Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 4.5e-186 654.4 331 100.0
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 1.3e-169 599.7 312 98.1
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 8.9e-166 587.0 297 100.0
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 1.0e-161 573.5 303 95.7
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 9.5e-160 567.0 302 94.4
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.6e-154 549.7 297 93.6
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 2.1e-151 539.3 297 92.3
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 2.6e-149 532.3 297 91.2
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 9.8e-149 530.4 297 89.9
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 6.0e-146 521.2 297 89.2
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 7.8e-146 520.8 298 88.9
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 8.6e-145 517.3 297 88.2
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 2.5e-144 515.8 300 86.3
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 1.2e-143 513.5 297 88.2
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.3e-137 493.4 361 72.3
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.1e-134 483.8 353 72.8
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 1.6e-127 459.9 297 78.5
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 3.0e-121 439.1 264 83.7
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 5.1e-121 438.3 261 84.3
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 1.9e-120 436.4 303 74.6
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 2.6e-117 426.0 313 70.6
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 1.6e-114 416.8 297 71.0
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.6e-114 416.8 297 70.0
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 3.5e-114 415.6 297 69.7
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 4.6e-114 415.2 297 69.7
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 6.0e-114 414.8 298 70.8
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 3.9e-113 412.1 297 70.0
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 5.6e-112 408.3 298 70.1
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 2.1e-111 406.4 297 68.7
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 6.2e-111 404.8 299 69.2
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 8.1e-111 404.4 297 69.7
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 1.1e-110 404.1 297 70.4
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 4.0e-110 402.1 306 68.0
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 4.0e-110 402.1 297 68.0
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 4.0e-110 402.1 297 69.0
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 1.5e-109 400.2 298 67.1
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 4.5e-109 398.7 297 67.7
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 5.8e-109 398.3 297 69.0
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 1.0e-108 397.5 298 68.8
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 1.0e-108 397.5 297 67.3
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 3.8e-108 395.6 297 68.4
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 6.5e-108 394.8 301 66.4
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 6.5e-108 394.8 297 67.3
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 8.4e-108 394.4 298 69.1
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 2.5e-107 392.9 298 68.8
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.2e-107 392.5 266 70.3
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 5.5e-107 391.7 259 73.7
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 7.1e-107 391.3 299 65.6
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 9.3e-107 391.0 257 75.1
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 9.3e-107 391.0 257 75.1
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 9.3e-107 391.0 255 76.1
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 9.3e-107 391.0 301 65.8
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 1.6e-106 390.2 287 69.3
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 4.6e-106 388.7 266 70.3
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 6.0e-106 388.3 302 68.2
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 7.9e-106 387.9 299 67.2
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 1.0e-105 387.5 302 68.2
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 1.3e-105 387.1 299 67.9
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 2.3e-105 386.3 312 65.4
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 3.0e-105 386.0 301 66.4
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 3.9e-105 385.6 259 72.2
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 3.9e-105 385.6 256 73.4
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.9e-105 385.6 298 65.4
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 5.1e-105 385.2 252 75.0
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 6.7e-105 384.8 303 65.0
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 6.7e-105 384.8 255 72.9
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 3.3e-104 382.5 296 66.2
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 4.3e-104 382.1 295 65.4
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 9.6e-104 380.9 233 78.1
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 9.6e-104 380.9 255 73.7
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 2.1e-103 379.8 322 64.3
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 2.8e-103 379.4 233 78.5
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 4.8e-103 378.6 233 78.5
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 4.8e-103 378.6 252 73.8
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 4.8e-103 378.6 301 64.5
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 4.8e-103 378.6 295 65.1
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 6.3e-103 378.3 332 61.7
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 6.3e-103 378.3 233 78.1
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 6.3e-103 378.3 295 64.7
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 1.4e-102 377.1 252 73.4
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 3.1e-102 375.9 257 71.2
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 3.1e-102 375.9 297 66.3
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 6.9e-102 374.8 226 78.8
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 9.0e-102 374.4 267 71.5
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 1.5e-101 373.6 251 72.5
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 2.6e-101 372.9 301 65.4
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 3.4e-101 372.5 242 76.0
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 3.4e-101 372.5 303 64.7
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 7.6e-101 371.3 233 76.0
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.3e-100 370.5 252 73.4
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 2.2e-100 369.8 256 70.7
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 2.2e-100 369.8 245 72.2
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.9e-100 369.4 296 64.2
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 5.0e-100 368.6 255 71.0
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 6.5e-100 368.2 299 64.5
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 4.2e-99 365.5 256 70.3
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 1.2e-98 364.0 258 68.2
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 7.9e-98 361.3 266 67.3
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 7.9e-98 361.3 367 55.0
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.3e-97 360.5 310 61.9
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.8e-97 360.1 289 64.7
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 6.7e-97 358.2 221 78.3
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.1e-96 357.5 266 65.8
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 2.5e-96 356.3 252 70.2
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 6.9e-94 348.2 244 69.7
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 6.9e-94 348.2 233 73.8
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 6.5e-92 341.7 226 73.0
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 1.1e-91 340.9 277 63.2
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.9e-91 340.1 237 70.0
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 9.4e-91 337.8 255 68.6
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 2.7e-90 336.3 203 79.8
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 6.1e-90 335.1 226 72.6
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.0e-89 334.3 297 59.9
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.4e-86 323.9 287 60.3
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.2e-84 316.6 223 68.2
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 1.9e-83 313.5 227 65.6
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 7.2e-83 311.6 288 56.2
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 5.1e-81 305.4 257 60.7
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 9.7e-80 301.2 228 65.4
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 1.7e-79 300.4 229 65.9
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 1.2e-77 294.3 261 59.8
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 2.0e-77 293.5 287 55.1
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 2.6e-77 293.1 205 69.3
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 6.1e-66 255.4 230 57.0
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 2.3e-65 253.4 224 57.1
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 4.0e-65 252.7 297 50.8
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 2.2e-63 246.9 245 49.0
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 2.1e-58 230.3 142 78.9
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 6.8e-57 225.3 214 53.3
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 6.8e-57 225.3 214 53.3
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.0e-56 223.8 425 36.0
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 1.1e-54 218.0 142 73.9
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.3e-52 211.1 133 75.9
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.6e-50 203.0 241 43.6
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.0e-49 199.9 252 42.1
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 3.7e-47 193.0 134 67.2
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.4e-46 190.3 231 43.3
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 6.6e-44 182.2 138 67.4
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 4.0e-41 172.9 163 54.6
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.4e-38 163.7 112 72.3
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.0e-36 156.0 97 79.4
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 1.1e-35 154.8 126 59.5
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.1e-33 148.3 97 77.3
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 2.0e-32 144.1 109 64.2
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 2.1e-29 134.0 144 50.7
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 2.3e-25 120.6 92 68.5
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 6.8e-25 119.0 101 64.4
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 4.6e-21 106.3 157 43.9
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 8.6e-20 102.1 116 50.9
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 4.7e-18 96.3 67 68.7
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 1.4e-14 84.7 77 51.9
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 6.4e-07 59.3 176 32.4


User provided reference genes

Program Settings