
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 2.2e-18 96.3 96 55.2
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 2.8e-18 95.9 89 56.2
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 2.8e-18 95.9 79 64.6
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 2.8e-18 95.9 80 61.2
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 2.8e-18 95.9 98 56.1
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 3.7e-18 95.5 79 63.3
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 3.7e-18 95.5 79 63.3
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 3.7e-18 95.5 79 62.0
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 4.8e-18 95.1 108 52.8
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 4.8e-18 95.1 79 59.5
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 4.8e-18 95.1 94 55.3
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 4.8e-18 95.1 79 64.6
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 6.3e-18 94.7 78 65.4
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 6.3e-18 94.7 78 65.4
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 6.3e-18 94.7 78 65.4
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 6.3e-18 94.7 78 65.4
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 6.3e-18 94.7 77 63.6
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 8.2e-18 94.4 79 63.3
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 1.1e-17 94.0 78 62.8
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 1.4e-17 93.6 119 48.7
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 1.4e-17 93.6 94 56.4
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 1.4e-17 93.6 79 59.5
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 1.4e-17 93.6 94 51.1
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 1.4e-17 93.6 110 48.2
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 1.8e-17 93.2 113 48.7
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 2.4e-17 92.8 78 61.5
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 2.4e-17 92.8 78 56.4
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 3.1e-17 92.4 110 53.6
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 3.1e-17 92.4 113 47.8
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 4.1e-17 92.0 80 56.2
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 4.1e-17 92.0 99 54.5
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 5.3e-17 91.7 79 60.8
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 5.3e-17 91.7 78 57.7
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 5.3e-17 91.7 79 60.8
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 6.9e-17 91.3 79 58.2
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 6.9e-17 91.3 78 56.4
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 1.2e-16 90.5 105 50.5
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 1.2e-16 90.5 79 58.2
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.5e-16 90.1 113 45.1
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 3.4e-16 89.0 79 59.5
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 4.5e-16 88.6 94 52.1
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 5.9e-16 88.2 79 60.8
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 7.6e-16 87.8 86 52.3
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.0e-15 87.4 114 45.6
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 1.7e-15 86.7 79 54.4
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 6.5e-15 84.7 75 60.0
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 6.5e-15 84.7 76 55.3
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 3.2e-14 82.4 105 45.7
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 4.2e-14 82.0 78 56.4
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 4.2e-14 82.0 79 53.2
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 1.2e-13 80.5 56 71.4
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 2.1e-13 79.7 77 54.5
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 7.9e-13 77.8 80 50.0
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 7.4e-11 71.2 59 57.6
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 8.2e-10 67.8 79 43.0
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 1.1e-09 67.4 77 44.2
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 1.4e-09 67.0 53 62.3
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 1.4e-09 67.0 58 55.2
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 1.8e-09 66.6 60 51.7
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 4.1e-09 65.5 57 54.4
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 4.1e-09 65.5 56 64.3
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 5.3e-09 65.1 80 47.5
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 2.0e-08 63.2 56 58.9
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 2.0e-08 63.2 56 60.7
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-08 62.8 89 40.4
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 5.9e-08 61.6 55 54.5
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 5.9e-08 61.6 50 64.0
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 7.7e-08 61.2 57 54.4
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 3.2e-06 55.8 82 39.0


User provided reference genes

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